BAC Information

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BAC

Clone NameB6Ng01-257K18
Chromosome10 (Build37)
Map Location 115,560,357 - 115,665,847
singlet/doubletdoublet
Overlap genePtprr
Upstream geneTph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, 4933416C03Rik
Downstream genePtprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257K18.bB6Ng01-257K18.g
ACCGA063309GA063310
length1,1381,024
definitionB6Ng01-257K18.b B6Ng01-257K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,560,357 - 115,561,495)(115,664,826 - 115,665,847)
sequence
gaattcaagtgtatgaacatctacacagacatatgtacacaccttcatga
acacacaaaaccaacacacacacatacagaggctcacacacaaaagctaa
atcaccatataattaaactctgggttgatttcacagctccagaaagcaga
agatacaatttccccattgttaagtctactccatgaagattataatgagt
ctgtggctggtaaaaatgaaaatatatctgcaataataatgtaaacatca
aaaactaattttattccatgtgcagaacactgttaggaagaacatttttt
tttccttaagcctgaaatgatatcctcatgatagatcaacatattgacct
ccttctcaagccaccagctgagttcggagtgagaaaagaaagcgtatttg
cttcttgtcattaatagttaattgttattgcagcctctcagatgggagat
gcagggtagggaaattatatccatcttttgtaaaagtgctgcaacgttat
taaaggtgatcacatggctgaaaataaatgtcttccttgggggaataaag
ggagttggcacatagatttttctttctcccttctctcaagcactttataa
gtagtccacatgggacaataaaacagtgttaatgctttgcgaaggcccct
gtgtgctggaatgttgtgcacttgtgtgccccagaagcatgcctttcaga
gtgtggcacaggtgtccattatcatttcgcacactactggactgtgactt
tcatccactccattgctgatggttcatgtgcagggttttagaacattatt
ttccattactgtgtactggctcctgatctaaccacctctgagattttgtg
gcttccctaagtaaagggaaagaacagaagaaattttaccaataaagctt
aactcatggagagaaaaataaaaaatgtaactgccttaggacacagaaga
aagatgacattggcaacacccattgagagtacaactgctaagaggcttct
gactggagttgtagacatctggaatctgggtacggcatctaaacaaataa
gctgctattaaataaacagtcaatgttaataaaaccattgatgttttgga
ctatttggatcatgagatccgtacagggcatcgaggat
gaattccttataaccacagtgttccatttgtgttataaatgggatttgtg
aaagaaaaggatctacacctccttaacaagaagatagcattcttacctag
caagactatagaccccatggctcagatggtcagagtcaggatagactggt
cctgttcccacctgtgagacctcaaactgaacacatccttatacgaccaa
gctcaagaaataggcaagaatttcaaaaggacataggcaagtactttaag
attttcttataaaaatacagtctttcttaaagtaaagttcttaaatagat
tgaacaaattagagtgaaatgaaataaaatgactgtggtgttatttgata
atgaagaaaattaaatccttcagtcttacaggatatttttctcattcaat
tagcatacagtagtatacattgaccctttaaaataataatttaccctgtt
cttctctttctttcttttttttaaaaaagatttatttattcatttcatgt
atgtgagtacacagtcgctgtctttagacacaccagaagagggcatcaga
tcccactaaagatggttgtgaggcaccatgtggttgctgggatttgaact
caggacctctggaagagtggtcagtgatcttaactgctgagccatctctt
tagccctatactgttgtcttcatgcatgtatataatgcactttgactaca
ctcgctaccttctattcttccagtttcctttgtccaagctctctttggta
aagctaactaaacaagaaaatgaggaaacttatccagaacttcactcaag
ttgtccccatagtctctgaaaactcgagaaaagccagactctatcatgaa
tcgaaaacttggatacagggaagaactcagagagagggagagagagagag
agagagagagagagagagagagagagagagagagtgagagaaaattcctt
accttttgttgatttagacattgaagaatagttcctactccactgaaaca
tttaaatatcttggtcctaggtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_115560357_115561495
seq2: B6Ng01-257K18.b_44_1181

seq1  GAATTCAAGTGTATGAACATCTACACAGACATATGTACACACCTTCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGTATGAACATCTACACAGACATATGTACACACCTTCATGA  50

seq1  ACACACAAAACCAACACACACACATACAGAGGCTCACACACAAAAGCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAAACCAACACACACACATACAGAGGCTCACACACAAAAGCTAA  100

seq1  ATCACCATATAATTAAACTCTGGGTTGATTTCACAGCTCCAGAAAGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCATATAATTAAACTCTGGGTTGATTTCACAGCTCCAGAAAGCAGA  150

seq1  AGATACAATTTCCCCATTGTTAAGTCTACTCCATGAAGATTATAATGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAATTTCCCCATTGTTAAGTCTACTCCATGAAGATTATAATGAGT  200

seq1  CTGTGGCTGGTAAAAATGAAAATATATCTGCAATAATAATGTAAACATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTGGTAAAAATGAAAATATATCTGCAATAATAATGTAAACATCA  250

seq1  AAAACTAATTTTATTCCATGTGCAGAACACTGTTAGGAAGAACATTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAATTTTATTCCATGTGCAGAACACTGTTAGGAAGAACATTTTTT  300

seq1  TTTCCTTAAGCCTGAAATGATATCCTCATGATAGATCAACATATTGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAAGCCTGAAATGATATCCTCATGATAGATCAACATATTGACCT  350

seq1  CCTTCTCAAGCCACCAGCTGAGTTCGGAGTGAGAAAAGAAAGCGTATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCAAGCCACCAGCTGAGTTCGGAGTGAGAAAAGAAAGCGTATTTG  400

seq1  CTTCTTGTCATTAATAGTTAATTGTTATTGCAGCCTCTCAGATGGGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTCATTAATAGTTAATTGTTATTGCAGCCTCTCAGATGGGAGAT  450

seq1  GCAGGGTAGGGAAATTATATCCATCTTTTGTAAAAGTGCTGCAACGTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTAGGGAAATTATATCCATCTTTTGTAAAAGTGCTGCAACGTTAT  500

seq1  TAAAGGTGATCACATGGCTGAAAATAAATGTCTTCCTTGGGGGAATAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTGATCACATGGCTGAAAATAAATGTCTTCCTTGGGGGAATAAAG  550

seq1  GGAGTTGGCACATAGATTTTTCTTTCTCCCTTCTCTCAAGCACTTTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGGCACATAGATTTTTCTTTCTCCCTTCTCTCAAGCACTTTATAA  600

seq1  GTAGTCCACATGGGACAATAAAACAGTGTTAATGCTTTGCGAAGGCCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCCACATGGGACAATAAAACAGTGTTAATGCTTTGCGAAGGCCCCT  650

seq1  GTGTGCTGGAATGTTGTGCACTTGTGTGCCCCAGAAGCATGCCTTTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTGGAATGTTGTGCACTTGTGTGCCCCAGAAGCATGCCTTTCAGA  700

seq1  GTGTGGCACAGGTGTCCATTATCATTTCGCACACTACTGGACTGTGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCACAGGTGTCCATTATCATTTCGCACACTACTGGACTGTGACTT  750

seq1  TCATCCACTCCATTGCTGATGGTTCATGTGCAGGGTTTTAGAACATTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCACTCCATTGCTGATGGTTCATGTGCAGGGTTTTAGAACATTATT  800

seq1  TTCCATTACTGTGTACTGGCTCCTGATCTAACCACCTCTGAGATTTTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTACTGTGTACTGGCTCCTGATCTAACCACCTCTGAGATTTTGTG  850

seq1  GCTTCCCTAAGTAAGGGGAAAGAACAGAAGAAATTTTACCAATAAAGCTT  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCTTCCCTAAGTAAAGGGAAAGAACAGAAGAAATTTTACCAATAAAGCTT  900

seq1  AACTCATGGAGAGAAAAATAAAAAATGTAACTGCCTTAGGACACAGAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATGGAGAGAAAAATAAAAAATGTAACTGCCTTAGGACACAGAAGA  950

seq1  AAGATGACATTGGCAACACCCATTGAAGAGTACAACTGCTAAGAGGCTTC  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGATGACATTGGCAACACCCATTG-AGAGTACAACTGCTAAGAGGCTTC  999

seq1  TGACTGGAG-TGTAGACATCTGGAATCT-GGTACGGCATCTTAAACAAAT  1048
      ||||||||| |||||||||||||||||| ||||||||||| |||||||||
seq2  TGACTGGAGTTGTAGACATCTGGAATCTGGGTACGGCATC-TAAACAAAT  1048

seq1  AAGCTGCTA-TAAAT-AACAGTCAATGTTAAATAAAACCATTGATGTTTT  1096
      ||||||||| ||||| ||||||||||||| ||||||||||||||||||||
seq2  AAGCTGCTATTAAATAAACAGTCAATGTT-AATAAAACCATTGATGTTTT  1097

seq1  GGACTATTTGGAATCATGAGATCCGTACAGGGCATCAGAGGAT  1139
      ||||||||||| |||||||||||||||||||||||| ||||||
seq2  GGACTATTTGG-ATCATGAGATCCGTACAGGGCATC-GAGGAT  1138

seq1: chr10_115664826_115665847
seq2: B6Ng01-257K18.g_64_1087 (reverse)

seq1  TGACTTAGGACAAAGAAATTTAAATGTTTCAGTGGAGTAGAGAC-AATCT  49
      |||| |||||| |||| |||||||||||||||||||||||  || | |||
seq2  TGACCTAGGACCAAGATATTTAAATGTTTCAGTGGAGTAGGAACTATTCT  50

seq1  TAAATGTCTAAAATCACAAAAGTTAATGA--TCTCTCTCTCTCTCTCTCT  97
      | ||||||||||   ||||||| ||| ||  | |||||| ||||||||||
seq2  TCAATGTCTAAATCAACAAAAGGTAAGGAATTTTCTCTCACTCTCTCTCT  100

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCTGAG  147
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCT-CTGAG  149

seq1  TTCTTCCCTGTATCCAAGTTTTCGATTCATGATAGAGTCTGGCTTTTCTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCTGTATCCAAGTTTTCGATTCATGATAGAGTCTGGCTTTTCTC  199

seq1  GAGTTTTCAGAGACTATGGGGACAACTTGAGTGAAGTTCTGGATAAGTTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCAGAGACTATGGGGACAACTTGAGTGAAGTTCTGGATAAGTTT  249

seq1  CCTCATTTTCTTGTTTAGTTAGCTTTACCAAAGAGAGCTTGGACAAAGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTTCTTGTTTAGTTAGCTTTACCAAAGAGAGCTTGGACAAAGGA  299

seq1  AACTGGAAGAATAGAAGGTAGCGAGTGTAGTCAAAGTGCATTATATACAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAAGAATAGAAGGTAGCGAGTGTAGTCAAAGTGCATTATATACAT  349

seq1  GCATGAAGACAACAGTATAGGGCTAAAGAGATGGCTCAGCAGTTAAGATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAGACAACAGTATAGGGCTAAAGAGATGGCTCAGCAGTTAAGATC  399

seq1  ACTGACCACTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCACTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGG  449

seq1  TGCCTCACAACCATCTTTAGTGGGATCTGATGCCCTCTTCTGGTGTGTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCACAACCATCTTTAGTGGGATCTGATGCCCTCTTCTGGTGTGTCT  499

seq1  AAAGACAGCGACTGTGTACTCACATACATGAAATGAATAAATAAATCTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGCGACTGTGTACTCACATACATGAAATGAATAAATAAATCTTT  549

seq1  TTTAAAAAAAAGAAAGAAAGAGAAGAACAGGGTAAATTATTATTTTAAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAAAGAAAGAAAGAGAAGAACAGGGTAAATTATTATTTTAAAG  599

seq1  GGTCAATGTATACTACTGTATGCTAATTGAATGAGAAAAATATCCTGTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATGTATACTACTGTATGCTAATTGAATGAGAAAAATATCCTGTAA  649

seq1  GACTGAAGGATTTAATTTTCTTCATTATCAAATAACACCACAGTCATTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAGGATTTAATTTTCTTCATTATCAAATAACACCACAGTCATTTT  699

seq1  ATTTCATTTCACTCTAATTTGTTCAATCTATTTAAGAACTTTACTTTAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTTCACTCTAATTTGTTCAATCTATTTAAGAACTTTACTTTAAG  749

seq1  AAAGACTGTATTTTTATAAGAAAATCTTAAAGTACTTGCCTATGTCCTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGTATTTTTATAAGAAAATCTTAAAGTACTTGCCTATGTCCTTT  799

seq1  TGAAATTCTTGCCTATTTCTTGAGCTTGGTCGTATAAGGATGTGTTCAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCTTGCCTATTTCTTGAGCTTGGTCGTATAAGGATGTGTTCAGT  849

seq1  TTGAGGTCTCACAGGTGGGAACAGGACCAGTCTATCCTGACTCTGACCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTCTCACAGGTGGGAACAGGACCAGTCTATCCTGACTCTGACCAT  899

seq1  CTGAGCCATGGGGTCTATAGTCTTGCTAGGTAAGAATGCTATCTTCTTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCATGGGGTCTATAGTCTTGCTAGGTAAGAATGCTATCTTCTTGT  949

seq1  TAAGGAGGTGTAGATCCTTTTCTTTCACAAATCCCATTTATAACACAAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGGTGTAGATCCTTTTCTTTCACAAATCCCATTTATAACACAAAT  999

seq1  GGAACACTGTGGTTATAAGGAATTC  1022
      |||||||||||||||||||||||||
seq2  GGAACACTGTGGTTATAAGGAATTC  1024