BAC Information

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BAC

Clone NameB6Ng01-253G01
Chromosome10 (Build37)
Map Location 34,830,528 - 34,951,027
singlet/doubletdoublet
Overlap genenone
Upstream geneA630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
Downstream geneLOC100041585, LOC667860
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253G01.bB6Ng01-253G01.g
ACCGA060128GA060129
length1,1521,089
definitionB6Ng01-253G01.b B6Ng01-253G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,949,873 - 34,951,027)(34,830,528 - 34,831,624)
sequence
gaattcaggaagaatgaattgaattgaattgaattgaattgaattgaatt
gaattgaattgaattgaattgaattgaattgaattgaattgaaaaaagtg
aatgggggtactcaggaatatttgaacgtggaaaaggagaaataaaaatg
tagctaacattacttcagtacttatatataaaattctcaataaaacaaga
agcaaagatcatgataggatatgatagatagagattatatttataagtag
aaatacatgctcataaatcctccatattgcacagaaaaaggaaaataatt
atctttattctggtttgatgtctattactctttatttttaatggattttt
ctatttgattaaactgtcttatagtagcttctggtgctattaaacaataa
agtgtttgtttctgagatagggagcattgttatctctaattctaagagtt
tcattgatatcagtgggaggttgatggggcaatcctgcatgtggtagcaa
taaaaggaattcctgtttaacaaggatctggagtcctctcagatggggaa
ttctgttaagtccctcctgttgagatattttaattcagcatgactgccaa
tactaattaatgtgtgcagtgtttacacaggttatggaagaggcactatt
tgtttttagaaaagagaatcacttgaataaactaaagttgatcatactta
gatgcaaaagccttgagtgatttaaaaaaaaaaaaaaaaaaacacccttc
tgaggtgtatgcaactattggttgtttcctgcaatctcttccactgcaga
tgtgggagcacaattgcatttccatacttgttgtctggaaagaggggagg
aaataaacattacagagaaagaagagaaataaggaggatgaactatgcac
aggggttctacagagttccataaaccagtaaactgctcaggagatcatca
accaagcaatttgattttattaattgaaaatattgtgtgagagagagtga
gaactgagacaagagagtagtagggtgcttggactattgatcacttaatg
accagcacagcaccttactagcacagtaaaatagtgggtgctcacaatct
ttggagccaaaccgagcctgtctatttgtaccaaaatctgtttacagaga
aa

gaattctttaatgcatatgaagttccagaggggagtattttttttttctt
ctctcttgtggactgccatctcagaatcttttagataaagttaggttgat
aaatgatcaaagctgtgaaaccaaatcataaaagaactatcctttcattt
ttcatgttgaagaaggaggcatttaataaagcaatgtctgaggaatgcat
ggaagtgtttttccattaccaaagaaagcttccacacttacttgtttatc
tgaaaaccatgatgtacgtaatttatgaatgtttaatatctttgtgggtc
caatttttctaggacaaaaagctggctgtaaattcagatatcagatttta
aaatctcttcaaatttgatcaaagttaaatcaaaagcatcacaagccttt
gtatgatcaatgtttcctagcaacttagggccttggattttttttttatc
tgaattcatgttcagttgtcttagactactttatgaatgctgtttctctt
gaaattgttgacttactcttttctattttatctttactttcttcttaaga
aacaatatctggatgtcttttaagctgcttaaatccctccatagaaattc
atgacctagtctgagggtatgtgcaagcttcaatgaaaaacaattcagcc
caattcaaataaaattgttaggttagcatggaatgtttctaaatacttcg
taaaattaaaaaagtagttttattttcatttcattttctaaaaaataaag
tcaaaaattacttgtctaaatatatgcatatagctgctaaatatcaccca
gctctattcttaatcatgacaattaaatttttaaaatgttaatattttat
tagatattttcttcctttacattttaaacgctatcccctttcatagtttt
ctcttcgaaagtccactatacccttcccctgccctgttccccaacccacc
cactcttgcttctggccctggcatttcctgtactggggcattatatcttc
gcagacaggaggggcctctcatccattgatgcgactaggcatcttctgct
acaatatgcactagagaacataagctctggggggtactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_34949873_34951027
seq2: B6Ng01-253G01.b_42_1193 (reverse)

seq1  TTTCTCCTGTTAAACAGGTTTTGTGTACAATTAGACA-GCTCTGTTT-GC  48
      ||||| ||| ||||||| ||||| |||||| |||||| |||| |||| ||
seq2  TTTCT-CTG-TAAACAGATTTTG-GTACAAATAGACAGGCTCGGTTTGGC  47

seq1  TCCAAAGA-TGTGAGCA-CCACTATTTTTACTGTTGCTAGT-AGGTGCTG  95
      |||||||| |||||||| |||||| |||||||| ||||||| ||||||||
seq2  TCCAAAGATTGTGAGCACCCACTA-TTTTACTG-TGCTAGTAAGGTGCTG  95

seq1  TGCTGGTCATTATGTGGTTCATAGTCCAAAGCACCCTACTACTCTCTTGT  145
      |||||||||||| ||| |  ||||||| ||||||||||||||||||||||
seq2  TGCTGGTCATTAAGTGATCAATAGTCC-AAGCACCCTACTACTCTCTTGT  144

seq1  CTTCAGTTCTCACTCTCTCTCACACATATTTTTCAATTAATAGATTCAAA  195
      | ||||||||||||||||||||||||   ||||||||||||| | |||||
seq2  C-TCAGTTCTCACTCTCTCTCACACAATATTTTCAATTAATAAAATCAAA  193

seq1  TTGCTTGG-TGATGATCT-CTGAGCAGTTTACTGGTTTATGGAACTCTGT  243
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  TTGCTTGGTTGATGATCTCCTGAGCAGTTTACTGGTTTATGGAACTCTGT  243

seq1  AGAACCCCTGTGCATAGTTCATCCTCCCTTATTTCTCTTCTTTCTCTGTA  293
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAACCCCTGTGCATAGTTCATCCT-CCTTATTTCTCTTCTTTCTCTGTA  292

seq1  ATGTTTATTTCCTCCCCTCTTTCCAGACAACAAGTATGGAAATGCAATTG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATTTCCTCCCCTCTTTCCAGACAACAAGTATGGAAATGCAATTG  342

seq1  TGCTCCCACATCTGCAGTGGAAGAGATTGCAGGAAACAACCAATAGTTGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCACATCTGCAGTGGAAGAGATTGCAGGAAACAACCAATAGTTGC  392

seq1  ATACACCTCAGAAGGGTGTTTTTTTTTTTTTTTTTTTTTAAATCACTCAA  443
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  ATACACCTCAGAAGGGTG--TTTTTTTTTTTTTTTTTTTAAATCACTCAA  440

seq1  GGCTTTTGCATCTAAGTATGATCAACTTTAGTTTATTCAAGTGATTCTCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTGCATCTAAGTATGATCAACTTTAGTTTATTCAAGTGATTCTCT  490

seq1  TTTCTAAAAACAAATAGTGCCTCTTCCATAACCTGTGTAAACACTGCACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAAACAAATAGTGCCTCTTCCATAACCTGTGTAAACACTGCACA  540

seq1  CATTAATTAGTATTGGCAGTCATGCTGAATTAAAATATCTCAACAGGAGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTAGTATTGGCAGTCATGCTGAATTAAAATATCTCAACAGGAGG  590

seq1  GACTTAACAGAATTCCCCATCTGAGAGGACTCCAGATCCTTGTTAAACAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAACAGAATTCCCCATCTGAGAGGACTCCAGATCCTTGTTAAACAG  640

seq1  GAATTCCTTTTATTGCTACCACATGCAGGATTGCCCCATCAACCTCCCAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTATTGCTACCACATGCAGGATTGCCCCATCAACCTCCCAC  690

seq1  TGATATCAATGAAACTCTTAGAATTAGAGATAACAATGCTCCCTATCTCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCAATGAAACTCTTAGAATTAGAGATAACAATGCTCCCTATCTCA  740

seq1  GAAACAAACACTTTATTGTTTAATAGCACCAGAAGCTACTATAAGACAGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAACACTTTATTGTTTAATAGCACCAGAAGCTACTATAAGACAGT  790

seq1  TTAATCAAATAGAAAAATCCATTAAAAATAAAGAGTAATAGACATCAAAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAAATAGAAAAATCCATTAAAAATAAAGAGTAATAGACATCAAAC  840

seq1  CAGAATAAAGATAATTATTTTCCTTTTTCTGTGCAATATGGAGGATTTAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAAAGATAATTATTTTCCTTTTTCTGTGCAATATGGAGGATTTAT  890

seq1  GAGCATGTATTTCTACTTATAAATATAATCTCTATCTATCATATCCTATC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGTATTTCTACTTATAAATATAATCTCTATCTATCATATCCTATC  940

seq1  ATGATCTTTGCTTCTTGTTTTATTGAGAATTTTATATATAAGTACTGAAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTTTGCTTCTTGTTTTATTGAGAATTTTATATATAAGTACTGAAG  990

seq1  TAATGTTAGCTACATTTTTATTTCTCCTTTTCCACGTTCAAATATTCCTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTAGCTACATTTTTATTTCTCCTTTTCCACGTTCAAATATTCCTG  1040

seq1  AGTACCCCCATTCACTTTTTTCAATTCAATTCAATTCAATTCAATTCAAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCCCATTCACTTTTTTCAATTCAATTCAATTCAATTCAATTCAAT  1090

seq1  TCAATTCAATTCAATTCAATTCAATTCAATTCAATTCAATTCAATTCATT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCAATTCAATTCAATTCAATTCAATTCAATTCAATTCAATTCATT  1140

seq1  CTTCCTGAATTC  1155
      ||||||||||||
seq2  CTTCCTGAATTC  1152


seq1: chr10_34830528_34831624
seq2: B6Ng01-253G01.g_61_1149

seq1  GAATTCTTTAATGCATATGAAGTTCCAGAGGGGAGTATTTTTTTTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAATGCATATGAAGTTCCAGAGGGGAGTATTTTTTTTTTCTT  50

seq1  CTCTCTTGTGGACTGCCATCTCAGAATCTTTTAGATAAAGTTAGGTTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTGTGGACTGCCATCTCAGAATCTTTTAGATAAAGTTAGGTTGAT  100

seq1  AAATGATCAAAGCTGTGAAACCAAATCATAAAAGAACTATCCTTTCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATCAAAGCTGTGAAACCAAATCATAAAAGAACTATCCTTTCATTT  150

seq1  TTCATGTTGAAGAAGGAGGCATTTAATAAAGCAATGTCTGAGGAATGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTGAAGAAGGAGGCATTTAATAAAGCAATGTCTGAGGAATGCAT  200

seq1  GGAAGTGTTTTTCCATTACCAAAGAAAGCTTCCACACTTACTTGTTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGTTTTTCCATTACCAAAGAAAGCTTCCACACTTACTTGTTTATC  250

seq1  TGAAAACCATGATGTACGTAATTTATGAATGTTTAATATCTTTGTGGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCATGATGTACGTAATTTATGAATGTTTAATATCTTTGTGGGTC  300

seq1  CAATTTTTCTAGGACAAAAAGCTGGCTGTAAATTCAGATATCAGATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTCTAGGACAAAAAGCTGGCTGTAAATTCAGATATCAGATTTTA  350

seq1  AAATCTCTTCAAATTTGATCAAAGTTAAATCAAAAGCATCACAAGCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTTCAAATTTGATCAAAGTTAAATCAAAAGCATCACAAGCCTTT  400

seq1  GTATGATCAATGTTTCCTAGCAACTTAGGGCCTTGGATTTTTTTTTTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATCAATGTTTCCTAGCAACTTAGGGCCTTGGATTTTTTTTTTATC  450

seq1  TGAATTCATGTTCAGTTGTCTTAGACTACTTTATGAATGCTGTTTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCATGTTCAGTTGTCTTAGACTACTTTATGAATGCTGTTTCTCTT  500

seq1  GAAATTGTTGACTTACTCTTTTCTATTTTATCTTTACTTTCTTCTTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGTTGACTTACTCTTTTCTATTTTATCTTTACTTTCTTCTTAAGA  550

seq1  AACAATATCTGGATGTCTTTTAAGCTGCTTAAATCCCTCCATAGAAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATCTGGATGTCTTTTAAGCTGCTTAAATCCCTCCATAGAAATTC  600

seq1  ATGACCTAGTCTGAGGGTATGTGCAAGCTTCAATGAAAAACAATTCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTAGTCTGAGGGTATGTGCAAGCTTCAATGAAAAACAATTCAGCC  650

seq1  CAATTCAAATAAAATTGTTAGGTTAGCATGGAATGTTTCTAAATACTTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAAATAAAATTGTTAGGTTAGCATGGAATGTTTCTAAATACTTCG  700

seq1  TAAAATTAAAAAAGTAGTTTTATTTTCATTTCATTTTCTAAAAAATAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTAAAAAAGTAGTTTTATTTTCATTTCATTTTCTAAAAAATAAAG  750

seq1  TCAAAAATTACTTGTCTAAATATATGCATATAGCTGCTAAATATCACCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATTACTTGTCTAAATATATGCATATAGCTGCTAAATATCACCCA  800

seq1  GCTCTATTCTTAATCATGACAATTAAATTTTTAAAATGTTAATATTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATTCTTAATCATGACAATTAAATTTTTAAAATGTTAATATTTTAT  850

seq1  TAGATATTTTCTTCCTTTACATTTTAAACGCTATCCCCTTTCATAGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTTTCTTCCTTTACATTTTAAACGCTATCCCCTTTCATAGTTTT  900

seq1  CTCTTCGAAAGTCCACTATACCCTTCCCCTGCCCTGTTCCCCAACCCACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCGAAAGTCCACTATACCCTTCCCCTGCCCTGTTCCCCAACCCACC  950

seq1  CACTCTTGCTTCCTGGCCCTGGCATTTCCCTGTACTGGGGCATATAATCT  1000
      ||||||||||| ||||||||||||||| |||||||||||||||   ||||
seq2  CACTCTTGCTT-CTGGCCCTGGCATTT-CCTGTACTGGGGCATTATATCT  998

seq1  TCGCAAGACCAAGGAGGGGCCTCTCATCCCATTGATTGCCGACTAGGCCA  1050
      |||| ||||  |||||||||||||||| ||||||||   |||||||| ||
seq2  TCGC-AGAC--AGGAGGGGCCTCTCAT-CCATTGAT--GCGACTAGG-CA  1041

seq1  TCTTCTGCTAC-ATATGCAACTAGAG-ACATAAGCTCTGGGGGGTACTG  1097
      ||||||||||| |||||| ||||||| ||||||||||||||||||||||
seq2  TCTTCTGCTACAATATGC-ACTAGAGAACATAAGCTCTGGGGGGTACTG  1089


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