BAC Information

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BAC

Clone NameB6Ng01-254P06
Chromosome10 (Build37)
Map Location 117,016,397 - 117,172,550
singlet/doubletdoublet
Overlap geneLOC668149, Kifc5c, Cpm, Mdm2, Slc35e3
Upstream geneCnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146
Downstream geneNup107, Rap1b, Mdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng, LOC100043478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254P06.bB6Ng01-254P06.g
ACCGA061282GA061283
length695929
definitionB6Ng01-254P06.b B6Ng01-254P06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,016,397 - 117,017,088)(117,171,642 - 117,172,550)
sequence
gaattccacaggaagaccaacagagtctggacctttgtgagctctcagag
tctgaaccaccaaccaaagagcatatatgggctggacctaggccccccca
aacatatgtagcagatgtgcagctttgtcttcgtgtgggtcccgaacaac
tggaatgggagctatccctaaagctattgcctgtctgtaaaatctgttcc
cctagcagctgtcttgtgtggcctcagagggagacgcacctagccctaca
gagaattgatgtatttgggcggaggagaggctgggggtgggggcgcctcc
agtccctcagaggagaagggaaaggagatgggagaagggtctgtgggagg
gggaccaggagcgaggacagcaatcaggatgtaaagtaaacaggtttttt
ttaaaaagggaaaaaagaatatagcaatgagaaacacacattggttgctg
ctctccgcagttcaggctctactggggacaggctatacacagataagcat
gatgtcatagctgagatggaggtcttaggtatccccttgaagatgttctc
atgaaaaatttgcatagagcaagacaaacaggatgggaaggtgagaaggc
aagccagagtgtcttccaggtaaatctagccatggcctggtccacaaggc
tcttggagcaaacacttgctccaccaggtttgcgctggaatgcga
gaattctctacatagcccaaactggctttggactctaccactccatgtag
cctttagctttctgatttcactgcagaactgaaacgtttatagaaaggaa
gctgtcatcgacatgctcatgaaaccaattacatctctgaaagtatcacc
ttttcagtagaaacttaatctaagacattcttccctgttagacagggcag
gagtgcttgagcccaaagcccgctcagcagcacagctctgcccgtgctag
agggagcgtctgcagactgacagtctcattggtcttctcgcggctttggg
ctttgagtgagttctagatactatatatggagttacaggaaaacccatct
ttaaacggctcaaagcaaagctgtagagggccagcaggtagagccagtaa
ccgggtccctgcccagcactcataggtgggttcgcagtcgtcctggtaac
tgcttccccagcttgcttaatcctttcatcccagtgttttctgatgtggc
ctccctcctgtactccctgcctcccacatcctgagcagtagataaggagc
gttgtatgtattggaaaaactggactgaaccaggccttgcagtttatgtg
gcaaatcagagcaaaggcttgcccaagttctaggcagaaacttggtgaaa
aacaggaaagatatgaaagacaggtagataactagctaatattttagcta
cttgtatgaggtttccagaggaattgaaaatgtttttagtttgagatgta
gacagaatacatggggctccagcaaatagagccctgggtattaactgcaa
tgtgtgtgttcggcctcatgtatcttgtcgtttttgcctttcacaacagc
cgcctgatgaccgcataagagtctggtctcttggattaattactttttcc
tagtatacactttctcgtgataaagcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_117016397_117017088
seq2: B6Ng01-254P06.b_45_739

seq1  GAATTCCACAGGAAGACCAACAGAGTCTGGACCTTTG-GAGCTCTCAGAG  49
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAATTCCACAGGAAGACCAACAGAGTCTGGACCTTTGTGAGCTCTCAGAG  50

seq1  TCTGAACCACCAACCAAAGAGCATATATGGGCTGGACCTAGGCCCCCCCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACCACCAACCAAAGAGCATATATGGGCTGGACCTAGGCCCCCCCA  100

seq1  AACATATGTAGCAGATGTGCAGCTTTGTCTTCGTGTGGGTCCCGAACAAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGTAGCAGATGTGCAGCTTTGTCTTCGTGTGGGTCCCGAACAAC  150

seq1  TGGAATGGGAGCTATCCCTAAAGCTATTGCCTGTCTGTAAAATCTGTTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGGGAGCTATCCCTAAAGCTATTGCCTGTCTGTAAAATCTGTTCC  200

seq1  CCTAGCAGCTGTCTTGTGTGGCCTCAGAGGGAGACGCACCTAGCCCTACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCAGCTGTCTTGTGTGGCCTCAGAGGGAGACGCACCTAGCCCTACA  250

seq1  GAGAATTGATGTATTTGGGCGGAGGAGAGGCTGGGGGTGGGGGCGCCTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTGATGTATTTGGGCGGAGGAGAGGCTGGGGGTGGGGGCGCCTCC  300

seq1  AGTCCCTCAGAGGAGAAGGGAAAGGAGATGGGAGAAGGGTCTGTGGGAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTCAGAGGAGAAGGGAAAGGAGATGGGAGAAGGGTCTGTGGGAGG  350

seq1  GGGACCAGGAGCGAGGACAGCAATCAGGATGTAAAGTAAACAGGTTTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCAGGAGCGAGGACAGCAATCAGGATGTAAAGTAAACAGGTTTTTT  400

seq1  TTAAAAAGGGAAAAAAGAATATAGCAATGAGAAACACACATTGGTTGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGGGAAAAAAGAATATAGCAATGAGAAACACACATTGGTTGCTG  450

seq1  CTCTCCGCAGTTCAGGCTCTACTGGGGACAGGCTATACACAGATAAGCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCGCAGTTCAGGCTCTACTGGGGACAGGCTATACACAGATAAGCAT  500

seq1  GATGTCATAGCTGAGATGGAGGTCTTAGGTATCCCCTTGAAGATGTTCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCATAGCTGAGATGGAGGTCTTAGGTATCCCCTTGAAGATGTTCTC  550

seq1  AGGAAAAATTTGCACAGAGCAAGACAAACAGGATGGGAAGGTGAGAAGGC  599
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATGAAAAATTTGCATAGAGCAAGACAAACAGGATGGGAAGGTGAGAAGGC  600

seq1  AAGCCAGAGTGTCCTCCAGGTAAATCTAGCCATGGCCTGGTCCACAAGGC  649
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAGTGTCTTCCAGGTAAATCTAGCCATGGCCTGGTCCACAAGGC  650

seq1  TC-TGGAGCAGACAC-TGCTCCACCAGGTTTGTGCTGGAAGGCGA  692
      || ||||||| |||| |||||||||||||||| ||||||| ||||
seq2  TCTTGGAGCAAACACTTGCTCCACCAGGTTTGCGCTGGAATGCGA  695

seq1: chr10_117171642_117172550
seq2: B6Ng01-254P06.g_71_982 (reverse)

seq1  AAGTGTATGCTTAGAAAAAGTTATTATTCCAAGAGACCCGACTCTTCTGC  50
      |||||||| ||  |||||||| |||| ||||||||||| ||||||| |||
seq2  AAGTGTATACTAGGAAAAAGTAATTAATCCAAGAGACCAGACTCTTATGC  50

seq1  GGTCATCA-GCGGCTGCTGTGAATGGC-AAAACGACAAGATACCTGAAGG  98
      |||||||| ||||||| |||||| ||| ||||||||||||||| ||| | 
seq2  GGTCATCAGGCGGCTGTTGTGAAAGGCAAAAACGACAAGATACATGAGGC  100

seq1  CAGACACACACTTTTGCAGTTAAATACCCAGGGCTCTATTTGCTGGAGCC  148
      |  ||||||||  |||||||| ||||||||||||||||||||||||||||
seq2  CGAACACACAC-ATTGCAGTT-AATACCCAGGGCTCTATTTGCTGGAGCC  148

seq1  CCATGTATTCTGTCTACATCTC-AACTAAAAACATTTCTCAATTCCTCTG  197
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  CCATGTATTCTGTCTACATCTCAAACTAAAAACATTT-TCAATTCCTCTG  197

seq1  G-AACCTCATACAAGTAGCT-AAATATTAGCTAGTTTTCTACCTGTCTTT  245
      | |||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  GAAACCTCATACAAGTAGCTAAAATATTAGCTAGTTATCTACCTGTCTTT  247

seq1  CATATCTTTCCTGTTTTTCACCAAGTTTCTGCCTAGAACTTGGGC-AGCC  294
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CATATCTTTCCTGTTTTTCACCAAGTTTCTGCCTAGAACTTGGGCAAGCC  297

seq1  TTTGCTCTGATTTGCCACATAAACTGCAAGGCCTGGTTCAGTCCAGTTTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTGATTTGCCACATAAACTGCAAGGCCTGGTTCAGTCCAGTTTT  347

seq1  TCCAATACATACAACGCTCCTTATCTACTGCTCAGGATGTGGGAGGCAGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATACATACAACGCTCCTTATCTACTGCTCAGGATGTGGGAGGCAGG  397

seq1  GAGTACAGGAGGGAGGCCACATCAGAAAACACTGGGATGAAAGGATTAAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACAGGAGGGAGGCCACATCAGAAAACACTGGGATGAAAGGATTAAG  447

seq1  CAAGCTGGGGAAGCAGTTACCAGGACGACTGCGAACCCACCTATGAGTGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGGGGAAGCAGTTACCAGGACGACTGCGAACCCACCTATGAGTGC  497

seq1  TGGGCAGGGACCCGGTTACTGGCTCTACCTGCTGGCCCTCTACAGCTTTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGGACCCGGTTACTGGCTCTACCTGCTGGCCCTCTACAGCTTTG  547

seq1  CTTTGAGCCGTTTAAAGATGGGTTTTCCTGTAACTCCATATATAGTATCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGCCGTTTAAAGATGGGTTTTCCTGTAACTCCATATATAGTATCT  597

seq1  AGAACTCACTCAAAGCCCAAAGCCGCGAGAAGACCAATGAGACTGTCAGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCACTCAAAGCCCAAAGCCGCGAGAAGACCAATGAGACTGTCAGT  647

seq1  CTGCAGACGCTCCCTCTAGCACGGGCAGAGCTGTGCTGCTGAGCGGGCTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGACGCTCCCTCTAGCACGGGCAGAGCTGTGCTGCTGAGCGGGCTT  697

seq1  TGGGCTCAAGCACTCCTGCCCTGTCTAACAGGGAAGAATGTCTTAGATTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCAAGCACTCCTGCCCTGTCTAACAGGGAAGAATGTCTTAGATTA  747

seq1  AGTTTCTACTGAAAAGGTGATACTTTCAGAGATGTAATTGGTTTCATGAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTACTGAAAAGGTGATACTTTCAGAGATGTAATTGGTTTCATGAG  797

seq1  CATGTCGATGACAGCTTCCTTTCTATAAACGTTTCAGTTCTGCAGTGAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCGATGACAGCTTCCTTTCTATAAACGTTTCAGTTCTGCAGTGAAA  847

seq1  TCAGAAAGCTAAAGGCTACATGGAGTGGTAGAGTCCAAAGCCAGTTTGGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGCTAAAGGCTACATGGAGTGGTAGAGTCCAAAGCCAGTTTGGG  897

seq1  CTATGTAGAGAATTC  909
      |||||||||||||||
seq2  CTATGTAGAGAATTC  912