BAC Information

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BAC

Clone NameB6Ng01-252H06
Chromosome10 (Build37)
Map Location 127,671,551 - 127,795,710
singlet/doubletdoublet
Overlap geneTimeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs
Upstream geneKif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip
Downstream geneCoq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252H06.bB6Ng01-252H06.g
ACCGA059444GA059445
length1,0751,072
definitionB6Ng01-252H06.b B6Ng01-252H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,794,629 - 127,795,710)(127,671,551 - 127,672,628)
sequence
gaattccaggatagccagggctacatagacagatcctgtctcaagaaaca
aaaataaaagcaaaacaaattttcccatcaatccaggcaggccctggggc
ataacaccaactggagctcacctatggatggtgaggtacaaacgcatgag
ctcggtgaactgagggtcggtgtagcctaacatgttggtaaaattgtgtg
accagtctagcctagagtcaatggctccgatactgctgccctcccggtac
agattccggtagatcttggctgcaacgcacggcagcttggcaatgaggtc
catgcagtcctcatagatgagctgaagagaagaaaggtggagagaaagga
attacccacaaagcattaggctgtgattcttactgtcctttgcattgata
gctatatgctgagtggttacatattaagtatattttgtggtatgtaataa
taagcatacactgagtaaaccactataatcaaggtttatagcatctgctg
tgtattaacacacaatccccattgtttccatcccactaaatacataactt
catattcacagatgaagacctgaggttcccagaccttagttattaaacta
aaatataaaccctggtgtgctcaattgtggtcttctccaggatgctataa
ctttggcactactgaacatgtgctgagatgccacctttatgtgcacacag
agggaggtggaacatggcacagcacacagagagattctctccccttccat
ggggactgaagttaggtttcaagaaccatacagatgcctttacatgtaag
ccacctcacggcccactgtttactattaattctttcttttttttcctttt
tttaaaaagatttatttatttattatatgtaagtacactgtagctgtctt
cagacacactccagaagagggagtcagatgtccttatggatggttgtgag
ccaccatgtggttgctgggatttgaactccggaccttcggaggagcagtc
gggtaacgaaccaactgagcatctcaccagcctaatatattcttatttcc
ttataatatgattaaagtaattcta
gaattcctgcatccttggccagccagctgagctccatccccacgaaccag
gaacatcttcagaacactggccgagccccactccctggaaatcattaact
gtgccccacaaactcgccgtcttaaacaatctgctttgactatcctgtac
acaaaatgtaaatgccgtgaggtaggagaagggggtggctactgggtcaa
gaagtcacaactgtcatatgagcagtcttctaagcccacaacttaaatgt
agcttgaaaggtgaccgtgggaagatcattaagactatattgtgggcacg
ggtggagctttttgttcttaactgagaaagggtcttctgtagcccaggct
ggcctcagtcattctgtgtggttcttcccatagtgagaattgaaccaaag
gcccaccacaccagagccctgacactacattctagttccctgggtcccat
tcctgtcactgcttacactgggtgttagctgtgttcctagtttctttttc
ttctgtacttaatctatctacctacctacccatttatttatttttgtcat
actgggattaaacccagagccttatgcatgctagataagcatcctacaac
tgagctacatccccaacacaaacttactttctttccttcttttttaagat
tttatttttagttacgtgtatatgcatgtatttgtgcagttgcctgtgga
gatgcttgatctcctgtgagctgccacgtggtggccgggaattgaacccg
ggtcctctggaagaacagccagcgcgcttttttttttttttcatttttta
ttaggtatttagctcatttacatttccaatgctataccaaaagtccccca
tacccacccctcccactccctacccaccactccccctttttggccctggg
gtcccctgtactgggggcatatacagtcaggcgctcttaactgcagagct
gtctctcctgccccagcacaattttcttgaagaagaattctgaccgaacc
tctccaatgttgccacagtacctcctctttcagagcaataaactgaacat
gggttgtttgtaaagatgttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_127794629_127795710
seq2: B6Ng01-252H06.b_45_1119 (reverse)

seq1  TAGAATTAACTTTAAAACATTATTATAAAGAAATAAAGAATTAATATTAG  50
      ||||||| ||||| || || |||||||| ||||| ||||||  |||||| 
seq2  TAGAATT-ACTTT-AATCA-TATTATAAGGAAAT-AAGAAT--ATATTA-  43

seq1  GGCTGGTGAGATGGCTCAGTTGGTTCG-TACCCGACTGCTCTTCCGAAGG  99
      |||||||||||| |||||||||||||| ||||||||||||| ||||||||
seq2  GGCTGGTGAGAT-GCTCAGTTGGTTCGTTACCCGACTGCTCCTCCGAAGG  92

seq1  TCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAA  142

seq1  GGACATCTGACTCCCTCTTCTGGAGTGTGTCTGAAGACAGCTACAGTGTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCTGACTCCCTCTTCTGGAGTGTGTCTGAAGACAGCTACAGTGTA  192

seq1  CTTACATATAATAAATAAATAAATCTTTTTAAAAAAAGGAAAAAAAAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATATAATAAATAAATAAATCTTTTTAAAAAAAGGAAAAAAAAGAA  242

seq1  AGAATTAATAGTAAACAGTGGGCCGTGAGGTGGCTTACATGTAAAGGCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAATAGTAAACAGTGGGCCGTGAGGTGGCTTACATGTAAAGGCAT  292

seq1  CTGTATGGTTCTTGAAACCTAACTTCAGTCCCCATGGAAGGGGAGAGAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGGTTCTTGAAACCTAACTTCAGTCCCCATGGAAGGGGAGAGAAT  342

seq1  CTCTCTGTGTGCTGTGCCATGTTCCACCTCCCTCTGTGTGCACATAAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTGTGCTGTGCCATGTTCCACCTCCCTCTGTGTGCACATAAAGG  392

seq1  TGGCATCTCAGCACATGTTCAGTAGTGCCAAAGTTATAGCATCCTGGAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTCAGCACATGTTCAGTAGTGCCAAAGTTATAGCATCCTGGAGA  442

seq1  AGACCACAATTGAGCACACCAGGGTTTATATTTTAGTTTAATAACTAAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACAATTGAGCACACCAGGGTTTATATTTTAGTTTAATAACTAAGG  492

seq1  TCTGGGAACCTCAGGTCTTCATCTGTGAATATGAAGTTATGTATTTAGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAACCTCAGGTCTTCATCTGTGAATATGAAGTTATGTATTTAGTG  542

seq1  GGATGGAAACAATGGGGATTGTGTGTTAATACACAGCAGATGCTATAAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAAACAATGGGGATTGTGTGTTAATACACAGCAGATGCTATAAAC  592

seq1  CTTGATTATAGTGGTTTACTCAGTGTATGCTTATTATTACATACCACAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTATAGTGGTTTACTCAGTGTATGCTTATTATTACATACCACAAA  642

seq1  ATATACTTAATATGTAACCACTCAGCATATAGCTATCAATGCAAAGGACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTAATATGTAACCACTCAGCATATAGCTATCAATGCAAAGGACA  692

seq1  GTAAGAATCACAGCCTAATGCTTTGTGGGTAATTCCTTTCTCTCCACCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAATCACAGCCTAATGCTTTGTGGGTAATTCCTTTCTCTCCACCTT  742

seq1  TCTTCTCTTCAGCTCATCTATGAGGACTGCATGGACCTCATTGCCAAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTTCAGCTCATCTATGAGGACTGCATGGACCTCATTGCCAAGCT  792

seq1  GCCGTGCGTTGCAGCCAAGATCTACCGGAATCTGTACCGGGAGGGCAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGCGTTGCAGCCAAGATCTACCGGAATCTGTACCGGGAGGGCAGCA  842

seq1  GTATCGGAGCCATTGACTCTAGGCTAGACTGGTCACACAATTTTACCAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCGGAGCCATTGACTCTAGGCTAGACTGGTCACACAATTTTACCAAC  892

seq1  ATGTTAGGCTACACCGACCCTCAGTTCACCGAGCTCATGCGTTTGTACCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGGCTACACCGACCCTCAGTTCACCGAGCTCATGCGTTTGTACCT  942

seq1  CACCATCCATAGGTGAGCTCCAGTTGGTGTTATGCCCCAGGGCCTGCCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCCATAGGTGAGCTCCAGTTGGTGTTATGCCCCAGGGCCTGCCTG  992

seq1  GATTGATGGGAAAATTTGTTTTGCTTTTATTTTTGTTTCTTGAGACAGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATGGGAAAATTTGTTTTGCTTTTATTTTTGTTTCTTGAGACAGGA  1042

seq1  TCTGTCTATGTAGCCCTGGCTATCCTGGAATTC  1082
      |||||||||||||||||||||||||||||||||
seq2  TCTGTCTATGTAGCCCTGGCTATCCTGGAATTC  1075

seq1: chr10_127671551_127672628
seq2: B6Ng01-252H06.g_70_1141

seq1  GAATTCCTGCATCCTTGGCCAGCCAGCTGAGCTCCATCCCCACGAACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCATCCTTGGCCAGCCAGCTGAGCTCCATCCCCACGAACCAG  50

seq1  GAACATCTTCAGAACACTGGCCGAGCCCCACTCCCTGGAAATCATTAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCTTCAGAACACTGGCCGAGCCCCACTCCCTGGAAATCATTAACT  100

seq1  GTGCCCCACAAACTCGCCGTCTTAAACAATCTGCTTTGACTATCCTGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCCACAAACTCGCCGTCTTAAACAATCTGCTTTGACTATCCTGTAC  150

seq1  ACAAAATGTAAATGCCGTGAGGTAGGAGAAGGGGGTGGCTACTGGGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGTAAATGCCGTGAGGTAGGAGAAGGGGGTGGCTACTGGGTCAA  200

seq1  GAAGTCACAACTGTCATATGAGCAGTCTTCTAAGCCCACAACTTAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCACAACTGTCATATGAGCAGTCTTCTAAGCCCACAACTTAAATGT  250

seq1  AGCTTGAAAGGTGACCGTGGGAAGATCATTAAGACTATATTGTGGGCACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAAAGGTGACCGTGGGAAGATCATTAAGACTATATTGTGGGCACG  300

seq1  GGTGGAGCTTTTTGTTCTTAACTGAGAAAGGGTCTTCTGTAGCCCAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGCTTTTTGTTCTTAACTGAGAAAGGGTCTTCTGTAGCCCAGGCT  350

seq1  GGCCTCAGTCATTCTGTGTGGTTCTTCCCATAGTGAGAATTGAACCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAGTCATTCTGTGTGGTTCTTCCCATAGTGAGAATTGAACCAAAG  400

seq1  GCCCACCACACCAGAGCCCTGACACTACATTCTAGTTCCCTGGGTCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCACACCAGAGCCCTGACACTACATTCTAGTTCCCTGGGTCCCAT  450

seq1  TCCTGTCACTGCTTACACTGGGTGTTAGCTGTGTTCCTAGTTTCTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCACTGCTTACACTGGGTGTTAGCTGTGTTCCTAGTTTCTTTTTC  500

seq1  TTCTGTACTTAATCTATCTACCTACCTACCCATTTATTTATTTTTGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTACTTAATCTATCTACCTACCTACCCATTTATTTATTTTTGTCAT  550

seq1  ACTGGGATTAAACCCAGAGCCTTATGCATGCTAGATAAGCATCCTACAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGATTAAACCCAGAGCCTTATGCATGCTAGATAAGCATCCTACAAC  600

seq1  TGAGCTACATCCCCAACACAAACTTACTTTCTTTCCTTCTTTTTTAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTACATCCCCAACACAAACTTACTTTCTTTCCTTCTTTTTTAAGAT  650

seq1  TTTATTTTTAGTTACGTGTATATGCATGTATTTGTGCAGTTGCCTGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTAGTTACGTGTATATGCATGTATTTGTGCAGTTGCCTGTGGA  700

seq1  GATGCTTGATCTCCTGTGAGCTGCCACGTGGTGGCCGGGAATTGAACCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTGATCTCCTGTGAGCTGCCACGTGGTGGCCGGGAATTGAACCCG  750

seq1  GGTCCTCTGGAAGAACAGCCAGCGCGCTTTTTTTTTTTTTTCATTTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCTGGAAGAACAGCCAGCGCGCTTTTTTTTTTTTTTCATTTTTTA  800

seq1  TTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCA  850

seq1  TACCCACCCCTCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTG  900
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  TACCCACCCCTCCCACT-CCCTACCCA-CCACTCCCCCTTTTTGGCCCTG  898

seq1  GCGTTCCCCTGTACT-GGGGCATATAACAGCCA-GCGCTCTTAACTGCAG  948
      | | ||||||||||| ||||||||| |||| || ||||||||||||||||
seq2  G-GGTCCCCTGTACTGGGGGCATAT-ACAGTCAGGCGCTCTTAACTGCAG  946

seq1  AGCTGTCTCTCTAGCCCCAGCACAAATTTTCTTGAAG-AGAAATCTGAGC  997
      |||||||||||  |||||||||| ||||||||||||| |||| ||||| |
seq2  AGCTGTCTCTCCTGCCCCAGCAC-AATTTTCTTGAAGAAGAATTCTGACC  995

seq1  AGACCTCTCCATGGTTGCCACAGTACCCTCTCTTTTCAAGAGGCATAAAC  1047
        |||||||||  ||||||||||||||  ||||||   ||||  ||||||
seq2  GAACCTCTCCAATGTTGCCACAGTACCTCCTCTTT--CAGAGCAATAAAC  1043

seq1  TGAGCATGGTTTGTTTGGTAAAGGATGTTCA  1078
      ||| ||||| |||||| ||||| ||||||||
seq2  TGAACATGGGTTGTTT-GTAAA-GATGTTCA  1072