BAC Information

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BAC

Clone NameB6Ng01-250D04
Chromosome10 (Build37)
Map Location 34,306,859 - 34,308,021
singlet/doubletsinglet
Overlap geneFrk
Upstream geneA330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1
Downstream geneLOC667824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250D04.bB6Ng01-250D04.g
ACCGA057811GA057812
length1,1941,204
definitionB6Ng01-250D04.b B6Ng01-250D04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacctaaacaggacatctattatcagtcttcacatcaaggctcag
aggacattctaggatatacaggattcctatgaatcattatgttctgatag
tgttgctgtacgcacaagcccaagacagctgtagttgccttattagacct
gctcacaattgtcaatattctgtcatagatgtggaaaggtgtcatgaggc
tctacccattccttgagagctactggcagttaatggtttcggggggggcg
gggggaagagtcattttcttcagtggtatagccactaataagtctcccat
gttccagaatatatcatgcctatccatacttttgcaagcaactaggttaa
ccttagtttatcaacatcatcaaaaaaacagacataaaaatagagagata
cttgtgggaagaagcaattcaatgagagtaaagggggaaatgaaaatata
gtggtgtgtgttaaaatgatttgaaaagtatattatatacatgcacacat
tgtcaaagaatgtacctaaaatgattcacaaatatggtatcaacaaaaat
aatacaaccctatcaaaagctgaaaccctacacttcttaaatgcaacaac
tttgtgtcatattcaatatgttactttcaatgtcccttacctcctcttgt
caattccttgggattcccaaatgtgccttaacatggagtgtgggaaacat
agtactatacatactaacatctgagatgctaaattcttaagttcagtcaa
taggaggcttctaaaaaaatgtaagcactgtggactaggaaataatagag
gttcacagaacactgtagtctacccaatagttacgatccttgcagtgtta
tcagaggtagatatgaggcagccagagactcatattgtacttctatagaa
tgccatttctatatagtataattcaacaatgacaactatgggtcagaagc
tctgccatttgcttaacattaataattaacataacaatataactttttca
tgactgactttgaaccaagaacctatatacatgtgtcctctaccaatgac
ctaaatttaaattattataataacctttgctagaagtgccttagcaataa
tttacttattttaatcattgttattgtttcattctcctaaataaagattg
ttatccttgaaataatttctagcttgtcatctgaattgtgtgta
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggagatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaagatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctggccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggag
caaaacacccttggaaggagttacagagacaaagtttggagttgagataa
aaggatggaccatgtagacactaccatatccggggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaac
atagaagtggatgctcacagttcggctattggatggatcacatgggctcc
caatgaaggagctagagaaagtaccaaagaagctaaagggattctgcacc
ctattaggtggacacattatgactaaccagtacccgggagcttctggact
ctagctgcatattgcatcaaaagatgggcctagtcgcatcactggaaaga
gagggctcattggaacacgcaactttatatggccaagtacagggaacgca
gtctaaatggatgggtggctaaggacacgtcgtggtctgtgactgtgtcg
tgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_34306859_34308021
seq2: B6Ng01-250D04.b_55_1237 (reverse)

seq1  TACACACAA-TCAGATGACAAGCTAG-AATTA-TTCAAGGAATAACATTC  47
      ||||||||| |||||||||||||||| ||||| ||||||| |||||| ||
seq2  TACACACAATTCAGATGACAAGCTAGAAATTATTTCAAGG-ATAACAATC  49

seq1  TTTATT--AGAG-ATG-AACTATA--CATGATTAAAAT-AGTAA--TAAT  88
      ||||||   ||| ||| ||| |||   ||||||||||| |||||  || |
seq2  TTTATTTAGGAGAATGAAACAATAACAATGATTAAAATAAGTAAATTATT  99

seq1  GCTAAGGCCACTCTAGCAAA-GTTATTATAATAATT--AAATTAGGTCAT  135
      ||||||||   ||||||||| |||||||||||||||  || |||||||||
seq2  GCTAAGGCACTTCTAGCAAAGGTTATTATAATAATTTAAATTTAGGTCAT  149

seq1  TGGTAGA-GACACAT-TGTATA-GTTCTTGGTTCAAAGTCAGTCATGAAA  182
      ||||||| ||||||| | |||| |||||||||||||||||||||||||||
seq2  TGGTAGAGGACACATGTATATAGGTTCTTGGTTCAAAGTCAGTCATGAAA  199

seq1  AAG-TATATTGTTATTGTTATTA-TAATGTT-AGCAAATGGCAGAGCTTC  229
      ||| |||||||||||  | |||| ||||||| ||||||||||||||||||
seq2  AAGTTATATTGTTATGTTAATTATTAATGTTAAGCAAATGGCAGAGCTTC  249

seq1  TGACCCATAGTTGTCATTGTTGAATTATACTATATAGAAATGGCATTCTA  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCATAGTTGTCATTGTTGAATTATACTATATAGAAATGGCATTCTA  299

seq1  TAGAAGTACAATATGAGTCTCTGGCTGCCTCATATCTACCTCTGATAACA  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTACAATATGAGTCTCTGGCTGCCTCATATCTACCTCTGATAACA  349

seq1  CTGCAAGGATCGTAACTATTGGGTAGACTACAGTGTTCTGTGAACCTCTA  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGGATCGTAACTATTGGGTAGACTACAGTGTTCTGTGAACCTCTA  399

seq1  TTATTTCCTAGTCCACAGTGCTTACATTTTTTTAGAAGCCTCCTATTGAC  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCTAGTCCACAGTGCTTACATTTTTTTAGAAGCCTCCTATTGAC  449

seq1  TGAACTTAAGAATTTAGCATCTCAGATGTTAGTATGTATAGTACTATGTT  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTAAGAATTTAGCATCTCAGATGTTAGTATGTATAGTACTATGTT  499

seq1  TCCCACACTCCATGTTAAGGCACATTTGGGAATCCCAAGGAATTGACAAG  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACACTCCATGTTAAGGCACATTTGGGAATCCCAAGGAATTGACAAG  549

seq1  AGGAGGTAAGGGACATTGAAAGTAACATATTGAATATGACACAAAGTTGT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTAAGGGACATTGAAAGTAACATATTGAATATGACACAAAGTTGT  599

seq1  TGCATTTAAGAAGTGTAGGGTTTCAGCTTTTGATAGGGTTGTATTATTTT  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTAAGAAGTGTAGGGTTTCAGCTTTTGATAGGGTTGTATTATTTT  649

seq1  TGTTGATACCATATTTGTGAATCATTTTAGGTACATTCTTTGACAATGTG  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATACCATATTTGTGAATCATTTTAGGTACATTCTTTGACAATGTG  699

seq1  TGCATGTATATAATATACTTTTCAAATCATTTTAACACACACCACTATAT  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTATATAATATACTTTTCAAATCATTTTAACACACACCACTATAT  749

seq1  TTTCATTTCCCCCTTTACTCTCATTGAATTGCTTCTTCCCACAAGTATCT  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCCCCCTTTACTCTCATTGAATTGCTTCTTCCCACAAGTATCT  799

seq1  CTCTATTTTTATGTCTGTTTTTTTGATGATGTTGATAAACTAAGGTTAAC  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTTTATGTCTGTTTTTTTGATGATGTTGATAAACTAAGGTTAAC  849

seq1  CTAGTTGCTTGCAAAAGTATGGATAGGCATGATATATTCTGGAACATGGG  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGCTTGCAAAAGTATGGATAGGCATGATATATTCTGGAACATGGG  899

seq1  AGACTTATTAGTGGCTATACCACTGAAGAAAATGACTCTTCCCCCCGCCC  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTATTAGTGGCTATACCACTGAAGAAAATGACTCTTCCCCCCGCCC  949

seq1  CCCCCGAAACCATTAACTGCCAGTAGCTCTCAAGGAATGGGTAGAGCCTC  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGAAACCATTAACTGCCAGTAGCTCTCAAGGAATGGGTAGAGCCTC  999

seq1  ATGACACCTTTCCACATCTATGACAGAATATTGACAATTGTGAGCAGGTC  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACCTTTCCACATCTATGACAGAATATTGACAATTGTGAGCAGGTC  1049

seq1  TAATAAGGCAACTACAGCTGTCTTGGGCTTGTGCGTACAGCAACACTATC  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGGCAACTACAGCTGTCTTGGGCTTGTGCGTACAGCAACACTATC  1099

seq1  AGAACATAATGATTCATAGGAATCCTGTATATCCTAGAATGTCCTCTGAG  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATAATGATTCATAGGAATCCTGTATATCCTAGAATGTCCTCTGAG  1149

seq1  CCTTGATGTGAAGACTGATAATAGATGTCCTGTT  1163
      ||||||||||||||||||||||||||||||||||
seq2  CCTTGATGTGAAGACTGATAATAGATGTCCTGTT  1183