BAC Information

Click to search

BAC

Clone NameB6Ng01-259N16
Chromosome10 (Build37)
Map Location 21,531,636 - 21,672,962
singlet/doubletdoublet
Overlap geneLOC628133
Upstream geneLOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936
Downstream geneSgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259N16.bB6Ng01-259N16.g
ACCGA064930GA064931
length1,1391,007
definitionB6Ng01-259N16.b B6Ng01-259N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,671,852 - 21,672,962)(21,531,636 - 21,532,440)
sequence
gaattcacagtttgtttttttttttttttcctaaaatcaaagtgcattgt
acttactaacgaacaaaatgaattaacttgtcaaatggaaacagtataat
tgaactagggacaagtttggcgaattaagaaaggagaagccttgaaccct
gggactcaggattgagtccctgacaggtgttcatcaatgccttatccaca
gtcatctacttaaaatttaaacattttaaaaccccacacggcgcttattt
tgcagatcaaaatcagaagtgaacaatgatcaaatacattataagtgtgc
ctacccatggttatgaagtctaaaggctgactctgcagggagggagctgc
ctcctcctagctgttgagctacagaagtgagcacatctggatccctagtg
atcccaggagctttgggtgttgggaggcagccatctggtacaaaggaaat
ctggacagagtgtcccacccaaaagaaagcactgtattgtgctgctatga
aaagcaaccactacacttccctctgataaaacatcagcctctcagctggt
aaaggattcaaagaaatacatgtgcaaaagtgttcactggctgaccaagg
ttccaaaaccaccaccgacctgcagataagaaacacgaaatcaattactt
tcggaaactgcctaggaacagcatgctgccttcattttaaaatgctgctc
tttttataatttcttgttggttatggactttctcctgaccttaggtgtct
ggttggtttttaatccaaaatgaaaaggctggacaccttgaaaaatgtga
gtccctttctagtcttcttatctcatctgtgtggaattcaatggaaatgt
aaaatgtttttttttttatttttcggtctctatatatgaattatgtgaaa
ttatgggaattgataatgatggaattaatttacattatgcattggatgag
aaaagtaaaattgcatctctttagaaggtaagccagttcaaggtctactc
tccagcttattgaactttcagaccatctgagcctacatggacagccccct
agtcccccttcccaacacatttccttttagaattatcaattttttaatgt
tcctaaaggacttaagtctttattggctaaattgctggg
gaattcatctaaaaatccaacacacagtgaatgtgaagtcatttcggcag
cgcctgcctgttttgtgtaagccttagttctgagtatacaacttgtgcac
attgtgccagggacagcccgatgccatacctcagagtgccaatggacacg
gcctgagatactgtggctcacattaagatgattttatgttatgaattgcg
gtgatcttactgtttacataaagttctgttcttacggaaacacaatggtt
taattatgagaaaccaaggttttcagtgttttctcagagtcatttctcag
catgtaagaatcaaattcctgtatctttggattgtagtgtgtaagaatat
ttgatttttaaaattactgtttcggttgctgatttgagttccataaagtt
tcagtaactaaattgacttgggattaggacagaatttctgacagtttctc
aaatggtcttaaataatacttttgctacataaagtagtgttcttagcatt
gatgacaaaaaaaaatcaagatgtcaatcaacttggaaaaatgttgaaga
cattctgtgtcctgcagtatcaaacattcatttggaatttaactctttat
gtgaaaataaatacgcggagtcatctcaccagggtgcaaacttgatttgt
gtcttaacgaatggcaaaattttacatatgctaaagaattgtttttaaat
aaaaatttgaagcaaacttggagtttactaagagaaggattttaagcaca
agtatgacaagaaagagagctgattaagaaggcctgagcacatctaaggc
acaggtttaagcttcttaagagacagttgccaaaggtgtccttacccatt
gagccaccttgctaacccataacaagatttttatgatttttttttgaaca
ttttgatgcatgtttctgtttatgtgcctgtgtgtgtgaacgctataagg
gtaagcttgcgtttgggcattatttgtgctttggtttggtgggtgggttg
ttgttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_21671852_21672962
seq2: B6Ng01-259N16.b_43_1181 (reverse)

seq1  CCCAGATAATTTAG-CAATAAA-ACTTAA--TCTTTA-GAACATTAAAAA  45
      |||||  ||||||| ||||||| ||||||   ||||| ||||||||||||
seq2  CCCAG-CAATTTAGCCAATAAAGACTTAAGTCCTTTAGGAACATTAAAAA  49

seq1  --TGATA--TTTAAAAAGAAA--TGTTGGGGAGGGGG-CTGAGGGGCTGT  88
        |||||  | ||||| ||||  ||||||| |||||| ||  ||||||||
seq2  ATTGATAATTCTAAAAGGAAATGTGTTGGGAAGGGGGACTAGGGGGCTGT  99

seq1  -CATGTA-GCTCAGATGGTCTGGAAG-TCAAT-AGCT-GAGGGTAG-CCT  132
       |||||| |||||||||||||| ||| ||||| |||| ||| |||| |||
seq2  CCATGTAGGCTCAGATGGTCTGAAAGTTCAATAAGCTGGAGAGTAGACCT  149

seq1  TGAACTGGCTTTCCTTCT-AAGTGCTGC-ATTTTAC-TTTCTCAT-CAAT  178
      ||||||||||| |||||| ||| | ||| ||||||| |||||||| ||||
seq2  TGAACTGGCTTACCTTCTAAAGAGATGCAATTTTACTTTTCTCATCCAAT  199

seq1  GCATAATTGTATATTAA-TCCATCATTATCAATT-CCAT-ATTTCACAT-  224
      |||||| |||| ||||| |||||||||||||||| |||| ||||||||| 
seq2  GCATAA-TGTAAATTAATTCCATCATTATCAATTCCCATAATTTCACATA  248

seq1  ATTCATATATAGAGACCGAAAAAT-AAAAAAAAAACATTTTACATTTCCA  273
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTCATATATAGAGACCGAAAAATAAAAAAAAAAACATTTTACATTTCCA  298

seq1  TTGAATTCCACACAGATGAGATAAGAAGACTAGAAA-GGACTCACATTTT  322
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTGAATTCCACACAGATGAGATAAGAAGACTAGAAAGGGACTCACATTTT  348

seq1  TCAAGGTGTCCAGCCTTTTCATTTTGGATTAAAAACCAACCAGACACCTA  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTGTCCAGCCTTTTCATTTTGGATTAAAAACCAACCAGACACCTA  398

seq1  AGGTCAGGAG-AAGTCCATAACCAAC-AGAAATTATAAAAAGAGCAGCAT  420
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  AGGTCAGGAGAAAGTCCATAACCAACAAGAAATTATAAAAAGAGCAGCAT  448

seq1  TTTAAAATGAAGGCAGCATGCTGTTCCTAGGCAGTTTCCGAAAGTAATTG  470
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGAAGGCAGCATGCTGTTCCTAGGCAGTTTCCGAAAGTAATTG  498

seq1  ATTTCGTGTTTCTTATCTGCAGGTCGGTGGTGGTTTTGGAACCTTGGTCA  520
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGTGTTTCTTATCTGCAGGTCGGTGGTGGTTTTGGAACCTTGGTCA  548

seq1  GCCAGTGAACACTTTTGCACATGTATTTCTTTGAATCCTTTACCAGCTGA  570
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGAACACTTTTGCACATGTATTTCTTTGAATCCTTTACCAGCTGA  598

seq1  GAGGCTGATGTTTTATCAGAGGGAAGTGTAGTGGTTGCTTTTCATAGCAG  620
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGATGTTTTATCAGAGGGAAGTGTAGTGGTTGCTTTTCATAGCAG  648

seq1  CACAATACAGTGCTTTCTTTTGGGTGGGACACTCTGTCCAGATTTCCTTT  670
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATACAGTGCTTTCTTTTGGGTGGGACACTCTGTCCAGATTTCCTTT  698

seq1  GTACCAGATGGCTGCCTCCCAACACCCAAAGCTCCTGGGATCACTAGGGA  720
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGATGGCTGCCTCCCAACACCCAAAGCTCCTGGGATCACTAGGGA  748

seq1  TCCAGATGTGCTCACTTCTGTAGCTCAACAGCTAGGAGGAGGCAGCTCCC  770
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATGTGCTCACTTCTGTAGCTCAACAGCTAGGAGGAGGCAGCTCCC  798

seq1  TCCCTGCAGAGTCAGCCTTTAGACTTCATAACCATGGGTAGGCACACTTA  820
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCAGAGTCAGCCTTTAGACTTCATAACCATGGGTAGGCACACTTA  848

seq1  TAATGTATTTGATCATTGTTCACTTCTGATTTTGATCTGCAAAATAAGCG  870
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTATTTGATCATTGTTCACTTCTGATTTTGATCTGCAAAATAAGCG  898

seq1  CCGTGTGGGGTTTTAAAATGTTTAAATTTTAAGTAGATGACTGTGGATAA  920
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTGGGGTTTTAAAATGTTTAAATTTTAAGTAGATGACTGTGGATAA  948

seq1  GGCATTGATGAACACCTGTCAGGGACTCAATCCTGAGTCCCAGGGTTCAA  970
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGATGAACACCTGTCAGGGACTCAATCCTGAGTCCCAGGGTTCAA  998

seq1  GGCTTCTCCTTTCTTAATTCGCCAAACTTGTCCCTAGTTCAATTATACTG  1020
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTCCTTTCTTAATTCGCCAAACTTGTCCCTAGTTCAATTATACTG  1048

seq1  TTTCCATTTGACAAGTTAATTCATTTTGTTCGTTAGTAAGTACAATGCAC  1070
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTTGACAAGTTAATTCATTTTGTTCGTTAGTAAGTACAATGCAC  1098

seq1  TTTGATTTTAGGAAAAAAAAAAAAAAACAAACTGTGAATTC  1111
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTTAGGAAAAAAAAAAAAAAACAAACTGTGAATTC  1139

seq1: chr10_21531636_21532440
seq2: B6Ng01-259N16.g_272_1073

seq1  CTTACTGTTTACATAAAGTTCTGTTCTTACGGAAACACAATGGTTTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGTTTACATAAAGTTCTGTTCTTACGGAAACACAATGGTTTAATT  50

seq1  ATGAGAAACCAAGGTTTTCAGTGTTTTCTCAGAGTCATTTCTCAGCATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAACCAAGGTTTTCAGTGTTTTCTCAGAGTCATTTCTCAGCATGT  100

seq1  AAGAATCAAATTCCTGTATCTTTGGATTGTAGTGTGTAAGAATATTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCAAATTCCTGTATCTTTGGATTGTAGTGTGTAAGAATATTTGAT  150

seq1  TTTTAAAATTACTGTTTCGGTTGCTGATTTGAGTTCCATAAAGTTTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATTACTGTTTCGGTTGCTGATTTGAGTTCCATAAAGTTTCAGT  200

seq1  AACTAAATTGACTTGGGATTAGGACAGAATTTCTGACAGTTTCTCAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATTGACTTGGGATTAGGACAGAATTTCTGACAGTTTCTCAAATG  250

seq1  GTCTTAAATAATACTTTTGCTACATAAAGTAGTGTTCTTAGCATTGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAATAATACTTTTGCTACATAAAGTAGTGTTCTTAGCATTGATGA  300

seq1  CAAAAAAAAATCAAGATGTCAATCAACTTGGAAAAATGTTGAAGACATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAATCAAGATGTCAATCAACTTGGAAAAATGTTGAAGACATTC  350

seq1  TGTGTCCTGCAGTATCAAACATTCATTTGGAATTTAACTCTTTATGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTGCAGTATCAAACATTCATTTGGAATTTAACTCTTTATGTGAA  400

seq1  AATAAATACGCGGAGTCATCTCACCAGGGTGCAAACTTGATTTGTGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATACGCGGAGTCATCTCACCAGGGTGCAAACTTGATTTGTGTCTT  450

seq1  AACGAATGGCAAAATTTTACATATGCTAAAGAATTGTTTTTAAATAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAATGGCAAAATTTTACATATGCTAAAGAATTGTTTTTAAATAAAAA  500

seq1  TTTGAAGCAAACTTGGAGTTTACTAAGAGAAGGATTTTAAGCACAAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCAAACTTGGAGTTTACTAAGAGAAGGATTTTAAGCACAAGTAT  550

seq1  GACAAGAAAGAGAGCTGATTAAGAAGGCCTGAGCACATCTAAGGCACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAAAGAGAGCTGATTAAGAAGGCCTGAGCACATCTAAGGCACAGG  600

seq1  TTTAAGCTTCTTAAGAGACAGTTGCCAAAGGTGTCCTTACCCATTGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCTTCTTAAGAGACAGTTGCCAAAGGTGTCCTTACCCATTGAGCC  650

seq1  ACCTTGCTAACCCATAACAAGATTTTTATGA-TTTTTTTTGAACATTTTT  699
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  ACCTTGCTAACCCATAACAAGATTTTTATGATTTTTTTTTGAACA-TTTT  699

seq1  GATGCATGTTTCTGTTTTATGTGCCTGTGTGTGTGAACGCTAT-AGGGTA  748
      |||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  GATGCATGTTTCTG-TTTATGTGCCTGTGTGTGTGAACGCTATAAGGGTA  748

seq1  AGCTTGCGTTTTGGGCATTATTTTGTTGCTTTGGTTTGGTTGGTTGGTTG  798
      |||||||| ||||||||||||||   |||||||||||||| ||| |||||
seq2  AGCTTGCG-TTTGGGCATTATTT--GTGCTTTGGTTTGGTGGGTGGGTTG  795

seq1  TTGTTGT  805
      |||||||
seq2  TTGTTGT  802