BAC Information

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BAC

Clone NameB6Ng01-260C10
Chromosome10 (Build37)
Map Location 114,228,395 - 114,364,878
singlet/doubletdoublet
Overlap geneTrhde
Upstream gene4930473D10Rik
Downstream geneTph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260C10.bB6Ng01-260C10.g
ACCGA065143GA065144
length1,0651,157
definitionB6Ng01-260C10.b B6Ng01-260C10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,228,395 - 114,229,453)(114,363,720 - 114,364,878)
sequence
gaattcatacacacagtatatatctatgcaaagagggctaccatatattc
tgataatgattaaatgaggaaataccaatttcacagtctggcacctgagg
atgacagcaattgaattttaattcagtatttagaaaaatcaaaagaggtc
ccttggtaaagaaaggcagctagacctggttgcatttaaaggcttttcta
ggttcaagagctcataactagacaattagaaataagatattccccaaata
tggagttttctttttaaaataaaaaaattaaattacacggacagtaagta
ggtgctgcatgttcttccaagtattggctcctctcattcaattcaacttt
gagtgtcaaagtttgggagaataatagaaatatatatggttttgattttt
cctataaggtgtgtaaaccatggcaatatatgtaaatacaagcctaagca
ggtgttataccaaaagctaaggcaaacatgggaaacgtatgaagttgtat
ttgctcaggaagggcttcttggccttgactggcattctcgactgggtaat
cattcatcgtgtgaagccatgcaccttcccactacagccggtagaatctt
ctgtagctttcctctggagtaaaggtgcctctgttgggaaactctagccc
caataactcaaaggcttcccggattcgggaacatgaggattatcctgaaa
acttggatgggagcttaaagatcaatgagtagatcgtgagcgaaccgtag
tgaacacagaaaagcaccctttcagaaaagagtttgacacacgtgtggct
ctacttctgtttggccgggccctggacctattgagcttcagtgtctgcct
ctcacccgtctcaccctgataattcttcttctccacagtcaggaccagtg
tgagacagatgccctcatcagagagcggtacctgtaggattttagaaaca
ccatttcatctcctgtgccaacatttcatgatcacatccgattggtgagg
aaaggagatcttttcctcgttttctgtcatctgaagacatcagatgaagc
ctctagaaatggtta
gaattccatgcatagtctcaacacccgagtatgtttctgtttggtttgct
ggttaattgactcccagacataatggtgacttgagctggaatgagtggga
gattctgtagtatttcagaaaagaagaatcaccaattctagggagttgaa
aaatgatagaaggggcttggccagcaaatcaactcaattatcccttattg
atctcatgagagcactcaaatccttcagggagcacattggttaaggtact
tattttgataggcatggtggtctagtataagccgaaagtggaaatagaac
atgatgctctctggataccattaaagcctcagtgggaataatgaaactat
gtggtaagaccaagtggtacactgacctcagcacaaagactgcacagata
ttttcattgagggacaacagcaagaatgcttagagaatgcatagagatcc
aagctaactgcagggtacagaccctaggcctccaaatatcattgttctct
ctcttgtcatctcaccaaggtgtttatggcatattaattcatccaccatt
aagttttcaatcaattaataattcttgaagaaaacctctataaaatatca
caagaacatactataacgcatttataccaagaagataagagtatgtggtt
atggaatatttaggcttgtaagtatttattaatggttttgagataacact
aatccatggagatcaaacagctactaatgtctaaagtgtgtgtgtgtgtg
tgtggttggcttaggactatgatgacaaatgtagtttgggatcttgaatg
tttcagcatattttaaaggcctcattcgttctctctctttcaattcctgc
aattcttgagtatcaggaactagcagaatgtacttttccctgctctctgt
catatataatgattttccctttgaaatcatgctttgggtgtgcagctcta
gactctgacatatagtaagtagttatcatacaaccaccagctgttctgac
ctatttctcatgaagcatgtgaatatttgtttcatcagacagaaattcag
catattcagtagcacttcatttttaaggtgaaatattaaacatattgttc
ataagacttattatgcctctaatgacttacttgccttcgcttaccatgac
catgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_114228395_114229453
seq2: B6Ng01-260C10.b_39_1103

seq1  GAATTCATACACACAGTATATATCTATGCAAAGAGGGCTACCATATATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACACACAGTATATATCTATGCAAAGAGGGCTACCATATATTC  50

seq1  TGATAATGATTAAATGAGGAAATACCAATTTCACAGTCTGGCACCTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGATTAAATGAGGAAATACCAATTTCACAGTCTGGCACCTGAGG  100

seq1  ATGACAGCAATTGAATTTTAATTCAGTATTTAGAAAAATCAAAAGAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGCAATTGAATTTTAATTCAGTATTTAGAAAAATCAAAAGAGGTC  150

seq1  CCTTGGTAAAGAAAGGCAGCTAGACCTGGTTGCATTTAAAGGCTTTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTAAAGAAAGGCAGCTAGACCTGGTTGCATTTAAAGGCTTTTCTA  200

seq1  GGTTCAAGAGCTCATAACTAGACAATTAGAAATAAGATATTCCCCAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAAGAGCTCATAACTAGACAATTAGAAATAAGATATTCCCCAAATA  250

seq1  TGGAGTTTTCTTTTTAAAATAAAAAAATTAAATTACACGGACAGTAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTTTCTTTTTAAAATAAAAAAATTAAATTACACGGACAGTAAGTA  300

seq1  GGTGCTGCATGTTCTTCCAAGTATTGGCTCCTCTCATTCAATTCAACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGCATGTTCTTCCAAGTATTGGCTCCTCTCATTCAATTCAACTTT  350

seq1  GAGTGTCAAAGTTTGGGAGAATAATAGAAATATATATGGTTTTGATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCAAAGTTTGGGAGAATAATAGAAATATATATGGTTTTGATTTTT  400

seq1  CCTATAAGGTGTGTAAACCATGGCAATATATGTAAATACAAGCCTAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAGGTGTGTAAACCATGGCAATATATGTAAATACAAGCCTAAGCA  450

seq1  GGTGTTATACCAAAAGCTAAGGCAAACATGGGAAACGTATGAAGTTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTATACCAAAAGCTAAGGCAAACATGGGAAACGTATGAAGTTGTAT  500

seq1  TTGCTCAGGAAGGGCTTCTTGGCCTTGACTGGCATTCTCGACTGGGTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGGAAGGGCTTCTTGGCCTTGACTGGCATTCTCGACTGGGTAAT  550

seq1  CATTCATCGTGTGAAGCCATGCACCTTCCCACTACAGCCGGTAGAATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATCGTGTGAAGCCATGCACCTTCCCACTACAGCCGGTAGAATCTT  600

seq1  CTGTAGCTTTCCTCTGGAGTAAAGGTGCCTCTGTTGGGAAACTCTAGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTTTCCTCTGGAGTAAAGGTGCCTCTGTTGGGAAACTCTAGCCC  650

seq1  CAATAACTCAAAGGCTTCCCGGATTCGGGAACATGAGGATTATCCTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACTCAAAGGCTTCCCGGATTCGGGAACATGAGGATTATCCTGAAA  700

seq1  ACTTGGATGGGAGCTTAAAGATCAATGAGTAGATCGTGAGCGAACCGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGATGGGAGCTTAAAGATCAATGAGTAGATCGTGAGCGAACCGTAG  750

seq1  TGAACACAG-AAAGCACCCTTTCAG-AAAGAGTTTGACACACGTGTGGCT  798
      ||||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  TGAACACAGAAAAGCACCCTTTCAGAAAAGAGTTTGACACACGTGTGGCT  800

seq1  CTACTTCTGTTTGGCC-GGCCCTGGACCTATTGAGCTTCAGTGTCTGCCT  847
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTACTTCTGTTTGGCCGGGCCCTGGACCTATTGAGCTTCAGTGTCTGCCT  850

seq1  CTCACCCGTCTCACCCTGATAATTC-TCTTCTCCAACAGTCAGGACCAGT  896
      ||||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  CTCACCCGTCTCACCCTGATAATTCTTCTTCTCC-ACAGTCAGGACCAGT  899

seq1  GTGAGACAGATGCCCTCATCAGAGAGCGGTACCTGTAGGATTTTAGAAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACAGATGCCCTCATCAGAGAGCGGTACCTGTAGGATTTTAGAAAC  949

seq1  ACCATTTCATCTCCTGTGCAAACATTTCATGATCACCTTCGATTGG-GGG  995
      ||||||||||||||||||| |||||||||||||||| | ||||||| | |
seq2  ACCATTTCATCTCCTGTGCCAACATTTCATGATCACATCCGATTGGTGAG  999

seq1  GAAAGGAGATCTTTTTCTTGTTTTCTGTCATTTG-AGACATCAGA-GAAG  1043
      ||||||||||||||| || |||||||||||| || |||||||||| ||||
seq2  GAAAGGAGATCTTTTCCTCGTTTTCTGTCATCTGAAGACATCAGATGAAG  1049

seq1  CTTCTAGAAAGGGTTA  1059
      | |||||||| |||||
seq2  CCTCTAGAAATGGTTA  1065

seq1: chr10_114363720_114364878
seq2: B6Ng01-260C10.g_62_1218 (reverse)

seq1  TTTCAT-GTCATGGGGTAAGCTGAAGGGCAAGTTTAGTGCATTAGA-GCA  48
      |||||| |||||  ||||||| ||| |||||| | ||| ||||||| |||
seq2  TTTCATGGTCAT--GGTAAGC-GAA-GGCAAG-TAAGT-CATTAGAGGCA  44

seq1  TAATAAGTCTTATGA--CATATGTT--ATATTTCCACTTAAAAAATGAAG  94
      |||||||||||||||   |||||||  |||||| ||| | ||||||||||
seq2  TAATAAGTCTTATGAACAATATGTTTAATATTT-CACCTTAAAAATGAAG  93

seq1  TGCTACTGGATATGCCTGAATTTCTGTCCTGATGAAACAAATA-TCACAT  143
      |||||||| ||||| |||||||||||| ||||||||||||||| ||||||
seq2  TGCTACTGAATATG-CTGAATTTCTGT-CTGATGAAACAAATATTCACAT  141

seq1  GCTTCATGAGAAATAGGTCAG-ACAGCTGGTGGTTGTATTGATAACTACT  192
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  GCTTCATGAGAAATAGGTCAGAACAGCTGGTGGTTGTA-TGATAACTACT  190

seq1  TAGTATCTGTCAGAGTCTAGAGCAGCACACCCAAAGCAGGATTTCAAAGG  242
      || ||| |||||||||||||||| |||||||||||||| |||||||||||
seq2  TACTATATGTCAGAGTCTAGAGCTGCACACCCAAAGCATGATTTCAAAGG  240

seq1  GAAAATCATTATATATGACAGAGAGCAGTGAAAAGTACATTCTGCTAGTT  292
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAAAATCATTATATATGACAGAGAGCAGGGAAAAGTACATTCTGCTAGTT  290

seq1  CCTGATACTCAAGAATTGCAGGAATTGAAAGAGAGAGAACGAAAGAGGCC  342
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCTGATACTCAAGAATTGCAGGAATTGAAAGAGAGAGAACGAATGAGGCC  340

seq1  TTTAAAATATGCTGAAACATTCAAGATCCCAAACTACATTTGTCATCATA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATATGCTGAAACATTCAAGATCCCAAACTACATTTGTCATCATA  390

seq1  GTCCTAAGCCAACCACACACACACACACACACTTTAGACCTTAGTAGCTG  442
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTCCTAAGCCAACCACACACACACACACACACTTTAGACATTAGTAGCTG  440

seq1  TTTGATCTCCATGGATTAGTGTTATCTCAAAACCATTAATAAATACTTAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTCCATGGATTAGTGTTATCTCAAAACCATTAATAAATACTTAC  490

seq1  AAGCCTAAATATTCCATAACCACATACTCTTATCTTCTTGGTATAAATGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAAATATTCCATAACCACATACTCTTATCTTCTTGGTATAAATGC  540

seq1  GTTATAGTATGTTCTTGTGATATTTTATAGAGGTTTTCTTCAAGAATTAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGTATGTTCTTGTGATATTTTATAGAGGTTTTCTTCAAGAATTAT  590

seq1  TAATTGATTGAAAACTTAATGGTGGATGAATTAATATGCCATAAACACCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATTGAAAACTTAATGGTGGATGAATTAATATGCCATAAACACCT  640

seq1  TGGTGAGATGACAAGAGAGAGAACAATGATATTTGGAGGCCTAGGGTCTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGATGACAAGAGAGAGAACAATGATATTTGGAGGCCTAGGGTCTG  690

seq1  TACCCTGCAGTTAGCTTGGATCTCTATGCATTCTCTAAGCATTCTTGCTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGCAGTTAGCTTGGATCTCTATGCATTCTCTAAGCATTCTTGCTG  740

seq1  TTGTCCCTCAATGAAAATATCTGTGCAGTCTTTGTGCTGAGGTCAGTGTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTCAATGAAAATATCTGTGCAGTCTTTGTGCTGAGGTCAGTGTA  790

seq1  CCACTTGGTCTTACCACATAGTTTCATTATTCCCACTGAGGCTTTAATGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGTCTTACCACATAGTTTCATTATTCCCACTGAGGCTTTAATGG  840

seq1  TATCCAGAGAGCATCATGTTCTATTTCCACTTTCGGCTTATACTAGACCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGAGAGCATCATGTTCTATTTCCACTTTCGGCTTATACTAGACCA  890

seq1  CCATGCCTATCAAAATAAGTACCTTAACCAATGTGCTCCCTGAAGGATTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCTATCAAAATAAGTACCTTAACCAATGTGCTCCCTGAAGGATTT  940

seq1  GAGTGCTCTCATGAGATCAATAAGGGATAATTGAGTTGATCTGCTGGCCA  992
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAGTGCTCTCATGAGATCAATAAGGGATAATTGAGTTGATTTGCTGGCCA  990

seq1  AGCCCCTTCTATCATTTTTCAACTCCCTAGAATTGGTGATTCTTCTTTTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTTCTATCATTTTTCAACTCCCTAGAATTGGTGATTCTTCTTTTC  1040

seq1  TGAAATACTACAGAATCTCCCACTCATTCCAGCTCAAGTCACCATTATGT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATACTACAGAATCTCCCACTCATTCCAGCTCAAGTCACCATTATGT  1090

seq1  CTGGGAGTCAATTAACCAGCAAACCAAACAGAAACATACTCGGGTGTTGA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTCAATTAACCAGCAAACCAAACAGAAACATACTCGGGTGTTGA  1140

seq1  GACTATGCATGGAATTC  1159
      |||||||||||||||||
seq2  GACTATGCATGGAATTC  1157