BAC Information

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BAC

Clone NameB6Ng01-256I11
Chromosome10 (Build37)
Map Location 126,887,066 - 127,037,237
singlet/doubletdoublet
Overlap geneR3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc
Downstream geneLOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256I11.bB6Ng01-256I11.g
ACCGA062463GA062464
length2821,079
definitionB6Ng01-256I11.b B6Ng01-256I11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,887,066 - 126,887,336)(127,036,156 - 127,037,237)
sequence
tcttgttttaagaagggaagcattgctcaggtggcagaggcagggggatc
tttgagttggaggctagtgagttctaggacagccatagagaaactattaa
aaaaaaatagccaaaaccagggcagtggagggaagaagcatttggagaga
agactccccattttattccttccttcttccttccttccttccttccttct
tccttccttccttacttccttccttcttccttccttccttacttccttcc
ttccttccttcctcctttctaccttcctcctt
gaattctggctgggtgtataagcaggggcaggaagggtagtcagggaaga
agttatgataacttctggacttgctggtagaatgagcaagagctgaagtc
aggatttggtagcaaacaggaacacgaggccgtgttatttagtcaaacct
gccaggctcgcctcactagccagatccctcagtgggactgcaaactgtcc
tctgccaatgtcctcggcattccaaggccagggaagagaagggggaagga
tgccctggctccaggacaacagagggaggattcggtattcagtaaatatt
tgttaagccaatcaatacgtgtgcgtagtgtgcgtctggcaccggggagg
aaatgtaaagataatgcctgacctgcggcatctgcagtcaggtggaattc
ataacgccaggagctcctggggtcactggagcctgtaacacggagaggcc
cctttcagtcggtcaagttccagcacagagagctcctttgtgcaggcaaa
gctcctttccatagggggaagttcctccatgtagggggaactccttccat
tgagggaagctccgttctgtggggagagtctctcaacagagtcagtgtga
aataagaacaccagtttcagtgcccacgcccaccccgttggccaccgtaa
ctcgggaggtcacaggtcgaaagggaaggtaggaaagactggggttcggg
aagaggtgacacgtatggagtggtcatgggctacatgccccaaatgtacc
atcccatttactgatggtttaccagtgctcagaacccagctggacccagg
gcagagcacagcattgggaagtagcatggaagaaataaggaccagaaccc
aagtgtgttccctggggatgtagctaatgtagaaatggagttctttcgtc
ttcaaaggaacgtggtgcgtgttctacaatctttgggtgtgttgatgtat
cctagagacctgccggtcgtcatggcgcacgcctttattcccagtgctgg
gcagatttctgagtctaggtcagcctggtctacacagcgagtcaagacag
ccatgctaccagagaaccctggtctcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_126887066_126887336
seq2: B6Ng01-256I11.b_51_332

seq1  TCTTGTTTTAAGAAGGGAAGCATTGCTCAGGTGGCAGAGGCAGGGGGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTTAAGAAGGGAAGCATTGCTCAGGTGGCAGAGGCAGGGGGATC  50

seq1  TTTGAGTTGGAGGCTAGTGAGTTCTAGGACAGCCATAGAGAAACTATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTGGAGGCTAGTGAGTTCTAGGACAGCCATAGAGAAACTATTAA  100

seq1  AAAAAAATAGCCAAAACCAGGGCAGTGGAGGGAAGAAGCATTTGGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATAGCCAAAACCAGGGCAGTGGAGGGAAGAAGCATTTGGAGAGA  150

seq1  AGACTCCCCATTTTATTCCTTCCTTCTTCCTTCCTTCCTTCCTTCCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCCCATTTTATTCCTTCCTTCTTCCTTCCTTCCTTCCTTCCTTCT  200

seq1  TCCTTCCTTCCTTCCTTCCTTCCTTCTTCCTTC--------CTTCCTTCC  242
      ||||||||||||| |||||||||||||||||||        |||||||||
seq2  TCCTTCCTTCCTTACTTCCTTCCTTCTTCCTTCCTTCCTTACTTCCTTCC  250

seq1  TTCCTTCCTTCCTCCTTCCTTCCT---TCCTT  271
      ||||||||||||||||| || |||   |||||
seq2  TTCCTTCCTTCCTCCTTTCTACCTTCCTCCTT  282

seq1: chr10_127036156_127037237
seq2: B6Ng01-256I11.g_65_1143 (reverse)

seq1  TTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCGCTGT  50
      ||||||||  || ||||||| |||| | |||||||| ||  |||||||||
seq2  TTTGAGACCAGGGTTCTCTG-GTAG-CATGGCTGTCTTG--ACTCGCTGT  46

seq1  GTAGACCAGGCTGGCCCCTTGAACTCAGAAATCTGCCCAGCACTGGGATT  100
      ||||||||||||| ||   |  |||||||||||||||||||||||||| |
seq2  GTAGACCAGGCTGACC---TAGACTCAGAAATCTGCCCAGCACTGGGAAT  93

seq1  AAAGGCGTGCGCCATGACGACCGGCAAGTCTCTA-GATACATCAACACAC  149
      |||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  AAAGGCGTGCGCCATGACGACCGGCAGGTCTCTAGGATACATCAACACAC  143

seq1  CCAAAGATTGTAGAACACGCACCACG-TCCCTTGAAGACGAAAGAACTCC  198
      |||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  CCAAAGATTGTAGAACACGCACCACGTTCCTTTGAAGACGAAAGAACTCC  193

seq1  ATTTCTACATTAGCTACATCCCCAGGGAACACACTT-GGTTCTGGTCCTT  247
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTTCTACATTAGCTACATCCCCAGGGAACACACTTGGGTTCTGGTCCTT  243

seq1  ATTTCTTCCATGCTACTT-CCAATGCTGTGCTCTGCCCTGGGTCCAGCTG  296
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTTCTTCCATGCTACTTCCCAATGCTGTGCTCTGCCCTGGGTCCAGCTG  293

seq1  GGTTCTGAGCACTGGTAAACCATCAGTAAATGGGATGGTACATTTGGGGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGAGCACTGGTAAACCATCAGTAAATGGGATGGTACATTTGGGGC  343

seq1  ATGTAGCCCATGACCACTCCATACGTGTCACCTCTTCCCGAACCCCAGTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCCCATGACCACTCCATACGTGTCACCTCTTCCCGAACCCCAGTC  393

seq1  TTTCCTACCTTCCCTTTCGACCTGTGACCTCCCGAGTTACGGTGGCCAAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTACCTTCCCTTTCGACCTGTGACCTCCCGAGTTACGGTGGCCAAC  443

seq1  GGGGTGGGCGTGGGCACTGAAACTGGTGTTCTTATTTCACACTGACTCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGCGTGGGCACTGAAACTGGTGTTCTTATTTCACACTGACTCTG  493

seq1  TTGAGAGACTCTCCCCACAGAACGGAGCTTCCCTCAATGGAAGGAGTTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGACTCTCCCCACAGAACGGAGCTTCCCTCAATGGAAGGAGTTCC  543

seq1  CCCTACATGGAGGAACTTCCCCCTATGGAAAGGAGCTTTGCCTGCACAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACATGGAGGAACTTCCCCCTATGGAAAGGAGCTTTGCCTGCACAAA  593

seq1  GGAGCTCTCTGTGCTGGAACTTGACCGACTGAAAGGGGCCTCTCCGTGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCTCTGTGCTGGAACTTGACCGACTGAAAGGGGCCTCTCCGTGTT  643

seq1  ACAGGCTCCAGTGACCCCAGGAGCTCCTGGCGTTATGAATTCCACCTGAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTCCAGTGACCCCAGGAGCTCCTGGCGTTATGAATTCCACCTGAC  693

seq1  TGCAGATGCCGCAGGTCAGGCATTATCTTTACATTTCCTCCCCGGTGCCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATGCCGCAGGTCAGGCATTATCTTTACATTTCCTCCCCGGTGCCA  743

seq1  GACGCACACTACGCACACGTATTGATTGGCTTAACAAATATTTACTGAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCACACTACGCACACGTATTGATTGGCTTAACAAATATTTACTGAAT  793

seq1  ACCGAATCCTCCCTCTGTTGTCCTGGAGCCAGGGCATCCTTCCCCCTTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAATCCTCCCTCTGTTGTCCTGGAGCCAGGGCATCCTTCCCCCTTCT  843

seq1  CTTCCCTGGCCTTGGAATGCCGAGGACATTGGCAGAGGACAGTTTGCAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTGGCCTTGGAATGCCGAGGACATTGGCAGAGGACAGTTTGCAGT  893

seq1  CCCACTGAGGGATCTGGCTAGTGAGGCGAGCCTGGCAGGTTTGACTAAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGAGGGATCTGGCTAGTGAGGCGAGCCTGGCAGGTTTGACTAAAT  943

seq1  AACACGGCCTCGTGTTCCTGTTTGCTACCAAATCCTGACTTCAGCTCTTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGGCCTCGTGTTCCTGTTTGCTACCAAATCCTGACTTCAGCTCTTG  993

seq1  CTCATTCTACCAGCAAGTCCAGAAGTTATCATAACTTCTTCCCTGACTAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTACCAGCAAGTCCAGAAGTTATCATAACTTCTTCCCTGACTAC  1043

seq1  CCTTCCTGCCCCTGCTTATACACCCAGCCAGAATTC  1082
      ||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGCCCCTGCTTATACACCCAGCCAGAATTC  1079