BAC Information

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BAC

Clone NameB6Ng01-252N13
Chromosome10 (Build37)
Map Location 17,212,511 - 17,303,997
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252N13.bB6Ng01-252N13.g
ACCGA059732GA059733
length1,1721,166
definitionB6Ng01-252N13.b B6Ng01-252N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,302,810 - 17,303,997)(17,212,511 - 17,213,694)
sequence
gaattccacaaactccacagagcaaggtcagtctctctttcaccccttcc
cacagccaactgcctttccttcccaaagacaatcatccttacaatcttat
tttgttgttccagggatggtacatttagatccttctaaaaacagcttcta
tctcataacaggtcatgaagatcaacctttttgcactggggaaagtcatt
ggcctctctttagcaaagagatagaagctgagctcaggttgttctgacta
tgcatcacgatgacttaggaaagcaggcagagccaaatttgcttttcgag
gttaggaaaaatggtaactacaggggacatctttatttaccctattaaat
aggccatgactggcagaagccaatgccctcaccagagaccagagttccta
tctcattttgtccactacacatagacatgcaaccaacccatacgtcttct
ctgggaccaactggagtttcagtgtgggtacacattgcttttctacttag
aaatcatgcttaattttttttaaagtttttttatttttttatttatgagt
acactgcaactgtcttcagacacatctgaagagggcatcagatcctatta
cagatggttgtgagccaccatgtggttgctgggatttgaactcaggacct
ctggaaaagcagtcagtgctcttaactgctgagctatctctccagcccca
tgctgagttttgtgaaggaacaaaattttttatattctactagcaatatt
tgtagtttcaacaggcatttagcacatgaatatagatatacacctataca
catggttccataaactttcacattctcttgtctaaatttagggctaatct
aatggtcaccgcagttcacaaatgcatgcactcaagagtaaaggctggga
tatgttttttctactccaccacaatgaaacataacgagaaaaggggtgag
tcaagatgagcttgatggaagaagtttggtaattgctcctctttggtggt
taatatctgagaaggtagtgacagtctgtctctactctaaatgtacttcc
atttcatactgagtactctggctaccagagcagaaatatctgagctgtga
tgttcagtccctggtgtgtgctggtttaggctattgtacacagctgatga
atctagattcagacactttttt

gaattcaagtcctaatgcttgaacctgagagggcacatccaaattaaatt
actctacgaaagtcgtctatcatgagacttggttggacgccttagatgct
cctgtgtggtgtagatgattaatttgcttcagttcccaggtagccatcac
actatgcagaatggttactacaagtctttcagacttcacagcatttccta
aatacattcctcagctagtaactattaatccacaccttctaaaggctatg
tgttcgttcatctcactcttccccagaagaactgaggaaatggcaggaaa
gacatatcttaaatgccataattgctttagctgtgagcttatctctctcg
actgagtcaaagcatgcttaggatgagagagaaacatcggagcctcccat
caaagatgagagaatgtactgctgaagagaagcttctggatcaggaaggt
taaagccagggagagagccaacaggtcctgagacgcaaggacaccctgcc
ctacattcctgttttttcagggaggggcttcgactgtccacagagagcat
ttgccattttacagacactgacggcttctttctaaggctcgagagtgtta
ttaaagtccctgatacatcaaactaaacatctgacagttagatagtgccg
gcagatatctttgttatcatgaccttcacattttcagtgtggtctcgacc
agagataagtccacttcagcctcagactgcacaggactcctcaaaggaga
gctgggaatctcctggttttccccactttttcttgtccctgacaagaagg
cctccccttgatttgtttttgtccagcctcattttgatttatgggctttt
ctcccccaccccctcaactccccctaagaatccaggagagagaaccaaaa
ggagggggcatctggagaggccaccacagtccccccccccatcattgttg
aggttcccaggtgtcaggatgagggtgaatttactctgtccaccagcaat
gagaatttttagtgtgaggagaaagaaacatccaggcctcagtgagccgt
gtatattttcataatacagcttttgtacttcaagtttacgtaggtgacag
gactcatccacaaagatctcagttccctagctcaggatccatagaaaaaa
tccaagaaaggaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_17302810_17303997
seq2: B6Ng01-252N13.b_46_1217 (reverse)

seq1  AAAAAAGATGCTGGAATCTAGAATTCCATCAAGCTGTGTACAAATAAGGC  50
      ||||||| ||   |||||||||  | |||| |||||||||| ||||  ||
seq2  AAAAAAG-TGTCTGAATCTAGA--TTCATC-AGCTGTGTAC-AATA--GC  43

seq1  TAAAACAAGCACACAACCAGGAACTGAAACATCACAGCTTCAGATATTTC  100
        |||| ||||||| |||||| |||| ||||||||||| |||||||||||
seq2  CTAAACCAGCACAC-ACCAGGGACTG-AACATCACAGC-TCAGATATTTC  90

seq1  TTGCTTCTTGGGTAGCCAGAGGTACTCAGTAATGAAATGG-AGTACATTT  149
       ||| |||  |||||||||| ||||||||| ||||||||| |||||||||
seq2  -TGC-TCT--GGTAGCCAGA-GTACTCAGT-ATGAAATGGAAGTACATTT  134

seq1  AGGAGTAGAGACAAGACTGTCACTACCTTCTCAGATATAAACCACCAAAA  199
      | |||||||||| ||||||||||||||||||||||||| ||||||| |||
seq2  A-GAGTAGAGAC-AGACTGTCACTACCTTCTCAGATATTAACCACC-AAA  181

seq1  GAGGAGCAATTACCAAAC-TCTTCCATCAAGCTCATCTTGACTCACCCCC  248
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  GAGGAGCAATTACCAAACTTCTTCCATCAAGCTCATCTTGACTCACCCCT  231

seq1  TTTCTCGTTATGTTTCATTGTGGTGGAGTAGAAAAAACATAT-CCAGCCT  297
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTCTCGTTATGTTTCATTGTGGTGGAGTAGAAAAAACATATCCCAGCCT  281

seq1  TTACTCTTGAGTGCATGCATTTGTGAACTGCGGTGACCATTAGATTAGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTGAGTGCATGCATTTGTGAACTGCGGTGACCATTAGATTAGCC  331

seq1  CTAAATTTAGACAAGAGAATGTGAAAGTTTATGGAACCATGTGTATAGGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTAGACAAGAGAATGTGAAAGTTTATGGAACCATGTGTATAGGT  381

seq1  GTATATCTATATTCATGTGCTAAATGCCTGTTGAAACTACAAATATTGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCTATATTCATGTGCTAAATGCCTGTTGAAACTACAAATATTGCT  431

seq1  AGTAGAATATAAAAAATTTTGTTCCTTCACAAAACTCAGCATGGGGCTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAATATAAAAAATTTTGTTCCTTCACAAAACTCAGCATGGGGCTGG  481

seq1  AGAGATAGCTCAGCAGTTAAGAGCACTGACTGCTTTTCCAGAGGTCCTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAGCTCAGCAGTTAAGAGCACTGACTGCTTTTCCAGAGGTCCTGA  531

seq1  GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATAGGAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATAGGAT  581

seq1  CTGATGCCCTCTTCAGATGTGTCTGAAGACAGTTGCAGTGTACTCATAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCCCTCTTCAGATGTGTCTGAAGACAGTTGCAGTGTACTCATAAA  631

seq1  TAAAAAAATAAAAAAACTTTAAAAAAAATTAAGCATGATTTCTAAGTAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATAAAAAAACTTTAAAAAAAATTAAGCATGATTTCTAAGTAGA  681

seq1  AAAGCAATGTGTACCCACACTGAAACTCCAGTTGGTCCCAGAGAAGACGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATGTGTACCCACACTGAAACTCCAGTTGGTCCCAGAGAAGACGT  731

seq1  ATGGGTTGGTTGCATGTCTATGTGTAGTGGACAAAATGAGATAGGAACTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTGGTTGCATGTCTATGTGTAGTGGACAAAATGAGATAGGAACTC  781

seq1  TGGTCTCTGGTGAGGGCATTGGCTTCTGCCAGTCATGGCCTATTTAATAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTGGTGAGGGCATTGGCTTCTGCCAGTCATGGCCTATTTAATAG  831

seq1  GGTAAATAAAGATGTCCCCTGTAGTTACCATTTTTCCTAACCTCGAAAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATAAAGATGTCCCCTGTAGTTACCATTTTTCCTAACCTCGAAAAG  881

seq1  CAAATTTGGCTCTGCCTGCTTTCCTAAGTCATCGTGATGCATAGTCAGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTGGCTCTGCCTGCTTTCCTAAGTCATCGTGATGCATAGTCAGAA  931

seq1  CAACCTGAGCTCAGCTTCTATCTCTTTGCTAAAGAGAGGCCAATGACTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGAGCTCAGCTTCTATCTCTTTGCTAAAGAGAGGCCAATGACTTT  981

seq1  CCCCAGTGCAAAAAGGTTGATCTTCATGACCTGTTATGAGATAGAAGCTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGCAAAAAGGTTGATCTTCATGACCTGTTATGAGATAGAAGCTG  1031

seq1  TTTTTAGAAGGATCTAAATGTACCATCCCTGGAACAACAAAATAAGATTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGAAGGATCTAAATGTACCATCCCTGGAACAACAAAATAAGATTG  1081

seq1  TAAGGATGATTGTCTTTGGGAAGGAAAGGCAGTTGGCTGTGGGAAGGGGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATGATTGTCTTTGGGAAGGAAAGGCAGTTGGCTGTGGGAAGGGGT  1131

seq1  GAAAGAGAGACTGACCTTGCTCTGTGGAGTTTGTGGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGACTGACCTTGCTCTGTGGAGTTTGTGGAATTC  1172


seq1: chr10_17212511_17213694
seq2: B6Ng01-252N13.g_68_1233

seq1  GAATTCAAGTCCTAATGCTTGAACCTGAGAGGGCACATCCAAATTAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCCTAATGCTTGAACCTGAGAGGGCACATCCAAATTAAATT  50

seq1  ACTCTACGAAAGTCGTCTATCATGAGACTTGGTTGGACGCCTTAGATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACGAAAGTCGTCTATCATGAGACTTGGTTGGACGCCTTAGATGCT  100

seq1  CCTGTGTGGTGTAGATGATTAATTTGCTTCAGTTCCCAGGTAGCCATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGGTGTAGATGATTAATTTGCTTCAGTTCCCAGGTAGCCATCAC  150

seq1  ACTATGCAGAATGGTTACTACAAGTCTTTCAGACTTCACAGCATTTCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCAGAATGGTTACTACAAGTCTTTCAGACTTCACAGCATTTCCTA  200

seq1  AATACATTCCTCAGCTAGTAACTATTAATCCACACCTTCTAAAGGCTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTCCTCAGCTAGTAACTATTAATCCACACCTTCTAAAGGCTATG  250

seq1  TGTTCGTTCATCTCACTCTTCCCCAGAAGAACTGAGGAAATGGCAGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGTTCATCTCACTCTTCCCCAGAAGAACTGAGGAAATGGCAGGAAA  300

seq1  GACATATCTTAAATGCCATAATTGCTTTAGCTGTGAGCTTATCTCTCTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATCTTAAATGCCATAATTGCTTTAGCTGTGAGCTTATCTCTCTCG  350

seq1  ACTGAGTCAAAGCATGCTTAGGATGAGAGAGAAACATCGGAGCCTCCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTCAAAGCATGCTTAGGATGAGAGAGAAACATCGGAGCCTCCCAT  400

seq1  CAAAGATGAGAGAATGTACTGCTGAAGAGAAGCTTCTGGATCAGGAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGAGAGAATGTACTGCTGAAGAGAAGCTTCTGGATCAGGAAGGT  450

seq1  TAAAGCCAGGGAGAGAGCCAACAGGTCCTGAGACGCAAGGACACCCTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCAGGGAGAGAGCCAACAGGTCCTGAGACGCAAGGACACCCTGCC  500

seq1  CTACATTCCTGTTTTTTCAGGGAGGGGCTTCGACTGTCCACAGAGAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTCCTGTTTTTTCAGGGAGGGGCTTCGACTGTCCACAGAGAGCAT  550

seq1  TTGCCATTTTACAGACACTGACGGCTTCTTTCTAAGGCTCGAGAGTGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATTTTACAGACACTGACGGCTTCTTTCTAAGGCTCGAGAGTGTTA  600

seq1  TTAAAGTCCCTGATACATCAAACTAAACATCTGACAGTTAGATAGTGCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTCCCTGATACATCAAACTAAACATCTGACAGTTAGATAGTGCCG  650

seq1  GCAGATATCTTTGTTATCATGACCTTCACATTTTCAGTGTGGTCTCGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATATCTTTGTTATCATGACCTTCACATTTTCAGTGTGGTCTCGACC  700

seq1  AGAGATAAGTCCACTTCAGCCTCAGACTGCACAGGACTCCTCAAAGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAAGTCCACTTCAGCCTCAGACTGCACAGGACTCCTCAAAGGAGA  750

seq1  GCTGGGAATCTCCTGGTTTTCCCCACTTTTTCTTGTCCCTGACAAGAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAATCTCCTGGTTTTCCCCACTTTTTCTTGTCCCTGACAAGAAGG  800

seq1  CCTCCCCTTGATTTGTTTTTGTCCAGCCTCATTTTGATTTAT-GGCTTTT  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCTCCCCTTGATTTGTTTTTGTCCAGCCTCATTTTGATTTATGGGCTTTT  850

seq1  CTCCCCCACCCCCTCAACTCCCCCTAAGAATCCAGGAGAGAGAACCAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCACCCCCTCAACTCCCCCTAAGAATCCAGGAGAGAGAACCAAAA  900

seq1  GGAGGGGGCATCTGGAGAGGCCA-CACAGT-CCCCCCCCCATCATTGTTT  947
      ||||||||||||||||||||||| |||||| |||||||||||||||| ||
seq2  GGAGGGGGCATCTGGAGAGGCCACCACAGTCCCCCCCCCCATCATTG-TT  949

seq1  GAGGTTCCCAGGTGTCA-GATGA-GGTGAATTTACTCTGTCCAACAGCAA  995
      ||||||||||||||||| ||||| ||||||||||||||||||| ||||||
seq2  GAGGTTCCCAGGTGTCAGGATGAGGGTGAATTTACTCTGTCCACCAGCAA  999

seq1  TGAGAATTTTTAGTGTGAAGGAAGAAAGAAACATCCAGGGCTCAGTGAAG  1045
      ||||||||||||||||||  | ||||||||||||||||| ||||||| ||
seq2  TGAGAATTTTTAGTGTGA--GGAGAAAGAAACATCCAGGCCTCAGTG-AG  1046

seq1  CCGTTGGTATATTTTTCAATTAATACAGCTTTTGTACTTTCCAAAGTTTA  1095
      ||||  ||||| ||||||  |||||||||||||||||||    |||||||
seq2  CCGT--GTATA-TTTTCA--TAATACAGCTTTTGTACTT---CAAGTTTA  1088

seq1  CGTAGGTGACAAGACTTCATCCACAAAAGATCTTCAGTTTCCCCTAAGCT  1145
      ||||||||||| ||| |||||||| ||||||| ||||||  |||| ||||
seq2  CGTAGGTGACAGGAC-TCATCCAC-AAAGATC-TCAGTT--CCCT-AGCT  1132

seq1  CAGTATCATTAAAAAAAAAAAAATCCCAGAAAGGAATGC  1184
      ||| |||      | | ||||||||| ||||||||||||
seq2  CAGGATC-----CATAGAAAAAATCCAAGAAAGGAATGC  1166


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