BAC Information

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BAC

Clone NameB6Ng01-250C20
Chromosome1 (Build37)10 (Build37)
Map Location 186,961,061 - 186,962,24191,981,569 - 91,982,411
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1
Downstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785, Lyplal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250C20.bB6Ng01-250C20.g
ACCGA057797GA057798
length1,176976
definitionB6Ng01-250C20.b B6Ng01-250C20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(186,961,061 - 186,962,241)(91,981,569 - 91,982,411)
sequence
gaattctcaaattttatcacttcaggaccctcaaatacattatgtgtgta
cacatgtgcatatgtggctttaggcagcagggtggggggaagcaaagtct
actttagatttggatatcaagtcttgtttttaatatgctgggcaaaatga
atgtttcagggaatgagtccttaataggggtaacgtgtccttttgtcttc
tttggtcgttatcatttggcccccctatctctgactttcctccttgtcac
tcttccctcctcctgtcctttctacatagctggaactgacctcggcatcc
tactcctccttctcctctcttctgagtgctggcattacaggcgtgtccgc
cacattcagttaataatgacttcctaaagaccattgcattgtctactgaa
atataacactatcaaaaccatttggtaccaacatgtgcttaaaaacttat
tttctaaatatatgaatctcacatatttctttcttccacttgaacttgtg
aacccactctactccccaatgccacagccaccagacacatacaaaacaat
ctgtcctaagatatttaataactgaacttcttgaatcatcccattatatc
ttcaataagaaatatatcagtcaaaaaattttaaatctaatttaaatttt
ctgtaacctaagatgtcagttatttaaaaaaatattagaatacacaattg
tatatgatcattgtatgcaataatcataataaataaatatttatatccat
ttattacaaaggtacttgtacataacttttttgttaatgagttaaaacta
attttaaatttttataagatgacattaaacattgatagaatgaatatgat
tttaaaatacaagttttaactaccagttctgaaaaaatagccacaaaaaa
cttttatctgagtaattttttcttgctaatgtttcttggaaaagggtccc
tgttacatttaaggaactgggagtcattgggaaagcaataggtcaaaaaa
tagctaagaaaaacataataaattttaaattctaggaaatctatttttag
catcagtgtttcctgatgtagtctctcttgttttagaagactttcatcgt
gaagagagtgaggccaagatataaacaggaatttttcaacgggtctacat
tcataactgaatcatacctcattgga

gaattcacgcagttgaatccttctcaacagtctgttttacgggaacaatt
cattaccatgacccgcagttctggttccggaatgagggatcttccttgcg
ccagtgatggtaaccgtcccgggtttttcttgtcccgggttttctcgtcc
caggtcttctcgtcccgggttttcttgtcccgggtttcggcatcaactct
tacgcgcgttcgcgtgaccggccaggaagaacgcaacaaaccggaatctt
ctgcggcaaaagctttattgctcacatcttcaggagccagagagctagag
agagccagaggaagagagagaaagaaaaagaacaagaaagcaagagagag
aaaaagcaagaacaagagagagaaaaaacacaagaacaagagagagaaaa
agcaagaacaagagagagaaaaagcacaagaacaagaacaagaaagcaag
agagagaaaaagaatggcaaaaccccgtcccttttaaggagaattatcct
ccgcctaggacgtattactccctgattggctgcagcccatcggcccagtt
gtcatcacgggaaaggcagaacacatggcgggaaaactgcccctgcacgt
gtgcagattatgtttaccacttagaacacagctgtcagcgccatcttata
atggcaaatgtgagggcggctcccaacatccagtaagccatttaaggttt
gagaagttggagaaacaataactgacgaatgtttgtcacagggatgcatt
gctgatcctgcctgtttccccacagccaaaccactgagcatattattaaa
ctcgtcgagcagcacggcagtgatgtgtggtggaccctccctgctgagca
gcttctcccggcagaagtcctagctcaggtcagtgtgggccactctggga
ggtaaaggtgacttttttgaagcaatggaaactggggagaattagaggca
gatgcagtttgcagtgaacatttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_186961061_186962241
seq2: B6Ng01-250C20.b_48_1223

seq1  GAATTCTCAAATTTTATCACTTCAGGACCCTCAAATACATTATGTGTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAATTTTATCACTTCAGGACCCTCAAATACATTATGTGTGTA  50

seq1  CACATGTGCATATGTGGCTTTAGGCAGCAGGGTGGGGGGAAGCAAAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGCATATGTGGCTTTAGGCAGCAGGGTGGGGGGAAGCAAAGTCT  100

seq1  ACTTTAGATTTGGATATCAAGTCTTGTTTTTAATATGCTGGGCAAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGATTTGGATATCAAGTCTTGTTTTTAATATGCTGGGCAAAATGA  150

seq1  ATGTTTCAGGGAATGAGTCCTTAATAGGGGTAACGTGTCCTTTTGTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCAGGGAATGAGTCCTTAATAGGGGTAACGTGTCCTTTTGTCTTC  200

seq1  TTTGGTCGTTATCATTTGGCCCCCCTATCTCTGACTTTCCTCCTTGTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCGTTATCATTTGGCCCCCCTATCTCTGACTTTCCTCCTTGTCAC  250

seq1  TCTTCCCTCCTCCTGTCCTTTCTACATAGCTGGAACTGACCTCGGCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTCCTCCTGTCCTTTCTACATAGCTGGAACTGACCTCGGCATCC  300

seq1  TACTCCTCCTTCTCCTCTCTTCTGAGTGCTGGCATTACAGGCGTGTCCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTCCTTCTCCTCTCTTCTGAGTGCTGGCATTACAGGCGTGTCCGC  350

seq1  CACATTCAGTTAATAATGACTTCCTAAAGACCATTGCATTGTCTACTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCAGTTAATAATGACTTCCTAAAGACCATTGCATTGTCTACTGAA  400

seq1  ATATAACACTATCAAAACCATTTGGTACCAACATGTGCTTAAAAACTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACACTATCAAAACCATTTGGTACCAACATGTGCTTAAAAACTTAT  450

seq1  TTTCTAAATATATGAATCTCACATATTTCTTTCTTCCACTTGAACTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAATATATGAATCTCACATATTTCTTTCTTCCACTTGAACTTGTG  500

seq1  AACCCACTCTACTCCCCAATGCCACAGCCACCAGACACATACAAAACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACTCTACTCCCCAATGCCACAGCCACCAGACACATACAAAACAAT  550

seq1  CTGTCCTAAGATATTTAATAACTGAACTTCTTGAATCATCCCATTATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTAAGATATTTAATAACTGAACTTCTTGAATCATCCCATTATATC  600

seq1  TTCAATAAGAAATATATCAGTCAAAAAATTTTAAATCTAATTTAAATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAAGAAATATATCAGTCAAAAAATTTTAAATCTAATTTAAATTTT  650

seq1  CTGTAACCTAAGATGTCAGTTATTTAAAAAAATATTAGAATACACAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACCTAAGATGTCAGTTATTTAAAAAAATATTAGAATACACAATTG  700

seq1  TATATGATCATTGTATGCAATAATCATAATAAATAAATATTTATATCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGATCATTGTATGCAATAATCATAATAAATAAATATTTATATCCAT  750

seq1  TTATTACAAAGGTACTTGTACATAACTTTTTTGTTAATGAGTTAAAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACAAAGGTACTTGTACATAACTTTTTTGTTAATGAGTTAAAACTA  800

seq1  ATTTTAAATTTTTATAAGATGACATTAAACATTGATAGAATGAATATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATTTTTATAAGATGACATTAAACATTGATAGAATGAATATGAT  850

seq1  TTTAAAATACAAGTTTTAACTACCAGTTCTGAAAAAAATAGCCACAAAAA  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTAAAATACAAGTTTTAACTACCAGTTCTG-AAAAAATAGCCACAAAAA  899

seq1  ACTTTTATCTGAGTAATTTTT--CTGCTAATGTTTCTTGG-AAAGGGTCC  947
      |||||||||||||||||||||   |||||||||||||||| |||||||||
seq2  ACTTTTATCTGAGTAATTTTTTCTTGCTAATGTTTCTTGGAAAAGGGTCC  949

seq1  CTGTTACATTTAAGGAACT-GGAGTCATT-GGAAAGCAATAGTTC-AAAA  994
      ||||||||||||||||||| ||||||||| |||||||||||| || ||||
seq2  CTGTTACATTTAAGGAACTGGGAGTCATTGGGAAAGCAATAGGTCAAAAA  999

seq1  ATAGCTAAG-AAAACAT-ATAAATTTAAATTTCTTAAGAAATCTAATTTT  1042
      ||||||||| ||||||| |||||||| || ||| || |||||||| ||||
seq2  ATAGCTAAGAAAAACATAATAAATTTTAAATTC-TAGGAAATCTATTTTT  1048

seq1  AGCATTCAGTGTTTCTTGGTGTAGTCTCTTCTTTGTTTTTAGAGACTTTC  1092
      |||| |||||||||| || ||||||||||   |||||||   ||||||||
seq2  AGCA-TCAGTGTTTCCTGATGTAGTCTCT--CTTGTTTTAGAAGACTTTC  1095

seq1  AATCGTGAGGAAGAGTGAGG-CAAGATTATTAAACAAGATTTTTCCACAC  1141
       ||||||| | ||||||||| ||||||   |||||| || |||| ||   
seq2  -ATCGTGAAG-AGAGTGAGGCCAAGAT--ATAAACAGGAATTTTTCAACG  1141

seq1  GGCCCACCCATCACATAACTGAATCATTACCTCCATTGGA  1181
      || | |  |||  ||||||||||||| ||||| |||||||
seq2  GGTCTA--CAT-TCATAACTGAATCA-TACCT-CATTGGA  1176


seq1: chr10_91981569_91982411
seq2: B6Ng01-250C20.g_67_722 (reverse)

seq1  TGCCATTATAAGATGGCACTGACAGCTGTGTTCTAAGTGGTAAACATAAT  50
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGCCATTATAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAACATAAT  50

seq1  CTGCACACGTGCAGGGGCAGTTTTCCCGCCATGTGTTCTACCTTTCTCGT  100
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  CTGCACACGTGCAGGGGCAGTTTTCCCGCCATGTGTTCTGCCTTTCCCGT  100

seq1  GATGACAACTGGGCCGATGGGCTGCAGCCAATCAGGGAGTAATACGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAACTGGGCCGATGGGCTGCAGCCAATCAGGGAGTAATACGTCCT  150

seq1  AGGCGGAGGATAATTCTCCTTAAAAGGGACGGGGTTTTGCCATTCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGAGGATAATTCTCCTTAAAAGGGACGGGGTTTTGCCATTCTTTTT  200

seq1  CTCTC--------------TCTTGTTCT--TGCTTTTTCTCTCTCTTGTT  234
      |||||              |||||||||  ||||||||||||||||||||
seq2  CTCTCTCTTGCTTTCTTGTTCTTGTTCTTGTGCTTTTTCTCTCTCTTGTT  250

seq1  CTTGCTTTCTTTTTCTCT--CTCTTG----------CTTTCTTGTT----  268
      |||||||| | | |||||   |||||          || |||||||    
seq2  CTTGCTTTTTCTCTCTCTTGTTCTTGTGTTTTTTCTCTCTCTTGTTCTTG  300

seq1  CTTTTTCTCTCTCTTGCTTTCTTGTTCTTGTTCTTTCTCTCTCTCTTGCA  318
      ||||||||||||||||||||||||||||| |||||  |||||||||| | 
seq2  CTTTTTCTCTCTCTTGCTTTCTTGTTCTTTTTCTT--TCTCTCTCTTCCT  348

seq1  CTCTTGCACTCTTGCTCTCTGGCTCCTGAAGATGTAAGCAATAAAGC-TT  367
      ||    | |||| |||||||||||||||||||||| ||||||||||| ||
seq2  CTGGCTCTCTCTAGCTCTCTGGCTCCTGAAGATGTGAGCAATAAAGCTTT  398

seq1  TGCCGCAGAAGATTCCGGTTTGTTGCGTTCTTCCTGGCCGGT--CGCGAA  415
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  TGCCGCAGAAGATTCCGGTTTGTTGCGTTCTTCCTGGCCGGTCACGCGAA  448

seq1  CGCGTGTAAGAGTTGGTGCTGAGACCCGGGACGAGAAGACCCGGGACGAG  465
      |||| |||||||||| ||| || ||||||||| |||| |||||||||   
seq2  CGCGCGTAAGAGTTGATGCCGAAACCCGGGACAAGAAAACCCGGGAC---  495

seq1  AAGACCTGGGATGAGAAGACCTGGGACGAGAAATCCCGGGACGAGAAGAC  515
                  ||||||||||||||||||||| |||||||| |||    
seq2  ------------GAGAAGACCTGGGACGAGAAAACCCGGGACAAGA----  529

seq1  CTGGGACGAGAAGACCTGGGACGAGAAGACCTGGGACGAGAAAACCTGGG  565
                                              |||||| |||
seq2  ----------------------------------------AAAACCCGGG  539

seq1  ACGGTTACCATCACAGGCGCAAGGAAGATCCCTCATTCCGGAACCAGAAC  615
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACGGTTACCATCACTGGCGCAAGGAAGATCCCTCATTCCGGAACCAGAAC  589

seq1  TGCGGGTCACGGTCAT-AAAGGTTCCCGTAAAACAGACTGTTGAGAAGGA  664
      ||||||||| ||| || ||  |||||||||||||||||||||||||||||
seq2  TGCGGGTCATGGTAATGAATTGTTCCCGTAAAACAGACTGTTGAGAAGGA  639

seq1  TTCAACTGCGTGAATTCAGAACTCTTCAGCTGGGGAACGGTGGTAATGAA  714
      |||||||||||||||||                                 
seq2  TTCAACTGCGTGAATTC---------------------------------  656

seq1  GTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCATGAATTCAG  764
                                                        
seq2  --------------------------------------------------  656

seq1  AACTCTTCAGCTGGGGAACGGTGGTAATGAAGTGTTCCCGTAAAACAGAC  814
                                                        
seq2  --------------------------------------------------  656

seq1  TGTTGAGAAGGATTCAACTGCGTGAATTC  843
                                   
seq2  -----------------------------  656


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