BAC Information

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BAC

Clone NameB6Ng01-253M03
Chromosome10 (Build37)
Map Location 10,868,903 - 11,034,389
singlet/doubletdoublet
Overlap geneShprh, Fbxo30
Upstream geneLOC665110, 9130014G24Rik, Rab32, EG382450, Grm1
Downstream geneEpm2a, EG666732, LOC100039343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253M03.bB6Ng01-253M03.g
ACCGA060402GA060403
length1,0641,085
definitionB6Ng01-253M03.b B6Ng01-253M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,033,320 - 11,034,389)(10,868,903 - 10,870,001)
sequence
gaattcactgggcaaaagataatggcatgtttcataggcacctctgtttt
ctgtcctttaagcagtgcccttcccctctgagactgaaggggtgtggtta
ttttagatgatagggatacagcctagctgaagaactgcatttttatttca
gtgttttatccagaaggtacttgcttgtcacttagatggggctcaaggaa
aacacttgaagagtccctgcacagccttgataccatgaacaccaggggcc
ccaggatagctcccaaacaaaaaactacgagaaatcacgtattagaacag
aagtcagagctgaggaaaatgccagtaagggacactgtaaatgcaccaat
gcagtaataatgcttctttgaactactagaagttaatacctcaggaatgt
gaaattacatcaccttccagatctttttctggtttcttataatcaacttc
ctataagcatcacatgccctaagctcaacaacaaatcgccttttcaagcc
actcactggttttccagaaatatctgacagaggaacaacaaaaagaagtc
aaagtcaatatgtagagaatgataataatcaaacacccacttttctggga
caagcacaagaacaattatcactgtggctccatttactgtcacagattta
tgcattatttaaagtgcttaaaggagtgtgaagtcataataatttttctt
ttattttgaattattaatgcagaaggaaataaagacatttgagaggtaga
tcatctttgtaataaacaaagacactaatctaagtgttcttgtttgagta
tagcacacgccgctaaaaacaaattaggaactggtaaactaaagtacagg
taaaaaatgaagactcagcttagttcatatattaacatgaaactaactct
gaactttatatactgtatcttttaaaattgaggcaccacttatactagac
attcactaattgtttattaatatacaggtctcgcatatccaggctggcct
ttaaaatttaatatatatatgccaccacttggcttatgcagcgctggaga
tgatcaggacttca
gaattccgttttatgtaactttctgcctttttatgaaaaccacaactcac
atcaagcctaccgctctggcaaagagccccgccctctctggcaagaggtc
ccgccccttctttcgggccccgcccatcctgcatttgctaaagccacggg
aggcggggaaaagagagaggcacaaccaccgcgagacttaaaccgtcttc
taccgggacctcagggacgggacatgcgcagaggtgctttttgaagccaa
caccggaaagaggggcggagcgtcccgactggtcctgcgcgttcgcctgg
agcgagcgctcctgctggcctcctcagctggcgctggcggcttccggcct
gggtgccaggcttcacccagcgtgcagcgcgcatgcgcaactcccgcagg
tgagtgtggcgactgtgggcccgggatctgcagcctgcgaggagggccgg
gcccggcgacaggtgcctgcagagcggctgaggtaggtgagggtgcgtgc
gggctctggggttagagtcgcggcggagggaggctggctctgcgcgtcag
ggaaactccgagggctcctgcgcagctccgggatccggagtgatcggccc
tgcgaggccccgcggctcggccccagcccggacgtgggccgagcccttct
cgcgtgggacgggtgcttgctgcccacgcttgcgtgctgaggccctgtca
cgagctgtccctccggctccttcttcgaggataacttgccttgcagctgg
cggtgcgtgggacgacaggtagctgggagggatgcagaggccgccaagtt
aggctggcaaactctcaagcattacagtcgcctgcagaagcgccctggct
cctgtgcattgtgtgcactttgacgctgcagtagcgctaggttggtgaac
gaagatgttggtttctggttaaggtaccctgtgggaggaacggtattgtt
acagtcttgccttttcaccgtgtgccttttaatccactgctgaatttatc
atgcaggtctatgttttctctacgtgttgccttgcctctgtattgctagg
tcccatgaatcgctacaccacttattctcttgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_11033320_11034389
seq2: B6Ng01-253M03.b_49_1112 (reverse)

seq1  TGAAGTCCTGGATTCAATCTCCAGCGCTGCATAAGCCAAGT-GTGGCAAT  49
      ||||||||| |||   ||||||||||||||||||||||||| ||||| ||
seq2  TGAAGTCCT-GAT--CATCTCCAGCGCTGCATAAGCCAAGTGGTGGC-AT  46

seq1  ATATATA-TAAATTTT-AAGGCCAGCCTGGGATATGCGAGAACCTGTATA  97
      ||||||| |||||||| ||||||||||| ||||||||||| |||||||||
seq2  ATATATATTAAATTTTAAAGGCCAGCCT-GGATATGCGAG-ACCTGTATA  94

seq1  TTAATAAACAATTAGTGAATGTTCTAGTATAAGTGGTGCCTCAATTTTAA  147
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTAATAAACAATTAGTGAATG-TCTAGTATAAGTGGTGCCTCAATTTTAA  143

seq1  AAGATACAGTATATAAAGTTCAGAGTTAGTTTCATGTTAATATATGAACC  197
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGATACAGTATATAAAGTTCAGAGTTAGTTTCATGTTAATATATGAA-C  192

seq1  TAAGCTGAGTCTTCATTTTTTACCTGTACTTTAGTTTACCAGTTCCTAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGAGTCTTCATTTTTTACCTGTACTTTAGTTTACCAGTTCCTAAT  242

seq1  TTGTTTTTTAGCGGCGTGTGCTATACTCAAACAAGAACACTTAGATTAGT  297
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTG-TTTTTAGCGGCGTGTGCTATACTCAAACAAGAACACTTAGATTAGT  291

seq1  GTCTTTGTTTATTACAAAGATGATCTACCTCTCAAATGTCTTTATTTCCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTTTATTACAAAGATGATCTACCTCTCAAATGTCTTTATTTCCT  341

seq1  TCTGCATTAATAATTCAAAATAAAAGAAAAATTATTATGACTTCACACTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTAATAATTCAAAATAAAAGAAAAATTATTATGACTTCACACTC  391

seq1  CTTTAAGCACTTTAAATAATGCATAAATCTGTGACAGTAAATGGAGCCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGCACTTTAAATAATGCATAAATCTGTGACAGTAAATGGAGCCAC  441

seq1  AGTGATAATTGTTCTTGTGCTTGTCCCAGAAAAGTGGGTGTTTGATTATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAATTGTTCTTGTGCTTGTCCCAGAAAAGTGGGTGTTTGATTATT  491

seq1  ATCATTCTCTACATATTGACTTTGACTTCTTTTTGTTGTTCCTCTGTCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCTCTACATATTGACTTTGACTTCTTTTTGTTGTTCCTCTGTCAG  541

seq1  ATATTTCTGGAAAACCAGTGAGTGGCTTGAAAAGGCGATTTGTTGTTGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTGGAAAACCAGTGAGTGGCTTGAAAAGGCGATTTGTTGTTGAG  591

seq1  CTTAGGGCATGTGATGCTTATAGGAAGTTGATTATAAGAAACCAGAAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGCATGTGATGCTTATAGGAAGTTGATTATAAGAAACCAGAAAAA  641

seq1  GATCTGGAAGGTGATGTAATTTCACATTCCTGAGGTATTAACTTCTAGTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGAAGGTGATGTAATTTCACATTCCTGAGGTATTAACTTCTAGTA  691

seq1  GTTCAAAGAAGCATTATTACTGCATTGGTGCATTTACAGTGTCCCTTACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGAAGCATTATTACTGCATTGGTGCATTTACAGTGTCCCTTACT  741

seq1  GGCATTTTCCTCAGCTCTGACTTCTGTTCTAATACGTGATTTCTCGTAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTCCTCAGCTCTGACTTCTGTTCTAATACGTGATTTCTCGTAGT  791

seq1  TTTTTGTTTGGGAGCTATCCTGGGGCCCCTGGTGTTCATGGTATCAAGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTGGGAGCTATCCTGGGGCCCCTGGTGTTCATGGTATCAAGGC  841

seq1  TGTGCAGGGACTCTTCAAGTGTTTTCCTTGAGCCCCATCTAAGTGACAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGGGACTCTTCAAGTGTTTTCCTTGAGCCCCATCTAAGTGACAAG  891

seq1  CAAGTACCTTCTGGATAAAACACTGAAATAAAAATGCAGTTCTTCAGCTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACCTTCTGGATAAAACACTGAAATAAAAATGCAGTTCTTCAGCTA  941

seq1  GGCTGTATCCCTATCATCTAAAATAACCACACCCCTTCAGTCTCAGAGGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTATCCCTATCATCTAAAATAACCACACCCCTTCAGTCTCAGAGGG  991

seq1  GAAGGGCACTGCTTAAAGGACAGAAAACAGAGGTGCCTATGAAACATGCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCACTGCTTAAAGGACAGAAAACAGAGGTGCCTATGAAACATGCC  1041

seq1  ATTATCTTTTGCCCAGTGAATTC  1070
      |||||||||||||||||||||||
seq2  ATTATCTTTTGCCCAGTGAATTC  1064

seq1: chr10_10868903_10870001
seq2: B6Ng01-253M03.g_64_1148

seq1  GAATTCCGTTTTATGTAACTTTCTGCCTTTTTATGAAAACCACAACTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTTTTATGTAACTTTCTGCCTTTTTATGAAAACCACAACTCAC  50

seq1  ATCAAGCCTACCGCTCTGGCAAAGAGCCCCGCCCTCTCTGGCAAGAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCCTACCGCTCTGGCAAAGAGCCCCGCCCTCTCTGGCAAGAGGTC  100

seq1  CCGCCCCTTCTTTCGGGCCCCGCCCATCCTGCATTTGCTAAAGCCACGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCTTCTTTCGGGCCCCGCCCATCCTGCATTTGCTAAAGCCACGGG  150

seq1  AGGCGGGGAAAAGAGAGAGGCACAACCACCGCGAGACTTAAACCGTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGGGAAAAGAGAGAGGCACAACCACCGCGAGACTTAAACCGTCTTC  200

seq1  TACCGGGACCTCAGGGACGGGACATGCGCAGAGGTGCTTTTTGAAGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGGGACCTCAGGGACGGGACATGCGCAGAGGTGCTTTTTGAAGCCAA  250

seq1  CACCGGAAAGAGGGGCGGAGCGTCCCGACTGGTCCTGCGCGTTCGCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGAAAGAGGGGCGGAGCGTCCCGACTGGTCCTGCGCGTTCGCCTGG  300

seq1  AGCGAGCGCTCCTGCTGGCCTCCTCAGCTGGCGCTGGCGGCTTCCGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGCGCTCCTGCTGGCCTCCTCAGCTGGCGCTGGCGGCTTCCGGCCT  350

seq1  GGGTGCCAGGCTTCACCCAGCGTGCAGCGCGCATGCGCAACTCCCGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCAGGCTTCACCCAGCGTGCAGCGCGCATGCGCAACTCCCGCAGG  400

seq1  TGAGTGTGGCGACTGTGGGCCCGGGATCTGCAGCCTGCGAGGAGGGCCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGGCGACTGTGGGCCCGGGATCTGCAGCCTGCGAGGAGGGCCGG  450

seq1  GCCCGGCGACAGGTGCCTGCAGAGCGGCTGAGGTAGGTGAGGGTGCGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGCGACAGGTGCCTGCAGAGCGGCTGAGGTAGGTGAGGGTGCGTGC  500

seq1  GGGCTCTGGGGTTAGAGTCGCGGCGGAGGGAGGCTGGCTCTGCGCGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTGGGGTTAGAGTCGCGGCGGAGGGAGGCTGGCTCTGCGCGTCAG  550

seq1  GGAAACTCCGAGGGCTCCTGCGCAGCTCCGGGATCCGGAGTGATCGGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTCCGAGGGCTCCTGCGCAGCTCCGGGATCCGGAGTGATCGGCCC  600

seq1  TGCGAGGCCCCGCGGCTCGGCCCCAGCCCGGACGTGGGCCGAGCCCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGGCCCCGCGGCTCGGCCCCAGCCCGGACGTGGGCCGAGCCCTTCT  650

seq1  CGCGTGGGACGGGTGCTTGCTGCCCACGCTTGCGTGCTGAGGCCCTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTGGGACGGGTGCTTGCTGCCCACGCTTGCGTGCTGAGGCCCTGTCA  700

seq1  CGAGCTGTCCCTCCGGCTCCTTCTTCGAGGATAACTTGCCTTGCAGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CGAGCTGTCCCTCCGGCTCCTTCTTCGAGGATAACTTGCCTTGCA-GCTG  749

seq1  GCGGTGCGTGGGACGACAGGTAGCTGGGAGGGATGCAGAGGCCGCCAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGCGTGGGACGACAGGTAGCTGGGAGGGATGCAGAGGCCGCCAAGT  799

seq1  TAGGCTGGCAAACTCTCAAGCATTACAGTCGCCTGCAGAAGCGCCCTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGGCAAACTCTCAAGCATTACAGTCGCCTGCAGAAGCGCCCTGGC  849

seq1  TCCTGTGCATTGTGTGCACTTTGACGCTGCAGGTAGCGCTAGGTTGGTGA  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCTGTGCATTGTGTGCACTTTGACGCTGCA-GTAGCGCTAGGTTGGTGA  898

seq1  ACGAAGATGTTGGTTTCTGGTTAAGGTACCCTGTGGGAGGAACGGTATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGATGTTGGTTTCTGGTTAAGGTACCCTGTGGGAGGAACGGTATTG  948

seq1  TTTACAGTCTTGCCTTTTCACCGTGGTGCCTTTTAATCCACTTGGCTTGA  1000
       ||||||||||||||||||||||| |||||||||||||||||  || |||
seq2  -TTACAGTCTTGCCTTTTCACCGT-GTGCCTTTTAATCCACT--GC-TGA  993

seq1  ATTTATCATGGCAAGTCTATGTTTTTCTCCTACGTGTTTGCCTTTGCTCC  1050
      ||||||||| ||| ||||||| |||||| ||||||| ||||| ||||  |
seq2  ATTTATCAT-GCAGGTCTATG-TTTTCT-CTACGTG-TTGCC-TTGCCTC  1038

seq1  TGTATTTGCCTAGGTCCCATG-ATCGCTAACACCACTTTATTCT-TTGTC  1098
      ||||||   |||||||||||| |||||| ||||||| ||||||| |||||
seq2  TGTATT--GCTAGGTCCCATGAATCGCT-ACACCAC-TTATTCTCTTGTC  1084

seq1  T  1099
      |
seq2  T  1085