BAC Information

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BAC

Clone NameB6Ng01-258K12
Chromosome10 (Build37)
Map Location 87,400,263 - 87,554,126
singlet/doubletdoublet
Overlap geneTyms-ps, Pmch
Upstream geneStab2, 1700113H08Rik, Ascl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1
Downstream gene4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258K12.bB6Ng01-258K12.g
ACCGA064040GA064041
length1,1491,116
definitionB6Ng01-258K12.b B6Ng01-258K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,400,263 - 87,401,408)(87,552,997 - 87,554,126)
sequence
gaattcataccacagtatcacattggcacaagtattagtagaaaggcaag
ttatcgagtacagaaattcccctcctgtctaaaggagtccgaacctattt
tgctttgtgtaagcctacctttaagtctttggaaagttacccaactagga
gtcatgtgactggcccttgagcttaaggaagttagacagatgttgggttt
ttttttttctttcatattggtccatgtaccattggtagttgatctcacct
tgactcccagtctttgttcctttaaaggatgttctactaacatcctgcag
ctgtcctccaaatccctgacggggtttgtctcccatgccccgagtcttct
caggagttccttttcttcctctacccaggatgaaacctttcccctccctc
cacatccatctaacctagtcacacctttttctaaaatgttctgtagataa
tgaaatgagaggttattaggcatgtggtagagcagggtttccaatttgac
accaatcatcattattaatacaaacccatcaaggaatttctgactgttct
caggcctcattgttaagaccccatcctattctgaaatgcttccaggaact
aaacaactttttttgttgctttgtttttgttttgttttgttttgttttat
tttttgttgttgttttgttggttttttctttttttttcttttttttttat
taaatattttctttattttcaaatgttattccctttcccggtttcctccc
ctcccagaaccccctattccatcctccctccccctgcatctagaagggtg
ttcctccacccatccactcaagcctacctccccacccactattcccctac
aatagggtcctttcataggaccagggaccctctcctcccattgatgcatg
acaaagccatcctctgctacatatgtagctgggagccatgtgtactcttt
gttgatgacttagtcctctggggagcttctgaagggtctggttggttgat
gttgttgtcctcctaatgaagttgcaaaccctttcactccttcagtcttt
ctaacctcctctatgggtaatacccgcgcctcgaccggccaggaagaagc
aacaaactggaaatcgtctgcggcaagcttcattgcctaacttcttcag
gaattcttattgtcatcatcgttcatgaaaccgctctcgtcgtttttgta
ttgttccagagaaggggcgacaacggatctttctgcagtatcttccttct
gaaaggctttccccattcgaaatgtattaaatactatgtcatcttccaaa
ttccttatggacttggaagctgaaagtaaaataccttgagaaaacaaaga
aaaagccagcattaacatgtaggaagagagagtcatctttgccatcctta
gtttgatgcttgcataaagccaaacaagagtgcattggatgaaaactttc
acactctgccagtggctaaatgatccccacctttatatactttctgtctg
aatagaaagcacttgaaggccttatcttttcagtttagaaatgactcacc
ccgtagagcctttgtaaagctgcgaatgcttgcattgttttggatttagt
ggcctgttgtttatttcgtgtgtaaattttctcagaatctgattaaggtc
tttgagagaaggctttctgtgagtagattataggctcttcaaagtgggat
gttattaaggaagaccacaggataccaggctcgcctgctattacagtttc
cttctgcgtattttctgattaagatattaaaacatgttatttaattcatg
gataataagataaaagttttatgcccttttaatccttattaaatagaagt
tatctctagaaaagagcttcctttataaatacttgatatggtcttttgtg
attaaagtacatatacttgtccgtataaacaacaacagcaaaacctgttc
acacttcttcatctaaaacttatctgtctgctgtttttatctgagtccct
cctaatgcatttagtaaataattgataaaaagtctgtgagaagatattca
tggtctccataaggagtagttttagaagtttaggttttttgcttcatttc
tatttattgagacaggtcttgctatgtagccctggctggccttaaattta
tggcatctctactcacctgccagtgctgggctacaggtatgtgctgtgcc
accatcacagcttagaaattgtgtttttgaaggcatattccaaataattc
tagattctgatgagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_87400263_87401408
seq2: B6Ng01-258K12.b_44_1192

seq1  GAATTCATACCACAGTATCACATTGGCACAAGTATTAGTAGAAAGGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACCACAGTATCACATTGGCACAAGTATTAGTAGAAAGGCAAG  50

seq1  TTATCGAGTACAGAAATTCCCCTCCTGTCTAAAGGAGTCCGAACCTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGAGTACAGAAATTCCCCTCCTGTCTAAAGGAGTCCGAACCTATTT  100

seq1  TGCTTTGTGTAAGCCTACCTTTAAGTCTTTGGAAAGTTACCCAACTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTGTAAGCCTACCTTTAAGTCTTTGGAAAGTTACCCAACTAGGA  150

seq1  GTCATGTGACTGGCCCTTGAGCTTAAGGAAGTTAGACAGATGTTGGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTGACTGGCCCTTGAGCTTAAGGAAGTTAGACAGATGTTGGGTTT  200

seq1  TTTTTTTTCTTTCATATTGGTCCATGTACCATTGGTAGTTGATCTCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTTTCATATTGGTCCATGTACCATTGGTAGTTGATCTCACCT  250

seq1  TGACTCCCAGTCTTTGTTCCTTTAAAGGATGTTCTACTAACATCCTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCAGTCTTTGTTCCTTTAAAGGATGTTCTACTAACATCCTGCAG  300

seq1  CTGTCCTCCAAATCCCTGACGGGGTTTGTCTCCCATGCCCCGAGTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCCAAATCCCTGACGGGGTTTGTCTCCCATGCCCCGAGTCTTCT  350

seq1  CAGGAGTTCCTTTTCTTCCTCTACCCAGGATGAAACCTTTCCCCTCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTCCTTTTCTTCCTCTACCCAGGATGAAACCTTTCCCCTCCCTC  400

seq1  CACATCCATCTAACCTAGTCACACCTTTTTCTAAAATGTTCTGTAGATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCATCTAACCTAGTCACACCTTTTTCTAAAATGTTCTGTAGATAA  450

seq1  TGAAATGAGAGGTTATTAGGCATGTGGTAGAGCAGGGTTTCCAATTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAGAGGTTATTAGGCATGTGGTAGAGCAGGGTTTCCAATTTGAC  500

seq1  ACCAATCATCATTATTAATACAAACCCATCAAGGAATTTCTGACTGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCATCATTATTAATACAAACCCATCAAGGAATTTCTGACTGTTCT  550

seq1  CAGGCCTCATTGTTAAGACCCCATCCTATTCTGAAATGCTTCCAGGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTCATTGTTAAGACCCCATCCTATTCTGAAATGCTTCCAGGAACT  600

seq1  AAACAACTTTTTTTGTTGCTTTGTTTTTGTTTTGTTTTGTTTTGTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACTTTTTTTGTTGCTTTGTTTTTGTTTTGTTTTGTTTTGTTTTAT  650

seq1  TTTTTGTTGTTGTTTTGTTGGTTTTTTCTTTTTTTTTCTTTTTTTTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGTTGTTTTGTTGGTTTTTTCTTTTTTTTTCTTTTTTTTTTAT  700

seq1  TAAATATTTTCTTTATTTTCAAATGTTATTCCCTTTCCCGGTTTCCTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTTCTTTATTTTCAAATGTTATTCCCTTTCCCGGTTTCCTCCC  750

seq1  CTCCCAGAACCCCCTATTCCATCCTCCCTCCCCCTGCATCTAGAAGGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGAACCCCCTATTCCATCCTCCCTCCCCCTGCATCTAGAAGGGTG  800

seq1  TTCCTCCACCCATCCACTCAAGCCTACCTCCCCACCCACTATTCCCCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCACCCATCCACTCAAGCCTACCTCCCCACCCACTATTCCCCTAC  850

seq1  AATAGGGTCC-TTCATAGGACCAGGGA-CCTCTCCTCCCATTGATGCATG  898
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  AATAGGGTCCTTTCATAGGACCAGGGACCCTCTCCTCCCATTGATGCATG  900

seq1  ACAAAGCCATCCTCTGCTACATATGTAGCT-GGAGCCATGTGTACTCCTT  947
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  ACAAAGCCATCCTCTGCTACATATGTAGCTGGGAGCCATGTGTACT-CTT  949

seq1  TGTTGATGACTTAGT-CTCT-GGGAGC-TCTGAAGGGTCTGGTTGGTTGA  994
      ||||||||||||||| |||| |||||| ||||||||||||||||||||||
seq2  TGTTGATGACTTAGTCCTCTGGGGAGCTTCTGAAGGGTCTGGTTGGTTGA  999

seq1  TGTTGTTGTTCTTCCTATGAAGTTGCAAACCCCTTCAACTCCTTCAGTCT  1044
      ||||||||| || |  |||||||||||||||| ||| |||||||||||| 
seq2  TGTTGTTGTCCTCCTAATGAAGTTGCAAACCCTTTC-ACTCCTTCAGTC-  1047

seq1  TTTCTAA-CTCCTCTATTGGGTATTACCCGCG-CTCGACCGGCCAGGAAA  1092
      ||||||| |||||||| |||||| |||||||| |||||||||||||| ||
seq2  TTTCTAACCTCCTCTA-TGGGTAATACCCGCGCCTCGACCGGCCAGG-AA  1095

seq1  GACGCAACAAACTGG-AATCGTCTGCGGCAAAAGCTTCATTG-CTTACAT  1140
      || |||||||||||| |||||||||||||  ||||||||||| || || |
seq2  GAAGCAACAAACTGGAAATCGTCTGCGGC--AAGCTTCATTGCCTAACTT  1143

seq1  CTTCAG  1146
      ||||||
seq2  CTTCAG  1149

seq1: chr10_87552997_87554126
seq2: B6Ng01-258K12.g_67_1182 (reverse)

seq1  TACTCATTAGAATCTTAGAATTAATTTTGAAATATGCTTTTAAAAACACA  50
      ||||||| |||||| ||||||||  |||| ||||||| || |||||||||
seq2  TACTCATCAGAATC-TAGAATTA--TTTGGAATATGCCTTCAAAAACACA  47

seq1  ATTTCTAAGCTGGTGATGGTGGCACAGCACATACCTGTAAGCCCAGCACT  100
      ||||||||||| |||||||||||||||||||||||||| |||||||||| 
seq2  ATTTCTAAGCT-GTGATGGTGGCACAGCACATACCTGT-AGCCCAGCAC-  94

seq1  TGGCAGGGTGAGGTAGGAGGATTGCCATAAATTTAAGGCCAGCCAGGGCT  150
      ||||| ||||| ||| |||   ||||||||||||||||||||||||||||
seq2  TGGCA-GGTGA-GTA-GAG--ATGCCATAAATTTAAGGCCAGCCAGGGCT  139

seq1  ACATAGCAAGACCCTGTCTCAATAAATAGAAATGAAGCAAAAAACCTAAA  200
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  ACATAGCAAGA-CCTGTCTCAATAAATAGAAATGAAGCAAAAAACCT-AA  187

seq1  ACTTCTAAAACTACTCCTTATGGAGACCATGAATATTCTTCTCACAGACT  250
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTTCTAAAACTACTCCTTATGGAGACCATGAATA-TCTTCTCACAGACT  236

seq1  TTTTATCAATTATTTACTAAATGCATTAGGAGGAACTCAGATAAAAACAG  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTTATCAATTATTTACTAAATGCATTAGGAGGGACTCAGATAAAAACAG  286

seq1  CAGACAGATAAGTTTTAGATGAAGAAGTGTGAACAGGTTTTGCTGTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGATAAGTTTTAGATGAAGAAGTGTGAACAGGTTTTGCTGTTGTT  336

seq1  GTTTATACGGACAAGTATATGTACTTTAATCACAAAAGACCATATCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATACGGACAAGTATATGTACTTTAATCACAAAAGACCATATCAAGT  386

seq1  ATTTATAAAGGAAGCTCTTTTCTAGAGATAACTTCTATTTAATAAGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAAGGAAGCTCTTTTCTAGAGATAACTTCTATTTAATAAGGATT  436

seq1  AAAAGGGCATAAAACTTTTATCTTATTATCCATGAATTAAATAACATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGCATAAAACTTTTATCTTATTATCCATGAATTAAATAACATGTT  486

seq1  TTAATATCTTAATCAGAAAATACGCAGAAGGAAACTGTAATAGCAGGCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATCTTAATCAGAAAATACGCAGAAGGAAACTGTAATAGCAGGCGA  536

seq1  GCCTGGTATCCTGTGGTCTTCCTTAATAACATCCCACTTTGAAGAGCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTATCCTGTGGTCTTCCTTAATAACATCCCACTTTGAAGAGCCTA  586

seq1  TAATCTACTCACAGAAAGCCTTCTCTCAAAGACCTTAATCAGATTCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTACTCACAGAAAGCCTTCTCTCAAAGACCTTAATCAGATTCTGAG  636

seq1  AAAATTTACACACGAAATAAACAACAGGCCACTAAATCCAAAACAATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTACACACGAAATAAACAACAGGCCACTAAATCCAAAACAATGCA  686

seq1  AGCATTCGCAGCTTTACAAAGGCTCTACGGGGTGAGTCATTTCTAAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCGCAGCTTTACAAAGGCTCTACGGGGTGAGTCATTTCTAAACTG  736

seq1  AAAAGATAAGGCCTTCAAGTGCTTTCTATTCAGACAGAAAGTATATAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATAAGGCCTTCAAGTGCTTTCTATTCAGACAGAAAGTATATAAAG  786

seq1  GTGGGGATCATTTAGCCACTGGCAGAGTGTGAAAGTTTTCATCCAATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGATCATTTAGCCACTGGCAGAGTGTGAAAGTTTTCATCCAATGCA  836

seq1  CTCTTGTTTGGCTTTATGCAAGCATCAAACTAAGGATGGCAAAGATGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTTGGCTTTATGCAAGCATCAAACTAAGGATGGCAAAGATGACT  886

seq1  CTCTCTTCCTACATGTTAATGCTGGCTTTTTCTTTGTTTTCTCAAGGTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCCTACATGTTAATGCTGGCTTTTTCTTTGTTTTCTCAAGGTAT  936

seq1  TTTACTTTCAGCTTCCAAGTCCATAAGGAATTTGGAAGATGACATAGTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTCAGCTTCCAAGTCCATAAGGAATTTGGAAGATGACATAGTAT  986

seq1  TTAATACATTTCGAATGGGGAAAGCCTTTCAGAAGGAAGATACTGCAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACATTTCGAATGGGGAAAGCCTTTCAGAAGGAAGATACTGCAGAA  1036

seq1  AGATCCGTTGTCGCCCCTTCTCTGGAACAATACAAAAACGACGAGAGCGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCGTTGTCGCCCCTTCTCTGGAACAATACAAAAACGACGAGAGCGG  1086

seq1  TTTCATGAACGATGATGACAATAAGAATTC  1130
      ||||||||||||||||||||||||||||||
seq2  TTTCATGAACGATGATGACAATAAGAATTC  1116