BAC Information

Click to search

BAC

Clone NameB6Ng01-258P07
Chromosome10 (Build37)
Map Location 42,015,567 - 42,131,018
singlet/doubletdoublet
Overlap geneLace1, LOC666540
Upstream geneA530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik, Sesn1, Armc2, 1700016J18Rik, LOC624784, Foxo3a
Downstream geneSnx3, Nr2e1, c222389, Ostm1, Sec63, Scml4, EG666569, C230040G06, Sobp, 9030612E09Rik, Pdss2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258P07.bB6Ng01-258P07.g
ACCGA064262GA064263
length1,1461,082
definitionB6Ng01-258P07.b B6Ng01-258P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,015,567 - 42,016,714)(42,129,928 - 42,131,018)
sequence
gaattcacactgattgtagtagcagtagtagtagtagtagcagcagcagc
agtagtagtagcagtactgaactagctatgcagtgaaggatgaccttgaa
cttgatccttctgcctccacctcccgaatgctcagttctatgatgctggg
gcttaaacccagggcttcgataatttcccagcgctgtgcctattatccca
agcctgaggtcggcatggtactgcacacctgtagtcctaacagcactgga
gaggcagagacaagagaaagaagcgctcccggctagcttgcctaacagga
gattttgttcaaaacaaactagcatttctacactcagtctctccttatct
gtctgtggtgcaaccaaaaattccttcacatgaactgatgtccacaccta
caaaactgtcttccttccctgatcacccgacccaacagtttgagacagga
tggcactatgtagccctggctggagtggaaatcactacatagaccaggct
ggccttggcctcacagagacccttcctgcctctgcctctggggtgatggg
attaaaggcaagtgccactatgccaggcttaaaactttcttaaaccattt
ttgtttcaaatataacttttagaaagcatttgttttagatttactttttt
aaattaaacttttgtttggttttttgagacagggtttctctgtgtagccc
tgactatcctagaactgactctatagaccaggctggcctcgtactcagat
ccacctgcctttgtctacagacttctgggattaaagacatgtgctactac
caccagctataattaaacttctgagacgtgttcattagcatgcaatggta
agacgaccttcggagagaggttgtctgtgcactttcccagtttcccccct
aggggcactgaaaggtagcattttacactgggatgctgacactgggctag
gcccccatactgaacagtgccatctgagttaacttatctgctgctcgctg
aaacactgttaccatggcaccttaaagaagaacgatcatttggtttgctg
ttcctaatagaataaaagttcatgggggtgggggagctggaagaatgact
catgttagagcatgaacgtctcttctgaaggtcatgagattcaaat
gaattctgctgtaagagataatgtaagccactgaagctcgcctcagacag
gagggaccagattccaggtgggaggactgcactggccatgatttaaagat
gggcttctgggtagagtgtagtgacatgagggacccagggggacctgcca
ggaaactactgtggactactagacaagaactggctatgtcttagtaccag
acaacagttctccagaggggactgtttgctttgaaagacatttagcaatg
tctggctgttctacccaagtgtaggggtgtcctggcaggcagcagggtta
gggctgggactgctgccagagacattgttagtgcaaagagctattcttca
tgcaaaggaccacgtggacaaacatgtcagaagcgtgcagaataagaaac
ctggtgcagggtgatgatggcagtggatctgcagggaacaactaaacaag
aaacctgtgatttaaaatttcacgcacagaattcttatgtctcatcttcc
gaaattgaagtttttctgttttcatgatactcacaagtttttctagtttc
atgatattccagtagaggaaaaaaaaaatagaattaattggatggtgacc
caacaagtgagcaggtcaggagatcaaattagttaaaaattcagaattaa
cttaatgattaaacttgagaactctatttaaaaacaggaatacagtgtta
aagggaagtagactgggtaagttgggtgactgctcttcaatgtcagtata
atttgggccaccaaaaagaaagcggtccccagaattggacctagagctat
acagaagatgttagaatgtctgcatttttcctttttaaaaattaaaaata
tttattattattattttctgtgcatgagtgctttgcctgcatgtatgtct
gtgcaccacatgcgtgtcttctgccgttggaggctggaagagggcagtgg
atccccggaaactggagttttacagatggttgtgagccatgtggtgtaaa
gaatcaaagtcatgtcctctgcagaagcagcagtgctctaactgctgagc
cattctctcagtccccatatttaacattaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_42015567_42016714
seq2: B6Ng01-258P07.b_48_1193

seq1  GAATTCACACTGATTGTAGTAGCAGTAGTAGTAGTAGTAGCAGCAGCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGATTGTAGTAGCAGTAGTAGTAGTAGTAGCAGCAGCAGC  50

seq1  AGTAGTAGTAGCAGTACTGAACTAGCTATGCAGTGAAGGATGACCTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAGTAGCAGTACTGAACTAGCTATGCAGTGAAGGATGACCTTGAA  100

seq1  CTTGATCCTTCTGCCTCCACCTCCCGAATGCTCAGTTCTATGATGCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCCTTCTGCCTCCACCTCCCGAATGCTCAGTTCTATGATGCTGGG  150

seq1  GCTTAAACCCAGGGCTTCGATAATTTCCCAGCGCTGTGCCTATTATCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAACCCAGGGCTTCGATAATTTCCCAGCGCTGTGCCTATTATCCCA  200

seq1  AGCCTGAGGTCGGCATGGTACTGCACACCTGTAGTCCTAACAGCACTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGGTCGGCATGGTACTGCACACCTGTAGTCCTAACAGCACTGGA  250

seq1  GAGGCAGAGACAAGAGAAAGAAGCGCTCCCGGCTAGCTTGCCTAACAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGACAAGAGAAAGAAGCGCTCCCGGCTAGCTTGCCTAACAGGA  300

seq1  GATTTTGTTCAAAACAAACTAGCATTTCTACACTCAGTCTCTCCTTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTTCAAAACAAACTAGCATTTCTACACTCAGTCTCTCCTTATCT  350

seq1  GTCTGTGGTGCAACCAAAAATTCCTTCACATGAACTGATGTCCACACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGTGCAACCAAAAATTCCTTCACATGAACTGATGTCCACACCTA  400

seq1  CAAAACTGTCTTCCTTCCCTGATCACCCGACCCAACAGTTTGAGACAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTGTCTTCCTTCCCTGATCACCCGACCCAACAGTTTGAGACAGGA  450

seq1  TGGCACTATGTAGCCCTGGCTGGAGTGGAAATCACTACATAGACCAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTATGTAGCCCTGGCTGGAGTGGAAATCACTACATAGACCAGGCT  500

seq1  GGCCTTGGCCTCACAGAGACCCTTCCTGCCTCTGCCTCTGGGGTGATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGGCCTCACAGAGACCCTTCCTGCCTCTGCCTCTGGGGTGATGGG  550

seq1  ATTAAAGGCAAGTGCCACTATGCCAGGCTTAAAACTTTCTTAAACCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGCAAGTGCCACTATGCCAGGCTTAAAACTTTCTTAAACCATTT  600

seq1  TTGTTTCAAATATAACTTTTAGAAAGCATTTGTTTTAGATTTACTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCAAATATAACTTTTAGAAAGCATTTGTTTTAGATTTACTTTTTT  650

seq1  AAATTAAACTTTTGTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAACTTTTGTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCC  700

seq1  TGACTATCCTAGAACTGACTCTATAGACCAGGCTGGCCTCGTACTCAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATCCTAGAACTGACTCTATAGACCAGGCTGGCCTCGTACTCAGAT  750

seq1  CCACCTGCCTTTGTCTACAGACTTCTGGGATTAAAGACATGTGCTACTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCCTTTGTCTACAGACTTCTGGGATTAAAGACATGTGCTACTAC  800

seq1  CACCAGCTATAATTAAACTTCTGAGACGTGTTCATTAGCATGCAATGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCTATAATTAAACTTCTGAGACGTGTTCATTAGCATGCAATGGTA  850

seq1  AGACGACCTTCGGAGAGAGGTTGTCTGTGCACTTTCCCAGTTTCCCCCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGACCTTCGGAGAGAGGTTGTCTGTGCACTTTCCCAGTTTCCCCCCT  900

seq1  AGGGGCACTGAAAGGTAGCATTTTACACTGGGATGCTGACACT-GGCTAG  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGGGGCACTGAAAGGTAGCATTTTACACTGGGATGCTGACACTGGGCTAG  950

seq1  GCCCCCATACTGAACAGTGCCATCTGAGTT-ACTTATCTGCTGCTCCGCT  998
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  GCCCCCATACTGAACAGTGCCATCTGAGTTAACTTATCTGCTGCT-CGCT  999

seq1  GAAACACTGTTACCATGGCACCTTAAAGAAAGACAGATCATTTGGGTTTG  1048
      |||||||||||||||||||||||||||| ||||  |||||||| ||||||
seq2  GAAACACTGTTACCATGGCACCTTAAAG-AAGAACGATCATTT-GGTTTG  1047

seq1  CTGTTCCTAATAG-ATAAAAGTCCATTGGGGGTGGGGGAGCTGGAGAGAT  1097
      ||||||||||||| |||||||| || |||||||||||||||||||   ||
seq2  CTGTTCCTAATAGAATAAAAGTTCA-TGGGGGTGGGGGAGCTGGAAGAAT  1096

seq1  GGCTCAGTGGTTAAGAGCACTGACTGCTCTTCTGAAGGTCTTGAG--TCA  1145
      | |||| ||  | ||||||   ||  |||||||||||||| ||||  |||
seq2  GACTCA-TG--TTAGAGCATGAACGTCTCTTCTGAAGGTCATGAGATTCA  1143

seq1  AAT  1148
      |||
seq2  AAT  1146

seq1: chr10_42129928_42131018
seq2: B6Ng01-258P07.g_67_1148 (reverse)

seq1  TTTTAAATGTTAAAATAATTGGGGGGACTGGAGAG-ATGGCTCAGCAGTT  49
       ||| |||||||||     |  ||||||| ||||| ||||||||||||||
seq2  -TTTTAATGTTAAA-----TATGGGGACT-GAGAGAATGGCTCAGCAGTT  43

seq1  AAGAGCACTGGCTGCTCTTGCAGAGGACATGACTTTGATTCTTTACAACC  99
       |||||||| ||||||  |||||||||||||||||||||||||||| |||
seq2  -AGAGCACT-GCTGCTTCTGCAGAGGACATGACTTTGATTCTTTAC-ACC  90

seq1  ACATGGCTCACAACCATCTGTAAAACTCCAGTTTCCGGGGATCCACTGCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTCACAACCATCTGTAAAACTCCAGTTTCCGGGGATCCACTGCC  140

seq1  CTCTTCCAGCCTCCAACGGCAGAAGACACGCATGTGGTGCACAGACATAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGCCTCCAACGGCAGAAGACACGCATGTGGTGCACAGACATAC  190

seq1  ATGCAGGCAAAGCACTCATGCACAGAAAATAATAATAATAAATATTTTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGCAAAGCACTCATGCACAGAAAATAATAATAATAAATATTTTTA  240

seq1  ATTTTTAAAAAGGAAAAATGCAGACATTCTAACATCTTCTGTATAGCTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAAAGGAAAAATGCAGACATTCTAACATCTTCTGTATAGCTCT  290

seq1  AGGTCCAATTCTGGGGACCGCTTTCTTTTTGGTGGCCCAAATTATACTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAATTCTGGGGACCGCTTTCTTTTTGGTGGCCCAAATTATACTGA  340

seq1  CATTGAAGAGCAGTCACCCAACTTACCCAGTCTACTTCCCTTTAACACTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAGAGCAGTCACCCAACTTACCCAGTCTACTTCCCTTTAACACTG  390

seq1  TATTCCTGTTTTTAAATAGAGTTCTCAAGTTTAATCATTAAGTTAATTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGTTTTTAAATAGAGTTCTCAAGTTTAATCATTAAGTTAATTCT  440

seq1  GAATTTTTAACTAATTTGATCTCCTGACCTGCTCACTTGTTGGGTCACCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTAACTAATTTGATCTCCTGACCTGCTCACTTGTTGGGTCACCA  490

seq1  TCCAATTAATTCTATTTTTTTTTTCCTCTACTGGAATATCATGAAACTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTAATTCTATTTTTTTTTTCCTCTACTGGAATATCATGAAACTAG  540

seq1  AAAAACTTGTGAGTATCATGAAAACAGAAAAACTTCAATTTCGGAAGATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTGTGAGTATCATGAAAACAGAAAAACTTCAATTTCGGAAGATG  590

seq1  AGACATAAGAATTCTGTGCGTGAAATTTTAAATCACAGGTTTCTTGTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAGAATTCTGTGCGTGAAATTTTAAATCACAGGTTTCTTGTTTA  640

seq1  GTTGTTCCCTGCAGATCCACTGCCATCATCACCCTGCACCAGGTTTCTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCCCTGCAGATCCACTGCCATCATCACCCTGCACCAGGTTTCTTA  690

seq1  TTCTGCACGCTTCTGACATGTTTGTCCACGTGGTCCTTTGCATGAAGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCACGCTTCTGACATGTTTGTCCACGTGGTCCTTTGCATGAAGAAT  740

seq1  AGCTCTTTGCACTAACAATGTCTCTGGCAGCAGTCCCAGCCCTAACCCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTGCACTAACAATGTCTCTGGCAGCAGTCCCAGCCCTAACCCTG  790

seq1  CTGCCTGCCAGGACACCCCTACACTTGGGTAGAACAGCCAGACATTGCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCAGGACACCCCTACACTTGGGTAGAACAGCCAGACATTGCTA  840

seq1  AATGTCTTTCAAAGCAAACAGTCCCCTCTGGAGAACTGTTGTCTGGTACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTTCAAAGCAAACAGTCCCCTCTGGAGAACTGTTGTCTGGTACT  890

seq1  AAGACATAGCCAGTTCTTGTCTAGTAGTCCACAGTAGTTTCCTGGCAGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATAGCCAGTTCTTGTCTAGTAGTCCACAGTAGTTTCCTGGCAGGT  940

seq1  CCCCCTGGGTCCCTCATGTCACTACACTCTACCCAGAAGCCCATCTTTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGGGTCCCTCATGTCACTACACTCTACCCAGAAGCCCATCTTTAA  990

seq1  ATCATGGCCAGTGCAGTCCTCCCACCTGGAATCTGGTCCCTCCTGTCTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGCCAGTGCAGTCCTCCCACCTGGAATCTGGTCCCTCCTGTCTGA  1040

seq1  GGCGAGCTTCAGTGGCTTACATTATCTCTTACAGCAGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGCTTCAGTGGCTTACATTATCTCTTACAGCAGAATTC  1082