BAC Information

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BAC

Clone NameB6Ng01-261H23
Chromosome10 (Build37)
Map Location 129,361,325 - 129,362,519
singlet/doubletsinglet
Overlap geneOlfr1544-ps1
Upstream geneItga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816
Downstream geneOlfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4, 5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261H23.bB6Ng01-261H23.g
ACCGA066153GA066154
length1,1991,239
definitionB6Ng01-261H23.b B6Ng01-261H23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccttcgcctaggacgtgtcactccctgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacatggagtgaagaacca
ccctcggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacataatactt
ctgtggcccctttgctaaaccctttcatttacaccctaaggaacaaacag
gtgaaagaagctttcaaacatgtgcttcatagattttgttttctacaaaa
caatgagacaatgttcagacatgctgttgaaacatcaggagtaaaataga
cagcaggtctcaattgcattgtttgtgatcagagccatttcacttactga
gtgtttagggcacattaagtttgtcctctccagatgtccacataatcttt
tagttccatatattctcctagctagagagtgtgagtaccttctcaaaacg
aggttagtaaataacatgtgtatagataaatttccttcttgtagtttttt
aatgttctattcagttgaaacttgctagatttaacaaattaattaagcta
ttttggacattgcaaaggacagagaaaagctaattattatataaaataat
tgaagttttcataacaaattaaaactttagtatttgaaaaatgaaaataa
ttttctaagaagaaagattactcatgatgaagcttgaaaagttggccaag
aaaatatttaagattcctatgacaagtataataaattatgccaagtaatt
gcaattttgatgaaaaatattctcttgtaggagcacattaatggagaata
ttaaattttaaaacttatttagaagatatattgctttaaaattatttggt
atcattatcttataccaattggtatattaaattacaatgtctaaattttg
aaggagatggtaacccaagataggtattcttctatttattattaatttgt
atctgatttgtagaaacttctatgtgtaaataaaaatcaaatacaatgct
tcttacaattcttctctgtaagtgttttgtaaataatatatataaggaaa
ctctattattacaaatcatttttaacatgcacacccattataaatacgag
gtacacagtaattatttccctctgcctatttccaattacctggtgtgta
gaattctctctcgctctttggttgtgaagagcatctgcaacagctgttga
caatcatcccaagtaggctgatgagagaacataaggaactccaccagccc
tatgagacattggggatcctgagaaatggggtggttagttttccagttat
aaagatcagcagaggaaaatgaccagtactgaagggtttgaagtttgggc
gggtccagagtctgcccggactctgtgctctgcgactccatgtacccaca
gcagtctgcctctcgacgcccagaggggttcggggttcccctggtggctg
cggttgaggctgtggataagggggaggtagtggactaggccactcaggag
gcttcacagattttggaggagccaatggatttagctggtggctccggttt
gggagaagccttccatttctcttgtaacaggagagttcaaccacaatttt
gagtagcaaaacccaattttaacagtataaacaatccattctctttaaaa
atgaactccaaagacattacttgctataaagtttggctgcctgttcctgc
acacaaacacaagaaggtgtagccaccaatacctcaaaaagacactaccc
taaatcctatcttttataaatcgggtttctaggataagaattacatagaa
aattacccaattcaggcatatctttagagatgtttccatgggttgtctca
tgctgtatgttgtagttctaaattactctaacccagagttaccagtttta
attcaactttttgttaccaatggtgcaaattttaaatcataatctataac
caagaaatctaaaacacatttatacctttgaaactattcagaaacaaaaa
tgaaatgggccgtatattttgcttcatttaaaccaaacaaaattcttaat
tttttcttagctgtatttcagagaggagcaccttgtcacctgatgaatcc
aataatcacaagcacaggagattttttgtagggaaaaaatcagccaatcc
tgtttcccctttaccatagaacctttgaagagctgcttggttcccttaat
agagccagtcattttatattcaagcttctagcagggccttctcaagcaca
cctaggattcctatttaaggtgcagggcctccaagatcaaatttgaatac
tgttagtttagttccattttaatctgatcttaattgtttttaccagaact
tatccctcgagcagatgactgctacgaagtatagacgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_129361325_129362519
seq2: B6Ng01-261H23.b_44_1242 (reverse)

seq1  TACACA----GTAATTGG-AATAGGCAGAGGGAATAATTTACTGTGTACC  45
      ||||||    |||||||| |||||||||||||||  | |||||||||| |
seq2  TACACACCAGGTAATTGGAAATAGGCAGAGGGAAATAATTACTGTGTA-C  49

seq1  CTCGTA-TTAT-ATGGGTGTGCATTGGTTTAAAATGA-TTGT-ATAATAG  91
      |||||| |||| ||||||||||||  ||| ||||||| |||| |||||||
seq2  CTCGTATTTATAATGGGTGTGCAT--GTTAAAAATGATTTGTAATAATAG  97

seq1  AGTTTTCTTATATATATTATTTAC-AAACACTAACAGAGGAAGAATTGGT  140
      ||||| |||||||||||||||||| ||||||| ||||| |||||||| ||
seq2  AGTTTCCTTATATATATTATTTACAAAACACTTACAGA-GAAGAATT-GT  145

seq1  AAG-AGCATTGTATTTGATTTTTATTTAACACATAGAAGTTTCTACAAAT  189
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGAAGCATTGTATTTGATTTTTATTT-ACACATAGAAGTTTCTACAAAT  194

seq1  CAAGATACAAATTAATAATAAATAGAAGAATACCTATCTTGGGTTACCAT  239
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AGATACAAATTAATAATAAATAGAAGAATACCTATCTTGGGTTACCAT  243

seq1  CTCCTTCAAAATTTAGACATTGTAATTTAATATACCAATTGGTATAAGAT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCAAAATTTAGACATTGTAATTTAATATACCAATTGGTATAAGAT  293

seq1  AATGATACCAAATAATTTTAAAGCAATATATCTTCTAAATAAGTTTTAAA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATACCAAATAATTTTAAAGCAATATATCTTCTAAATAAGTTTTAAA  343

seq1  ATTTAATATTCTCCATTAATGTGCTCCTACAAGAGAATATTTTTCATCAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATATTCTCCATTAATGTGCTCCTACAAGAGAATATTTTTCATCAA  393

seq1  AATTGCAATTACTTGGCATAATTTATTATACTTGTCATAGGAATCTTAAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCAATTACTTGGCATAATTTATTATACTTGTCATAGGAATCTTAAA  443

seq1  TATTTTCTTGGCCAACTTTTCAAGCTTCATCATGAGTAATCTTTCTTCTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTGGCCAACTTTTCAAGCTTCATCATGAGTAATCTTTCTTCTT  493

seq1  AGAAAATTATTTTCATTTTTCAAATACTAAAGTTTTAATTTGTTATGAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTATTTTCATTTTTCAAATACTAAAGTTTTAATTTGTTATGAAA  543

seq1  ACTTCAATTATTTTATATAATAATTAGCTTTTCTCTGTCCTTTGCAATGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATTATTTTATATAATAATTAGCTTTTCTCTGTCCTTTGCAATGT  593

seq1  CCAAAATAGCTTAATTAATTTGTTAAATCTAGCAAGTTTCAACTGAATAG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATAGCTTAATTAATTTGTTAAATCTAGCAAGTTTCAACTGAATAG  643

seq1  AACATTAAAAAACTACAAGAAGGAAATTTATCTATACACATGTTATTTAC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAAAAAACTACAAGAAGGAAATTTATCTATACACATGTTATTTAC  693

seq1  TAACCTCGTTTTGAGAAGGTACTCACACTCTCTAGCTAGGAGAATATATG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCGTTTTGAGAAGGTACTCACACTCTCTAGCTAGGAGAATATATG  743

seq1  GAACTAAAAGATTATGTGGACATCTGGAGAGGACAAACTTAATGTGCCCT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAAAGATTATGTGGACATCTGGAGAGGACAAACTTAATGTGCCCT  793

seq1  AAACACTCAGTAAGTGAAATGGCTCTGATCACAAACAATGCAATTGAGAC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTCAGTAAGTGAAATGGCTCTGATCACAAACAATGCAATTGAGAC  843

seq1  CTGCTGTCTATTTTACTCCTGATGTTTCAACAGCATGTCTGAACATTGTC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTCTATTTTACTCCTGATGTTTCAACAGCATGTCTGAACATTGTC  893

seq1  TCATTGTTTTGTAGAAAACAAAATCTATGAAGCACATGTTTGAAAGCTTC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTTTGTAGAAAACAAAATCTATGAAGCACATGTTTGAAAGCTTC  943

seq1  TTTCACCTGTTTGTTCCTTAGGGTGTAAATGAAAGGGTTTAGCAAAGGGG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCTGTTTGTTCCTTAGGGTGTAAATGAAAGGGTTTAGCAAAGGGG  993

seq1  CCACAGAAGTATTATGTTGGGAGCCGCGCCCACATTCGCCGTTACAAGAT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAAGTATTATGTTGGGAGCCGCGCCCACATTCGCCGTTACAAGAT  1043

seq1  GGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGC  1093

seq1  CGAGGGTGGTTCTTCACTCCATGTGCTCTGCCTTCCCCGTGACGTCAACT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGTGGTTCTTCACTCCATGTGCTCTGCCTTCCCCGTGACGTCAACT  1143

seq1  CGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTCCTAGGCGAAGGA  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTCCTAGGCGAAGGA  1193

seq1  GAATTC  1195
      ||||||
seq2  GAATTC  1199