BAC Information

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BAC

Clone NameB6Ng01-253E19
Chromosome10 (Build37)12 (Build37)
Map Location 89,384,373 - 89,385,528111,543,332 - 111,544,262
singlet/doubletsingletsinglet
Overlap geneAnks1b
Upstream geneSlc5a8, Tmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, LOC100043039
Downstream geneLOC544719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253E19.bB6Ng01-253E19.g
ACCGA060074GA060075
length1,140938
definitionB6Ng01-253E19.b B6Ng01-253E19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,384,373 - 89,385,528)(111,543,332 - 111,544,262)
sequence
gaattctcagtgatgttcttcttccacaaagtccccaccaactccaagaa
agttattcctcctaacagttctactccttataagcgtatgagggcttttt
tttttttattcaaaccaccatagatgtggtggagtcttcacaaattcact
actaatttagcattcatagataagaaagctaagagatagcataggtggga
aaggttcatagtgaatgaaagcagtgagcttgaggtatgcgctgacagag
tgaaccaggcatttgatgataatggtgaccatagtcaaagaataggcagt
ttcgaaatgtgggaaggtcttcaggtgaaactgttaattatgcatataca
ctgtacaggtggcatcatctttgggcacataagatgaaaaataaatcgaa
ttttgacatagctttggagaatttttgttttcatcttttattaccatcca
tgctagtcaggattattataactcccaagagtctctccccttggagtgca
catcctgtgtgaatcctcaccccttcagcgtgggcatgacttgcgaatat
gctgagtcattatgtctgtgattagatcaccaagcaagtgcctttatctg
gatagacccgggtctttcttttaaagcagaaagaattctcaggatagaag
gagggggccctgtctcagggtccacttgtcaagagttacaaatggcatct
aggagataagtgtagctcctggtcaacaaccagcaaattgtggggggtgt
cagtattgtaatgggtttaccctgaattcatgctaaattcataccattgc
aaggatatgaatttgcaatagttctggaagaaagagggacacatgctttc
tggaagatattgatacgcctggtaagaccccaagaaaaaatagggctgac
caaccccagactcttcacgagaaatcttgagatgataaatttgtattgtt
gagctctcaactgtacaatgagttgttagcactttgagagatgacactgt
acatgtgcttcctaagatgccgggtctgtctcactttgagtcttttgctg
aggcatactatatttggtgatgatcgtaagggtgctggtcttacttgtca
atatttaagcccattccacaaaacaactatgtatcagact
gaattctgttaggagcaggtgtggcggcagtcctaaaggcgccagggact
gtagctaagtcgtatgacttgcacctgacttcctcatataagccacaaac
atcttgagtgctgcgcaggtgtaccaggatacaggtgaatccagtttgat
ggagatatgcccctgctgccctgattagctgaagctgcgtgcctggtgag
gtggcgtggcctgctgtgcgtggatgggaactgagagtataaaaggagtg
agaggcccagggttcgggggagatatataaacaagggggagatataaaaa
caagggagatataaaaacaggggagatataaaaacaggggagataaaaac
aggggagatataaacaggagagatataaaaacaagggagatatataaaca
agggggagatataaaaacaagggagatataaacaggggagatataaacaa
gggagatataaacaggggagatataaacaggggagatataaacaggggag
atataaacaagggagatataaacaagggagatatatggagaaagaagaaa
caggactgaataaatgtgtgcagaaggatcctgtagcagcgtcgttcttg
ctggcgagttgggcgcgcgcaacaagtggtgccgaaacccgggacaagag
acaccttcaggcacgagcgaagaccccctgctacagggaggattcagaac
tgcataacggggaagaaggggttaataaaggttcccgtgaaacagactgt
tgagaaggatctggtgtggattcagaactcttcagctggggaacagtact
gatgaagagaaagaagaaagatgaagactgaataaactgctgttagaagg
actggtggtcgcatcgttcttgctggtcgagagcgggcgcgacatttggt
gggcccgtacggggaaccgactcccccaccgagttcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_89384373_89385528
seq2: B6Ng01-253E19.b_43_1182

seq1  GAATTCTCAGTGATGTTCTTCTTCCACAAAGTCCCCACCAACTCCAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTGATGTTCTTCTTCCACAAAGTCCCCACCAACTCCAAGAA  50

seq1  AGTTATTCCTCCTAACAGTTCTACTCCTTATAAGCGTATGAGGGCTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTCCTCCTAACAGTTCTACTCCTTATAAGCGTATGAGGGCTTTTT  100

seq1  TTTTTTTATTCAAACCACCATAGATGTGGTGGAGTCTTCACAAATTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTCAAACCACCATAGATGTGGTGGAGTCTTCACAAATTCACT  150

seq1  ACTAATTTAGCATTCATAGATAAGAAAGCTAAGAGATAGCATAGGTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTAGCATTCATAGATAAGAAAGCTAAGAGATAGCATAGGTGGGA  200

seq1  AAGGTTCATAGTGAATGAAAGCAGTGAGCTTGAGGTATGCGCTGACAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCATAGTGAATGAAAGCAGTGAGCTTGAGGTATGCGCTGACAGAG  250

seq1  TGAACCAGGCATTTGATGATAATGGTGACCATAGTCAAAGAATAGGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAGGCATTTGATGATAATGGTGACCATAGTCAAAGAATAGGCAGT  300

seq1  TTCGAAATGTGGGAAGGTCTTCAGGTGAAACTGTTAATTATGCATATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAATGTGGGAAGGTCTTCAGGTGAAACTGTTAATTATGCATATACA  350

seq1  CTGTACAGGTGGCATCATCTTTGGGCACATAAGATGAAAAATAAATCGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAGGTGGCATCATCTTTGGGCACATAAGATGAAAAATAAATCGAA  400

seq1  TTTTGACATAGCTTTGGAGAATTTTTGTTTTCATCTTTTATTACCATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACATAGCTTTGGAGAATTTTTGTTTTCATCTTTTATTACCATCCA  450

seq1  TGCTAGTCAGGATTATTATAACTCCCAAGAGTCTCTCCCCTTGGAGTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTCAGGATTATTATAACTCCCAAGAGTCTCTCCCCTTGGAGTGCA  500

seq1  CATCCTGTGTGAATCCTCACCCCTTCAGCGTGGGCATGACTTGCGAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGTGTGAATCCTCACCCCTTCAGCGTGGGCATGACTTGCGAATAT  550

seq1  GCTGAGTCATTATGTCTGTGATTAGATCACCAAGCAAGTGCCTTTATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTCATTATGTCTGTGATTAGATCACCAAGCAAGTGCCTTTATCTG  600

seq1  GATAGACCCGGGTCTTTCTTTTAAAGCAGAAAGAATTCTCAGGATAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGACCCGGGTCTTTCTTTTAAAGCAGAAAGAATTCTCAGGATAGAAG  650

seq1  GAGGGGGCCCTGTCTCAGGGTCCACTTGTCAAGAGTTACAAATGGCATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGCCCTGTCTCAGGGTCCACTTGTCAAGAGTTACAAATGGCATCT  700

seq1  AGGAGATAAGTGTAGCTCCTGGTCAACAACCAGCAAATTGTGGGGGGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATAAGTGTAGCTCCTGGTCAACAACCAGCAAATTGTGGGGGGTGT  750

seq1  CAGTATTGTAATGGGTTTACCCTGAATTCATGCTAAATTCATACCATTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTGTAATGGGTTTACCCTGAATTCATGCTAAATTCATACCATTGC  800

seq1  AAGGATATGAATTTGCAATAGTTCTGGAAGAAAGAGGGACACATGCTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATGAATTTGCAATAGTTCTGGAAGAAAGAGGGACACATGCTTTC  850

seq1  TGGAAGATATTGATACGCCTGGTAAGACCCCAAGAAAAAATAGGGCTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGATATTGATACGCCTGGTAAGACCCCAAGAAAAAATAGGGCTGAC  900

seq1  CAACCCCAGACTCTTCACGAGAAATCTTGAGATGATAAATTTGTATTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCAGACTCTTCACGAGAAATCTTGAGATGATAAATTTGTATTGTT  950

seq1  GAAGCTCTCAACTGTACAATGAGTTGTTAAGCACTTTGAGAAGAATGACC  1000
      | |||||||||||||||||||||||||| ||||||||||||   |||| |
seq2  G-AGCTCTCAACTGTACAATGAGTTGTT-AGCACTTTGAGA--GATGA-C  995

seq1  ACTGTACATGTGCTTTCCTAAAGATGCCCGGGTCTTGTCTCAACTTTGAG  1050
      ||||||||||||| ||||| |||||| ||||||| |||||| ||||||||
seq2  ACTGTACATGTGC-TTCCT-AAGATG-CCGGGTC-TGTCTC-ACTTTGAG  1040

seq1  TCTTTTGCTGAGGCATACTATATTGTGGAATGATTTCTTTTATGTGT-CT  1099
      ||||||||||||||||||||||||  |  ||||    |  || | || ||
seq2  TCTTTTGCTGAGGCATACTATATTTGGTGATGA----TCGTAAGGGTGCT  1086

seq1  GGTTCTACTTTGTCATTATTTAAGGCCCATTCCACAAACCAACTATGTAT  1149
      |||  ||| |||||| ||||||| |||||||||||||| |||||||||||
seq2  GGTCTTAC-TTGTCAATATTTAA-GCCCATTCCACAAAACAACTATGTAT  1134

seq1  CAAGACT  1156
      | |||||
seq2  C-AGACT  1140

seq1: chr12_111543332_111544262
seq2: B6Ng01-253E19.g_75_927

seq1  GGAGCGGGTGTGGCGGCAGTCCCAAAGGCGCCAGGGACTGCAGCTAAGTC  50
      ||||| |||||||||||||||| ||||||||||||||||| |||||||||
seq2  GGAGCAGGTGTGGCGGCAGTCCTAAAGGCGCCAGGGACTGTAGCTAAGTC  50

seq1  ATATGACTTGCACCTGACTTCCTCATATAAGACACAAACATCTTGAGTGC  100
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTATGACTTGCACCTGACTTCCTCATATAAGCCACAAACATCTTGAGTGC  100

seq1  TGCGCAGGTGTACCAGGATACAGGTGAATCCAATTTTGATGGAGATTTGC  150
      ||||||||||||||||||||||||||||||| | |||||||||||| |||
seq2  TGCGCAGGTGTACCAGGATACAGGTGAATCC-AGTTTGATGGAGATATGC  149

seq1  CCCTGCTGCCCTGATTAGCTGAAGCTGCGTGCCTGGTGAGGTGGCGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGCCCTGATTAGCTGAAGCTGCGTGCCTGGTGAGGTGGCGTGGC  199

seq1  CTGCTGTGCGTGGATGTGAACTGAGAGTATATAA-GAGTGAGAGGCCC-G  248
      |||||||||||||||| |||||||||||||| || ||||||||||||| |
seq2  CTGCTGTGCGTGGATGGGAACTGAGAGTATAAAAGGAGTGAGAGGCCCAG  249

seq1  GGTTAGAGGGAGGATTATTATTCGAGAGAGGATTGTTATTA----TTGGG  294
      |||| | |||| |||   ||  | || | |||  | ||| |      |||
seq2  GGTTCGGGGGA-GATATATAAACAAG-GGGGA--GATATAAAAACAAGGG  295

seq1  AGATATAAAAACAAGGGAGATAT--AAACAAGGGAGATATAAACAAGGGA  342
      ||||||||||||| |||||||||  ||||| |||||||| ||||| ||||
seq2  AGATATAAAAACAGGGGAGATATAAAAACAGGGGAGATAAAAACAGGGGA  345

seq1  GATATAAACAAGGGAGATATAAAAACAAGGGAGATATAAAAACAA--GGG  390
      |||||||||| | ||||||||||||||||||||||||| ||||||  |||
seq2  GATATAAACAGGAGAGATATAAAAACAAGGGAGATATATAAACAAGGGGG  395

seq1  AGATATAAAAACAAGGGAGATATAAAAACAAGGGAGATATAAAAACAAGG  440
      |||||||||||||||||||||||  ||||| |||||||||  ||||||||
seq2  AGATATAAAAACAAGGGAGATAT--AAACAGGGGAGATAT--AAACAAGG  441

seq1  GAGATATAAACAAGGGAGATATAAACAGGGGAGATATAAACAGGGGAGAT  490
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAGATATAAACAGGGGAGATATAAACAGGGGAGATATAAACAGGGGAGAT  491

seq1  ATAAACAAGGGAGATATAAACAAGGGAGATATATGGAGAAAGAAGAAACA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAGGGAGATATAAACAAGGGAGATATATGGAGAAAGAAGAAACA  541

seq1  GGACTGAATAAATGTGTGCAGAAGGATCCTGTAGCAGCGTCGTTCTTCCT  590
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGACTGAATAAATGTGTGCAGAAGGATCCTGTAGCAGCGTCGTTCTTGCT  591

seq1  GGCCAGTTGAGCGCGCGTAAGAGTTGGTGCCGGAAACCCGGGAAGAAAAA  640
      ||| ||||| ||||||| || |  |||||||                   
seq2  GGCGAGTTGGGCGCGCGCAACAAGTGGTGCC-------------------  622

seq1  CTCGGGACGGGACGAGAAAATCCGGGACGAGAAGACCCGGGGCGAGAAGA  690
                                                        
seq2  --------------------------------------------------  622

seq1  TCTGAGACGAGAAACCCGGGACAAGAAACATCTTCAGGCACAAGCGAAGA  740
                |||||||||||||||| ||| |||||||||| ||||||||
seq2  ----------GAAACCCGGGACAAGAGACACCTTCAGGCACGAGCGAAGA  662

seq1  CCCCCTGCTACAGGGAGGATTCAGAACTGCATAACGGGGAAGAAGGGGTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGCTACAGGGAGGATTCAGAACTGCATAACGGGGAAGAAGGGGTT  712

seq1  AATAAAGGTTCCCGTGAAACAGACTGTTGAGAAGGATCCGGCGTGGATTC  840
      |||||||||||||||||||||||||||||||||||||| || ||||||||
seq2  AATAAAGGTTCCCGTGAAACAGACTGTTGAGAAGGATCTGGTGTGGATTC  762

seq1  AGAACTCTTCAGCTGGGGAACGGTACTGATGAAGAGAAAGAAGAAAGATG  890
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAACTCTTCAGCTGGGGAACAGTACTGATGAAGAGAAAGAAGAAAGATG  812

seq1  AAGACTGAGTAAACTGCTGTTAGAAGGACTGGTGGTCGCAT  931
      |||||||| ||||||||||||||||||||||||||||||||
seq2  AAGACTGAATAAACTGCTGTTAGAAGGACTGGTGGTCGCAT  853