BAC Information

Click to search

BAC

Clone NameB6Ng01-261P16
Chromosome10 (Build37)
Map Location 39,749,301 - 39,856,620
singlet/doubletdoublet
Overlap geneSlc16a10
Upstream geneLama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342
Downstream geneBxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1, Gpr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261P16.bB6Ng01-261P16.g
ACCGA066517GA066518
length1,180131
definitionB6Ng01-261P16.b B6Ng01-261P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,855,434 - 39,856,620)(39,749,301 - 39,749,431)
sequence
gaattcaagttgggacagtttgcctcaatggaaagtgagtgagagacagg
aagggaagagaggatctgagaaaaactgctttttagctcggtttgggcta
gttttctaagccctagaacaacaatgtagttttgtgttacacctaaatta
ctagagatttagattgtcaaagcctttggctctggaagtcaaggttaatc
ctgctgcctttatcctcaggaggtttagttggcaaggaaagctgccagta
caaccaggcttgccactgtcttaatgaagtaagtaataactgctttgttg
agacgattataataatagagagacctggctcatgttcctatacatctatc
cctataatagcagcacacgcttcctacttcattggagggagaaaagctaa
gaaggcttacttgtgccaataactcatctgaaccactggctagtaagtca
tcagaacgcaaaagccattcacagaattggaaaataaaggatgagcatgg
ggctgggcctgatagtgtccgtctgcctggaatcctgggtgcttgggagg
tagagccgaaggaaagttcaaggtcagccaggggtacttagtgagtcacc
acagtaaaagaaaaaaaaaaaggtccggtcatggtcatttccttcccttt
ccttctattttaactgccaagtcaacacaactaaagatgtatcagactta
tgtcagaacaagttctgagataacttttagaataaattgtgggttaagag
cactgactgctcttccagaggtcctgagtttgagccacccacatgatggc
tctgtaatggggatccgatgccctcttctggtgtgtctgaaaacagctac
agtgtactcagatacatagaataaattgtgttctgggcttttgtgtttgt
aacttccgtactggagatgaaatcacacacacacacacacacacacacac
acacacacacacacacacacatatatgtgtgtgtatgttttatatatata
catatacataccccccacatatacatactacatatacatatatcctacac
ctcacccactccaccatatatattcatgcttaggcaaaggcgctattgct
gctttacaggtgccagcctctgagtctgacatgaatttgttgaatcttat
catcattggtaacccagctgcagtttctgg
ctgttattagaaaggaatattgtcagtgtcacacaaagaaacacacagaa
gaaggaggaggagaaaaggagaaagaagaagaagaagaagaaggaggagg
aggaggaggaaaaggagaaggaggaggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_39855434_39856620
seq2: B6Ng01-261P16.b_49_1228 (reverse)

seq1  CCAGAAACTGCAGCCTGGGTTAACAAGGATGAATTTAAAGATACAACAAA  50
      ||||||||||||| |||||||| ||| |||||     ||||| |||||||
seq2  CCAGAAACTGCAG-CTGGGTTACCAATGATGA----TAAGATTCAACAAA  45

seq1  -TCATGTCAAGAACTCAGA-GCTGGCA-CTGT-AAGCAGCAATAGCGCCT  96
       ||||||||   ||||||| ||||||| |||| |||||||||||||||||
seq2  TTCATGTCA--GACTCAGAGGCTGGCACCTGTAAAGCAGCAATAGCGCCT  93

seq1  TTGCCT-AGCATGAATATATATGTGTGTGTGTGTGTGTGTGTGTATGTAT  145
      |||||| |||||||||||||||| ||| | ||| ||| | ||||| | ||
seq2  TTGCCTAAGCATGAATATATATG-GTG-GAGTGGGTGAG-GTGTA-GGAT  139

seq1  ATATGTATATGTATGTATGTATATGT-GTGGGTATGTATATGTATATATA  194
      ||||||||||||| |||||||||||| | |||||||||||||||||||||
seq2  ATATGTATATGTA-GTATGTATATGTGGGGGGTATGTATATGTATATATA  188

seq1  TAAAACATACACACACATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATACACACACATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGT  238

seq1  GTGTGTGTGTGTGTGTGTGGATTTCATCTCCAGTACGGAAGTTACAAACA  294
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGT-GATTTCATCTCCAGTACGGAAGTTACAAACA  287

seq1  CAAAAGCCCAGAACACAATTTATTCTATGTATCTGAGTACACTGTAGCTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCCCAGAACACAATTTATTCTATGTATCTGAGTACACTGTAGCTG  337

seq1  TTTTCAGACACACCAGAAGAGGGCATCGGATCCCCATTACAGAGCCATCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGACACACCAGAAGAGGGCATCGGATCCCCATTACAGAGCCATCA  387

seq1  TGTGGGTGGCTCAAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGGCTCAAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAA  437

seq1  CCCACAATTTATTCTAAAAGTTATCTCAGAACTTGTTCTGACATAAGTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAATTTATTCTAAAAGTTATCTCAGAACTTGTTCTGACATAAGTCT  487

seq1  GATACATCTTTAGTTGTGTTGACTTGGCAGTTAAAATAGAAGGAAAGGGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATCTTTAGTTGTGTTGACTTGGCAGTTAAAATAGAAGGAAAGGGA  537

seq1  AGGAAATGACCATGACCGGACCTTTTTTTTTTTCTTTTACTGTGGTGACT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGACCATGACCGGACCTTTTTTTTTTTCTTTTACTGTGGTGACT  587

seq1  CACTAAGTACCCCTGGCTGACCTTGAACTTTCCTTCGGCTCTACCTCCCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGTACCCCTGGCTGACCTTGAACTTTCCTTCGGCTCTACCTCCCA  637

seq1  AGCACCCAGGATTCCAGGCAGACGGACACTATCAGGCCCAGCCCCATGCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCAGGATTCCAGGCAGACGGACACTATCAGGCCCAGCCCCATGCT  687

seq1  CATCCTTTATTTTCCAATTCTGTGAATGGCTTTTGCGTTCTGATGACTTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTATTTTCCAATTCTGTGAATGGCTTTTGCGTTCTGATGACTTA  737

seq1  CTAGCCAGTGGTTCAGATGAGTTATTGGCACAAGTAAGCCTTCTTAGCTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAGTGGTTCAGATGAGTTATTGGCACAAGTAAGCCTTCTTAGCTT  787

seq1  TTCTCCCTCCAATGAAGTAGGAAGCGTGTGCTGCTATTATAGGGATAGAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTCCAATGAAGTAGGAAGCGTGTGCTGCTATTATAGGGATAGAT  837

seq1  GTATAGGAACATGAGCCAGGTCTCTCTATTATTATAATCGTCTCAACAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGAACATGAGCCAGGTCTCTCTATTATTATAATCGTCTCAACAAA  887

seq1  GCAGTTATTACTTACTTCATTAAGACAGTGGCAAGCCTGGTTGTACTGGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTATTACTTACTTCATTAAGACAGTGGCAAGCCTGGTTGTACTGGC  937

seq1  AGCTTTCCTTGCCAACTAAACCTCCTGAGGATAAAGGCAGCAGGATTAAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCCTTGCCAACTAAACCTCCTGAGGATAAAGGCAGCAGGATTAAC  987

seq1  CTTGACTTCCAGAGCCAAAGGCTTTGACAATCTAAATCTCTAGTAATTTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTTCCAGAGCCAAAGGCTTTGACAATCTAAATCTCTAGTAATTTA  1037

seq1  GGTGTAACACAAAACTACATTGTTGTTCTAGGGCTTAGAAAACTAGCCCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAACACAAAACTACATTGTTGTTCTAGGGCTTAGAAAACTAGCCCA  1087

seq1  AACCGAGCTAAAAAGCAGTTTTTCTCAGATCCTCTCTTCCCTTCCTGTCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAGCTAAAAAGCAGTTTTTCTCAGATCCTCTCTTCCCTTCCTGTCT  1137

seq1  CTCACTCACTTTCCATTGAGGCAAACTGTCCCAACTTGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCACTTTCCATTGAGGCAAACTGTCCCAACTTGAATTC  1180

seq1: chr10_39749301_39749431
seq2: B6Ng01-261P16.g_69_199

seq1  CTGTTATTAGAAAGGAATATTGTCAGTGTCACACAAAGAAACACACAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATTAGAAAGGAATATTGTCAGTGTCACACAAAGAAACACACAGAA  50

seq1  GAAGGAGGAGGAGAAAAGGAGAAAGAAGAAGAAGAAGAAGAAGGAGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGAGGAGAAAAGGAGAAAGAAGAAGAAGAAGAAGAAGGAGGAGG  100

seq1  AGGAGGAGGAAAAGGAGAAGGAGGAGGAAGA  131
      |||||||||||||||||||||||||||||||
seq2  AGGAGGAGGAAAAGGAGAAGGAGGAGGAAGA  131