BAC Information

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BAC

Clone NameB6Ng01-253P22
Chromosome10 (Build37)
Map Location 8,891,943 - 9,012,641
singlet/doubletdoublet
Overlap geneEG666625
Upstream geneUst, Sash1, LOC100039173
Downstream geneLOC666636, E130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253P22.bB6Ng01-253P22.g
ACCGA060577GA060578
length1,1461,160
definitionB6Ng01-253P22.b B6Ng01-253P22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,011,512 - 9,012,641)(8,891,943 - 8,893,095)
sequence
gaattctccaatcagttctgctgtaattaaattaaaatttaaagctaaaa
acccagacgttcaatggcgtgttcaataactcgtgctgggatctactcct
tcagtaatgcttatctttccaaggggcatagttaatttcttcagtgctct
gtaaattattacagaaattacaaatctactagaaaatccatacaactaat
tgtaaattaatagattcctaagtgtgaaggagcgggtaataatgtagatg
agttcttcaaagctcatggctgtcccagcatcaagggctgggggctccag
ctgcttcatgtgacatcttcaagtgtaaacacatttcttccttacccctc
cctctccctacccaccccctcacttcccactgatttagtctgccaccgca
gagaataacatttccattagccacctactgttaaatcacaaagtaacaat
gataaaaaaaatccaaacaaaccaatagaggagcaactggggttactttc
tgtctccaacgttgtgtgtggtatagtcaagcaaaaggaaaacaaaaggc
aaggttaaataaattgcatctaacagggagcgccggactatgggtttgta
tgaagcacaaacctgagtatggtaaatatgtaatcagttggttagtatgc
tgaacaattattcttcactgtttcgtctgtggagccttgaattttagtgt
gggattagatggttgtttctgtgtatatgccacatcactgccaatcaatt
tagggcaattacgggcttgtcaatagaaaatcaacaattatcataattat
gttgaggtaatcaatgaggttgccaaggccttgctgtgttctgtgcgttt
ggatgactggagaaaggaaactatgtaagtctatgttaattcagctgtgc
agcacagttgacagaaaggcaagggttatgcttttcttatatcttttttt
tttattccgttgggtttggctagggagtaggttagggcagaatggataat
catcaattctatagatagagaagaaaacttaattcagagagagattaggg
aaacccaatgtttatatttagcgtgctaactgaatgcttgcccgcaggcg
gatgtcttcatcctaggatgcctgacatacagttcacccttcagtt

gaattcatgtcctcatgatgcatagcaatcatgtcacctgctgaaccatc
tattttctgctgtagactgatgtttcttgtcaagcaggtatttatttata
aagcattttcttttaatttaaaaagtcaatgaattccaatttattatttt
ccttttatacactgcacgcttggtgttaaatacaagagctcttggcatgg
tcctagatggtgaggatttttcttttaaatttagttttacattttccatg
taagttcttgatctatttttgtgttaacattttatggtgtgcaagactta
agtctgggttcatttttgtcacatgtggacatccaactgcttcggcacca
tttctggaaacagtgtctttactctactgaatgcctttgcacctttgtca
aaagtcaattgtacatgcctgtgtgagtctctttcaggctctctattctg
atccattgatctgtgtgtctgggaccagatatctttgccttcttgcggat
cttagcaggaaagtattctgtgtctcacaatcaagtgcaaacttagctga
atgctttggtgggtgatctttatcaagttgaagatattcctctccgtttc
tatcatcttcagaaactctttttaaaaaaaatcaagacttggtcctcact
ttgcccgaaggcctttctgtatcaattgtagtttttcttctcatgtaatt
ttttttcttctttggcccaacaataaggttggctgtattgagccttttct
cctttgaataaacaactgaacttacttgtgatatataactatttttagat
tattgagatcatttgttaatattttggtctgaagttttgtgtaactatga
taaacattgatttatagggtttttaaaatttatttggtctggttttaata
tagagctaggttcataaagttctcgagaggtggtttcttcctcatatttt
tctagaaaatattttgggttgccttcatggtattctttagaagctttggg
atgcattcagccattggagtatggatataaccttggtgactgggtggtgt
ttatcccttacctacatggcttctctctccagtggttcctaagggaggag
cgattatgttcctccatgaaagtaatgtcacaggtggactctcttgtcca
attcttccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_9011512_9012641
seq2: B6Ng01-253P22.b_48_1193 (reverse)

seq1  AACTGAAAGAGTGAACTGTATGTCA-GCATCCCTAGAATG-AGACAACCC  48
      ||||| ||| ||||||||||||||| |||| ||||| ||| |||| | ||
seq2  AACTG-AAGGGTGAACTGTATGTCAGGCAT-CCTAGGATGAAGAC-ATCC  47

seq1  GCCTGC-GGCAAGCATTCCAGTTAGCA-GCTAAATATAAACA-TGGGTTT  95
      |||||| |||||||||| ||||||||| |||||||||||||| |||||||
seq2  GCCTGCGGGCAAGCATT-CAGTTAGCACGCTAAATATAAACATTGGGTTT  96

seq1  -CCTAA--TCTCTCTGAATT-AGTTT--CTCTC-ATCTATAGAAT--GTG  136
       |||||  |||||||||||| |||||   |||| |||||||||||   ||
seq2  CCCTAATCTCTCTCTGAATTAAGTTTTCTTCTCTATCTATAGAATTGATG  146

seq1  ATTATC--ATCTGCCCTAACCTACT-CCTAG-CAAAACAAACGAAAAAAA  182
      ||||||   |||||||||||||||| ||||| |||| | |||| || |||
seq2  ATTATCCATTCTGCCCTAACCTACTCCCTAGCCAAACCCAACGGAATAAA  196

seq1  AAAAAAAAAAAAAAAAAAAGCAATACCCTTGCC-TTCTGTCAACTGTGCT  231
      ||||||| | | || |||||||  ||||||||| ||||||||||||||||
seq2  AAAAAAAGATATAAGAAAAGCATAACCCTTGCCTTTCTGTCAACTGTGCT  246

seq1  GCACAGCTGAATTAACATAGACTTACATAGTTTCC-TTCTCCAGTCATCC  280
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCACAGCTGAATTAACATAGACTTACATAGTTTCCTTTCTCCAGTCATCC  296

seq1  AAACGCACAGAACACAGCAAGGCCTTGGCAACCTCATTGATTACCTCAAC  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCACAGAACACAGCAAGGCCTTGGCAACCTCATTGATTACCTCAAC  346

seq1  ATAATTATGATAATTGTTGATTTTCTATTGACAAGCCCGTAATTGCCCTA  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATGATAATTGTTGATTTTCTATTGACAAGCCCGTAATTGCCCTA  396

seq1  AATTGATTGGCAGTGATGTGGCATATACACAGAAACAACCATCTAATCCC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTGGCAGTGATGTGGCATATACACAGAAACAACCATCTAATCCC  446

seq1  ACACTAAAATTCAAGGCTCCACAGACGAAACAGTGAAGAATAATTGTTCA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAAATTCAAGGCTCCACAGACGAAACAGTGAAGAATAATTGTTCA  496

seq1  GCATACTAACCAACTGATTACATATTTACCATACTCAGGTTTGTGCTTCA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTAACCAACTGATTACATATTTACCATACTCAGGTTTGTGCTTCA  546

seq1  TACAAACCCATAGTCCGGCGCTCCCTGTTAGATGCAATTTATTTAACCTT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACCCATAGTCCGGCGCTCCCTGTTAGATGCAATTTATTTAACCTT  596

seq1  GCCTTTTGTTTTCCTTTTGCTTGACTATACCACACACAACGTTGGAGACA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTGTTTTCCTTTTGCTTGACTATACCACACACAACGTTGGAGACA  646

seq1  GAAAGTAACCCCAGTTGCTCCTCTATTGGTTTGTTTGGATTTTTTTTATC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAACCCCAGTTGCTCCTCTATTGGTTTGTTTGGATTTTTTTTATC  696

seq1  ATTGTTACTTTGTGATTTAACAGTAGGTGGCTAATGGAAATGTTATTCTC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTACTTTGTGATTTAACAGTAGGTGGCTAATGGAAATGTTATTCTC  746

seq1  TGCGGTGGCAGACTAAATCAGTGGGAAGTGAGGGGGTGGGTAGGGAGAGG  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGTGGCAGACTAAATCAGTGGGAAGTGAGGGGGTGGGTAGGGAGAGG  796

seq1  GAGGGGTAAGGAAGAAATGTGTTTACACTTGAAGATGTCACATGAAGCAG  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTAAGGAAGAAATGTGTTTACACTTGAAGATGTCACATGAAGCAG  846

seq1  CTGGAGCCCCCAGCCCTTGATGCTGGGACAGCCATGAGCTTTGAAGAACT  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCCCCAGCCCTTGATGCTGGGACAGCCATGAGCTTTGAAGAACT  896

seq1  CATCTACATTATTACCCGCTCCTTCACACTTAGGAATCTATTAATTTACA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACATTATTACCCGCTCCTTCACACTTAGGAATCTATTAATTTACA  946

seq1  ATTAGTTGTATGGATTTTCTAGTAGATTTGTAATTTCTGTAATAATTTAC  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTGTATGGATTTTCTAGTAGATTTGTAATTTCTGTAATAATTTAC  996

seq1  AGAGCACTGAAGAAATTAACTATGCCCCTTGGAAAGATAAGCATTACTGA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTGAAGAAATTAACTATGCCCCTTGGAAAGATAAGCATTACTGA  1046

seq1  AGGAGTAGATCCCAGCACGAGTTATTGAACACGCCATTGAACGTCTGGGT  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAGATCCCAGCACGAGTTATTGAACACGCCATTGAACGTCTGGGT  1096

seq1  TTTTAGCTTTAAATTTTAATTTAATTACAGCAGAACTGATTGGAGAATTC  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTTTAAATTTTAATTTAATTACAGCAGAACTGATTGGAGAATTC  1146


seq1: chr10_8891943_8893095
seq2: B6Ng01-253P22.g_64_1223

seq1  GAATTCATGTCCTCATGATGCATAGCAATCATGTCACCTGCTGAACCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTCCTCATGATGCATAGCAATCATGTCACCTGCTGAACCATC  50

seq1  TATTTTCTGCTGTAGACTGATGTTTCTTGTCAAGCAGGTATTTATTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGCTGTAGACTGATGTTTCTTGTCAAGCAGGTATTTATTTATA  100

seq1  AAGCATTTTCTTTTAATTTAAAAAGTCAATGAATTCCAATTTATTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTTCTTTTAATTTAAAAAGTCAATGAATTCCAATTTATTATTTT  150

seq1  CCTTTTATACACTGCACGCTTGGTGTTAAATACAAGAGCTCTTGGCATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATACACTGCACGCTTGGTGTTAAATACAAGAGCTCTTGGCATGG  200

seq1  TCCTAGATGGTGAGGATTTTTCTTTTAAATTTAGTTTTACATTTTCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGATGGTGAGGATTTTTCTTTTAAATTTAGTTTTACATTTTCCATG  250

seq1  TAAGTTCTTGATCTATTTTTGTGTTAACATTTTATGGTGTGCAAGACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCTTGATCTATTTTTGTGTTAACATTTTATGGTGTGCAAGACTTA  300

seq1  AGTCTGGGTTCATTTTTGTCACATGTGGACATCCAACTGCTTCGGCACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGTTCATTTTTGTCACATGTGGACATCCAACTGCTTCGGCACCA  350

seq1  TTTCTGGAAACAGTGTCTTTACTCTACTGAATGCCTTTGCACCTTTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAAACAGTGTCTTTACTCTACTGAATGCCTTTGCACCTTTGTCA  400

seq1  AAAGTCAATTGTACATGCCTGTGTGAGTCTCTTTCAGGCTCTCTATTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAATTGTACATGCCTGTGTGAGTCTCTTTCAGGCTCTCTATTCTG  450

seq1  ATCCATTGATCTGTGTGTCTGGGACCAGATATCTTTGCCTTCTTGCGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTGATCTGTGTGTCTGGGACCAGATATCTTTGCCTTCTTGCGGAT  500

seq1  CTTAGCAGGAAAGTATTCTGTGTCTCACAATCAAGTGCAAACTTAGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAGGAAAGTATTCTGTGTCTCACAATCAAGTGCAAACTTAGCTGA  550

seq1  ATGCTTTGGTGGGTGATCTTTATCAAGTTGAAGATATTCCTCTCCGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTGGTGGGTGATCTTTATCAAGTTGAAGATATTCCTCTCCGTTTC  600

seq1  TATCATCTTCAGAAACTCTTTTTAAAAAAAATCAAGACTTGGTCCTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTTCAGAAACTCTTTTTAAAAAAAATCAAGACTTGGTCCTCACT  650

seq1  TTGCCCGAAGGCCTTTCTGTATCAATTGTAGTTTTTCTTCTCATGTAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCGAAGGCCTTTCTGTATCAATTGTAGTTTTTCTTCTCATGTAATT  700

seq1  TTTTTTCTTCTTTGGCCCAACAATAAGGTTGGCTGTATTGAGCCTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTCTTTGGCCCAACAATAAGGTTGGCTGTATTGAGCCTTTTCT  750

seq1  CCTTTGAATAAACAACTGAACTTACTTGTGATATATAACTATTTTTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAATAAACAACTGAACTTACTTGTGATATATAACTATTTTTAGAT  800

seq1  TATTGAGATCATTTGTTAATATTTTGGTCTGAAGTTTTGTGTAACTATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGATCATTTGTTAATATTTTGGTCTGAAGTTTTGTGTAACTATGA  850

seq1  TAAACATTGATTTATAGGGTTTTTAAAATTTATTT-GTCTGGTTTTAATA  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAAACATTGATTTATAGGGTTTTTAAAATTTATTTGGTCTGGTTTTAATA  900

seq1  TAGAGCTAGGTTCATAAAAGTTCTCGAGAGGT-GTTTCTTCCTCATA-TT  947
      ||||||||||||||| |||||||||||||||| |||||||||||||| ||
seq2  TAGAGCTAGGTTCAT-AAAGTTCTCGAGAGGTGGTTTCTTCCTCATATTT  949

seq1  TTCTAGAAAAATATTTTGGGTTGCCTTCATGTTAATTCTTTAGAAGCTTT  997
      |||||| |||||||||||||||||||||||| | ||||||||||||||||
seq2  TTCTAG-AAAATATTTTGGGTTGCCTTCATGGT-ATTCTTTAGAAGCTTT  997

seq1  -GGATGCATTCAGCCATT-GAGTATTGATATAACCTTGGTGACT-GGTGG  1044
       ||||||||||||||||| |||||| |||||||||||||||||| |||||
seq2  GGGATGCATTCAGCCATTGGAGTATGGATATAACCTTGGTGACTGGGTGG  1047

seq1  TGTTTATCCCTTTACCTACATTGGCTCTCTCTCCAGTTGTT-CTAA-GGA  1092
      |||||||||| |||||||||| |  |||||||||||| ||| |||| |||
seq2  TGTTTATCCC-TTACCTACATGGCTTCTCTCTCCAGTGGTTCCTAAGGGA  1096

seq1  GGAGCGATTATGT--CTCCATG--AGTAATGTCAACTTGTTGACATCTCT  1138
      |||||||||||||  |||||||  ||||||||| ||  || ||| |||||
seq2  GGAGCGATTATGTTCCTCCATGAAAGTAATGTC-ACAGGTGGAC-TCTCT  1144

seq1  TGTCC-ATTCTCCCAG  1153
      ||||| ||||| ||||
seq2  TGTCCAATTCTTCCAG  1160


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