BAC Information

Click to search

BAC

Clone NameB6Ng01-255B17
Chromosome10 (Build37)
Map Location 8,817,709 - 8,976,698
singlet/doubletdoublet
Overlap geneEG666625
Upstream geneUst, Sash1, LOC100039173
Downstream geneLOC666636, E130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255B17.bB6Ng01-255B17.g
ACCGA061397GA061398
length1,1021,138
definitionB6Ng01-255B17.b B6Ng01-255B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,817,709 - 8,818,817)(8,975,576 - 8,976,698)
sequence
gaattctgtaatcttttccttctaggtcgctccagggtggattgtctcta
aatttaagataatcactgaaaaataattcttatgctaaaaattttggaaa
ctttaaaaataatctgtggtgatagtaataaataaatcattcctgcagaa
ttgatgatactaactttccgagtgacccattcattaagtcctcgggcggg
actcaagctattgtaattcagtacccagtcacttaccatgaaatacttgc
ttcttgcagccccagatccatttgaaaattgatagcaccatcaggtctac
aaggtcttgagaagaatttcattttctcactggtctaaagtgattgtgcc
gtgttccctgaccttcaagagctttttgtcattttttctgtcatgtggcg
tggtggttctttccctccatccatttcatttaaatatgtgctgtgtgagt
aaatccaataaactaagtagccatttagttaagaccctcgaggggtcaga
gctccagggaacatttcatggcactgatggtccgtcctccactctcattt
cctacaccattgatcatcttccacccgctctcaccacgtgctgtttagga
tcctatggtgggagggatgccaggccgaatagccaactgctttccccacc
tacagtgagcgaatagagcgacgttctgcccacacttaataatctaaaac
tgtcccaagcatagatgagccctgggcactgccagacaagggtcctcaga
ggtgagtggggacactcttctttactgaattccttccccagcacgcccat
ttgttcataaaggactctcaccttcctttttcaatgataaatcacctgac
cgaaaggtgccgtggggatgttacaccatttttcttcctatcagctcatc
tctgacagcagaaggcattgagggaaaggccaagggaaacccaaggcctg
gtgaatggcagttgtatattatgggatacaaatgaagggacaaagaggaa
ggtacatttttaaacgtgtcactcaaaaggtagcatggtgttcacacacc
acaactttcttgctatcaaggacaggtttaattgaaatagatctagggtg
aa

gaattcagtgttgacttttgtaactttgtgaaaagctgagtaaactcaga
tagcagctgagagatattgtagagattgccatggttccagggacttattt
tactaatgacacataatttcccttgctcaaaataaacaaagagtacatta
gaggttaacttgtagctcttaatttgagttgcaatttacctaaaggtact
caattgagcaacctatggcattgattttcactatttacaccctaacttga
aaaagaataaaactctactctttaaagagttaagccatctctaaatattt
tattacctactagcaatatttcaaagcatctgtatgcttcattttgttgc
cttgataaacttaaggctaacacttctgtttaatataaaaattaaggttc
cgggatggcctgggattgttatctatggaagaacacattgcttggcagat
tttaaattgctggagggtacaaagaaatattaaaaaataatcgcatagat
tgtaagaaagataatatttcatttttttgcaaaatgtaaaattaatttga
gcagctaagtctattagcatcaaggagtgaatctgtttgagtgaaaaatt
atcttcacatataggcttttttatgaaaaatattaatggaaatttttctt
ctatattggctcatccaccttatttgatatgtttccttggaaagcaaaag
aatttctttattatatcccgctaaggagatattaaaaagccatgtataat
atttttgctttctaaccagtgacacgggcatttatatatctgtccctgag
aacttgattctaggtaaatctttacaaacagagggctcctcgacacacat
actcctcagttaaaccattagtacacaagagacacagaaagttctttact
tctacagttaaactaatttgatgttgaagacctaatacatcaactgctaa
catccatactttctgtgcctggccaatgttgtggaccacaactcttgggt
ttgcacctttcttttgaaggcagttcttttggaaagcctgtgatatgggg
actcaacctgtattttgatcctgaaattgaacagtgatgacagagtgatg
tttgagaatgtcacattgaaactcattttattgtatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_8817709_8818817
seq2: B6Ng01-255B17.b_47_1148

seq1  GAATTCTGTAATCTTTTCCTTCTAGGTCGCTCCAGGGTGGATTGTCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAATCTTTTCCTTCTAGGTCGCTCCAGGGTGGATTGTCTCTA  50

seq1  AATTTAAGATAATCACTGAAAAATAATTCTTATGCTAAAAATTTTGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGATAATCACTGAAAAATAATTCTTATGCTAAAAATTTTGGAAA  100

seq1  CTTTAAAAATAATCTGTGGTGATAGTAATAAATAAATCATTCCTGCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAATAATCTGTGGTGATAGTAATAAATAAATCATTCCTGCAGAA  150

seq1  TTGATGATACTAACTTTCCGAGTGACCCATTCATTAAGTCCTCGGGCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGATACTAACTTTCCGAGTGACCCATTCATTAAGTCCTCGGGCGGG  200

seq1  ACTCAAGCTATTGTAATTCAGTACCCAGTCACTTACCATGAAATACTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGCTATTGTAATTCAGTACCCAGTCACTTACCATGAAATACTTGC  250

seq1  TTCTTGCAGCCCCAGATCCATTTGAAAATTGATAGCACCATCAGGTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCAGCCCCAGATCCATTTGAAAATTGATAGCACCATCAGGTCTAC  300

seq1  AAGGTCTTGAGAAGAATTTCATTTTCTCACTGGTCTAAAGTGATTGTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTTGAGAAGAATTTCATTTTCTCACTGGTCTAAAGTGATTGTGCC  350

seq1  GTGTTCCCTGACCTTCAAGAGCTTTTTGTCATTTTTTCTGTCATGTGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCCTGACCTTCAAGAGCTTTTTGTCATTTTTTCTGTCATGTGGCG  400

seq1  TGGTGGTTCTTTCCCTCCATCCATTTCATTTAAATATGTGCTGTGTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTTCTTTCCCTCCATCCATTTCATTTAAATATGTGCTGTGTGAGT  450

seq1  AAATCCAATAAACTAAGTAGCCATTTAGTTAAGACCCTCGAGGGGTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAATAAACTAAGTAGCCATTTAGTTAAGACCCTCGAGGGGTCAGA  500

seq1  GCTCCAGGGAACATTTCATGGCACTGATGGTCCGTCCTCCACTCTCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGGGAACATTTCATGGCACTGATGGTCCGTCCTCCACTCTCATTT  550

seq1  CCTACACCATTGATCATCTTCCACCCGCTCTCACCACGTGCTGTTTAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACCATTGATCATCTTCCACCCGCTCTCACCACGTGCTGTTTAGGA  600

seq1  TCCTATGGTGGGAGGGATGCCAGGCCGAATAGCCAACTGCTTTCCCCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGGTGGGAGGGATGCCAGGCCGAATAGCCAACTGCTTTCCCCACC  650

seq1  TACAGTGAGCGAATAGAGCGACGTTCTGCCCACACTTAATAATCTAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGAGCGAATAGAGCGACGTTCTGCCCACACTTAATAATCTAAAAC  700

seq1  TGTCCCAAGCATAGATGAGCCCTGGGCACTGCCAGACAAGGGTCCTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAAGCATAGATGAGCCCTGGGCACTGCCAGACAAGGGTCCTCAGA  750

seq1  GGTGAGTGGGGACACTCTTCTTTACTGAATTCCTTCCCCAGCACGCCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTGGGGACACTCTTCTTTACTGAATTCCTTCCCCAGCACGCCCAT  800

seq1  TTGTTCATAAAGGACTCTCACCTTCCTTTTTCAATGATAAATCACCTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATAAAGGACTCTCACCTTCCTTTTTCAATGATAAATCACCTGAC  850

seq1  CGAAAGGTGCCGTGGGGATGTTACACCATTTTTCTTCCTATCAGCTCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGGTGCCGTGGGGATGTTACACCATTTTTCTTCCTATCAGCTCATC  900

seq1  TCTGACAGCAGAAGGCATTGAGGG-AAGGCCAAGGGAAACCCAAGGCCTG  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTGACAGCAGAAGGCATTGAGGGAAAGGCCAAGGGAAACCCAAGGCCTG  950

seq1  GTGAATGGCAGTTGTATATTATGGGATACAAATGAAGGGACAAAGAGGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGGCAGTTGTATATTATGGGATACAAATGAAGGGACAAAGAGGAA  1000

seq1  GGTACAATTTTTTAAACGTGTCAACTCAAAAGGTAGCATGGTGTTTTCAC  1049
      ||||||  |||||||||||||| ||||||||||||||||||||||  |||
seq2  GGTACA--TTTTTAAACGTGTC-ACTCAAAAGGTAGCATGGTGTTCACAC  1047

seq1  ACACACAACTTTC-TGCTATCAAAGGACAGTTTTAATTTGAAAATAGAAT  1098
      || |||||||||| ||||||| |||||||| |||||||   |||||||  
seq2  AC-CACAACTTTCTTGCTATC-AAGGACAGGTTTAATT--GAAATAGA--  1091

seq1  TCTAGGGTGAA  1109
      |||||||||||
seq2  TCTAGGGTGAA  1102


seq1: chr10_8975576_8976698
seq2: B6Ng01-255B17.g_67_1204 (reverse)

seq1  CTATACAATAAAATGAGTTTCATTGTGACATCTTCAAACATCACTCTGTC  50
      |||||||||||||||||||||| ||||||||  |||||||||||||||||
seq2  CTATACAATAAAATGAGTTTCAATGTGACATTCTCAAACATCACTCTGTC  50

seq1  ATCACTGTTC-ATTTCA-GATC-AAATACA-GTTGAGTCCCCATATCACA  96
      |||||||||| |||||| |||| ||||||| |||||||||||||||||||
seq2  ATCACTGTTCAATTTCAGGATCAAAATACAGGTTGAGTCCCCATATCACA  100

seq1  G--CTTCCAAAAGAACTGCC-TCAAA--GAAGGTGCAAA-CCAAGAG-TG  139
      |   |||||||||||||||| |||||   |||||||||| ||||||| ||
seq2  GGCTTTCCAAAAGAACTGCCTTCAAAAGAAAGGTGCAAACCCAAGAGTTG  150

seq1  T-GTCCACAACATTGGCCAGGGCACAG-AAGTATGGATGTTAGCAGTTGA  187
      | ||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  TGGTCCACAACATTGGCCA-GGCACAGAAAGTATGGATGTTAGCAGTTGA  199

seq1  TGTATTAGGTC-TCAACATCAAATTAGTTTAACTGTAGAAGTAAAGAAC-  235
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  TGTATTAGGTCTTCAACATCAAATTAGTTTAACTGTAGAAGTAAAGAACT  249

seq1  TTCTGTGTCTCTTGTGTACTAATGGTTTAACTGAGGAGTATGTGTGTCGA  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTCTCTTGTGTACTAATGGTTTAACTGAGGAGTATGTGTGTCGA  299

seq1  GGAGCCCTCTGTTTGTAAAGATTTACCTAGAATCAAGTTCTCAGGGACAG  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCTCTGTTTGTAAAGATTTACCTAGAATCAAGTTCTCAGGGACAG  349

seq1  ATATATAAATG-CCGTGTCACTGGTTAGAAAGCAAAAATATTATACATGG  384
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAATGCCCGTGTCACTGGTTAGAAAGCAAAAATATTATACATGG  399

seq1  CTTTTTAATATCTCCTTAGCGGGATATAATAAAGAAATTCTTTTGCTTTC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAATATCTCCTTAGCGGGATATAATAAAGAAATTCTTTTGCTTTC  449

seq1  CAAGGAAACATATCAAATAAGGTGGATGAGCCAATATAGAAGAAAAATTT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAACATATCAAATAAGGTGGATGAGCCAATATAGAAGAAAAATTT  499

seq1  CCATTAATATTTTTCATAAAAAAGCCTATATGTGAAGATAATTTTTCACT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAATATTTTTCATAAAAAAGCCTATATGTGAAGATAATTTTTCACT  549

seq1  CAAACAGATTCACTCCTTGATGCTAATAGACTTAGCTGCTCAAATTAATT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGATTCACTCCTTGATGCTAATAGACTTAGCTGCTCAAATTAATT  599

seq1  TTACATTTTGCAAAAAAATGAAATATTATCTTTCTTACAATCTATGCGAT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTTGCAAAAAAATGAAATATTATCTTTCTTACAATCTATGCGAT  649

seq1  TATTTTTTAATATTTCTTTGTACCCTCCAGCAATTTAAAATCTGCCAAGC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTAATATTTCTTTGTACCCTCCAGCAATTTAAAATCTGCCAAGC  699

seq1  AATGTGTTCTTCCATAGATAACAATCCCAGGCCATCCCGGAACCTTAATT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTCTTCCATAGATAACAATCCCAGGCCATCCCGGAACCTTAATT  749

seq1  TTTATATTAAACAGAAGTGTTAGCCTTAAGTTTATCAAGGCAACAAAATG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTAAACAGAAGTGTTAGCCTTAAGTTTATCAAGGCAACAAAATG  799

seq1  AAGCATACAGATGCTTTGAAATATTGCTAGTAGGTAATAAAATATTTAGA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATACAGATGCTTTGAAATATTGCTAGTAGGTAATAAAATATTTAGA  849

seq1  GATGGCTTAACTCTTTAAAGAGTAGAGTTTTATTCTTTTTCAAGTTAGGG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTAACTCTTTAAAGAGTAGAGTTTTATTCTTTTTCAAGTTAGGG  899

seq1  TGTAAATAGTGAAAATCAATGCCATAGGTTGCTCAATTGAGTACCTTTAG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATAGTGAAAATCAATGCCATAGGTTGCTCAATTGAGTACCTTTAG  949

seq1  GTAAATTGCAACTCAAATTAAGAGCTACAAGTTAACCTCTAATGTACTCT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTGCAACTCAAATTAAGAGCTACAAGTTAACCTCTAATGTACTCT  999

seq1  TTGTTTATTTTGAGCAAGGGAAATTATGTGTCATTAGTAAAATAAGTCCC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATTTTGAGCAAGGGAAATTATGTGTCATTAGTAAAATAAGTCCC  1049

seq1  TGGAACCATGGCAATCTCTACAATATCTCTCAGCTGCTATCTGAGTTTAC  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCATGGCAATCTCTACAATATCTCTCAGCTGCTATCTGAGTTTAC  1099

seq1  TCAGCTTTTCACAAAGTTACAAAAGTCAACACTGAATTC  1123
      |||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTTCACAAAGTTACAAAAGTCAACACTGAATTC  1138


| Home | SequenceCutter | Blast | Download |