BAC Information

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BAC

Clone NameB6Ng01-262I01
Chromosome10 (Build37)18 (Build37)
Map Location 88,342,847 - 88,343,13426,998,192 - 26,999,303
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneIgf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20
Downstream geneSlc5a8, Tmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262I01.bB6Ng01-262I01.g
ACCGA066902GA066903
length4901,102
definitionB6Ng01-262I01.b B6Ng01-262I01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,342,847 - 88,343,134)(26,998,192 - 26,999,303)
sequence
aaagataaaaaccttcttagaaatggagccattcatattacttagagtcg
tgtatgtctttatctctataactgtgtaaagaagagcaggtggtaaggat
aaaaaacatcacgattcacatttcttgtttaaagtcacatattcttaaaa
gaaaatattaaataatctaatacctcctttctgttccaacttcctatacc
tccaacttctttttccccttcttcctctttttcttccccttcttcctctt
cttcttctccttcttaaccctcctcttcctttcctcctcctcctcctcct
tcttccttctttccttcctttcttcttcttcttcttccttcttcttcttc
ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt
cttcttcttcttctccttctccttctccttctccttctccttctccttct
ccttctccttctccttctccttctccttctcctcctcctc
gaattcatgagtatctttagaagcacttactaacctggggtttcatatct
gcatttataacaggaaatacaataattatttagtgcatgggaaatcctag
atgctgtgggatctgatggcagtaaaagaaagcatggaggaggttgagaa
tgagcatgtatggtcctctgaaaagcatttcatccactctaatgtgcagg
gatagaggatattcctgatgaggctagcatgtgctgtccctatcactcaa
tggacaacattctctatgggttgaagtatcccaagacaaactatcctgac
aacttggagaaaaccataggctttgtgattagaacagtaatatgtagatt
gctaagattgtaacaactgcgttttggatttctagttattcttacttaca
gtagaggattaaaaagtatcttgcaaatgcatgttctcaatcttctgtgt
ttacaggaacaactgtcttcattcgtgtactcatccatcaggtgtgctat
caatgtaaaaatggcattaatgtaaaatagagttaaaacttagagctaca
acagtccataaaatcatcacctgtatttgtgacaaatgccttgaaagtga
tatagcagagttatagtcattctgtgtgtgagagaatctgaatattgaca
ggtgacatggattgttatctctacctatcctaacacttgctggttttatg
caggctacgaagatgcctagacaaaggtctgcctttcaatattatcagag
ttctgaagaggatgaagttattttgaagtacagcagaaatctaatacctt
tctcaggcatttttgaaatgtgtgtggccatacaaatggagattcaagaa
aggtctctttgaggaaaggttaagtaggaaaaaaaaaagagcaaaaagtt
cagaaatagaaaagcacagagtgtttttgagaaagaaataaataaatcag
agtagaaactgaacaggcacaggttgaagtaaaggcaaatgactgacatt
tcagtctccaggaaatattttatgaatgatactagttaatgtgagcagga
cagagacatgcgcgtatggaccagtatagcctttctgttcagtacaggca
gc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88342847_88343134
seq2: B6Ng01-262I01.b_350_541 (reverse)

seq1  GAGGAGGAGGAGAAGGAGAAGGAGA---AGAAGGAGAAG----AGGAGGA  43
      |||||||||||||||||||||||||   |||||||||||    ||||| |
seq2  GAGGAGGAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAA  50

seq1  GGAGGAGGAGGAGGAGAAGGAGGAGGAGGAAGAAGAATAAGAATAAGAAT  93
      |||| ||||| ||||||||||| |||| ||||||||| ||||| ||||| 
seq2  GGAGAAGGAGAAGGAGAAGGAGAAGGA-GAAGAAGAAGAAGAAGAAGAAG  99

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGGAAGAAGAAGGAAGAAGAAGGAA  143
      |||||||||||||||||||||||||| ||||||||| ||||||||| |||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAA-GAAGAAGAA-GAAGAAGAA-GAA  146

seq1  GAAGAAGGAAGAAGAAGGAGGAGAAAGAGGAGAAGGAAGAAGAAGGAAGA  193
      ||||||||||||||||| || ||||||    ||||||  |||||||||||
seq2  GAAGAAGGAAGAAGAAGAAGAAGAAAG----GAAGGA--AAGAAGGAAGA  190

seq1  AGAAGGAAGAAGAAGAAGAAGGAAGAAGAAGAAGAAGAAAAAGAAGGAAG  243
      ||                                                
seq2  AG------------------------------------------------  192

seq1  AAGGAAGAAGAAGGAAGAAGGAAGAAGAAGAAGAAGAAGAAGAAG  288
                                                   
seq2  ---------------------------------------------  192

seq1: chr18_26998192_26999303
seq2: B6Ng01-262I01.g_67_1168

seq1  GAATTCATGAGTATCTTTAGAAGCACTTACTAACCTGGGGTTTCATATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGTATCTTTAGAAGCACTTACTAACCTGGGGTTTCATATCT  50

seq1  GCATTTATAACAGGAAATACAATAATTATTTAGTGCATGGGAAATCCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATAACAGGAAATACAATAATTATTTAGTGCATGGGAAATCCTAG  100

seq1  ATGCTGTGGGATCTGATGGCAGTAAAAGAAAGCATGGAGGAGGTTGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTGGGATCTGATGGCAGTAAAAGAAAGCATGGAGGAGGTTGAGAA  150

seq1  TGAGCATGTATGGTCCTCTGAAAAGCATTTCATCCACTCTAATGTGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGTATGGTCCTCTGAAAAGCATTTCATCCACTCTAATGTGCAGG  200

seq1  GATAGAGGATATTCCTGATGAGGCTAGCATGTGCTGTCCCTATCACTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGGATATTCCTGATGAGGCTAGCATGTGCTGTCCCTATCACTCAA  250

seq1  TGGACAACATTCTCTATGGGTTGAAGTATCCCAAGACAAACTATCCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAACATTCTCTATGGGTTGAAGTATCCCAAGACAAACTATCCTGAC  300

seq1  AACTTGGAGAAAACCATAGGCTTTGTGATTAGAACAGTAATATGTAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGAGAAAACCATAGGCTTTGTGATTAGAACAGTAATATGTAGATT  350

seq1  GCTAAGATTGTAACAACTGCGTTTTGGATTTCTAGTTATTCTTACTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGATTGTAACAACTGCGTTTTGGATTTCTAGTTATTCTTACTTACA  400

seq1  GTAGAGGATTAAAAAGTATCTTGCAAATGCATGTTCTCAATCTTCTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGATTAAAAAGTATCTTGCAAATGCATGTTCTCAATCTTCTGTGT  450

seq1  TTACAGGAACAACTGTCTTCATTCGTGTACTCATCCATCAGGTGTGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGAACAACTGTCTTCATTCGTGTACTCATCCATCAGGTGTGCTAT  500

seq1  CAATGTAAAAATGGCATTAATGTAAAATAGAGTTAAAACTTAGAGCTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAAAAATGGCATTAATGTAAAATAGAGTTAAAACTTAGAGCTACA  550

seq1  ACAGTCCATAAAATCATCACCTGTATTTGTGACAAATGCCTTGAAAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCATAAAATCATCACCTGTATTTGTGACAAATGCCTTGAAAGTGA  600

seq1  TATAGCAGAGTTATAGTCATTCTGTGTGTGAGAGAATCTGAATATTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAGAGTTATAGTCATTCTGTGTGTGAGAGAATCTGAATATTGACA  650

seq1  GGTGACATGGATTGTTATCTCTACCTATCCTAACACTTGCTGGTTTTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATGGATTGTTATCTCTACCTATCCTAACACTTGCTGGTTTTATG  700

seq1  CAGGCTACGAAGATGCCTAGACAAAGGTCTGCCTTTCAATATTATCAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTACGAAGATGCCTAGACAAAGGTCTGCCTTTCAATATTATCAGAG  750

seq1  TTCTGAAGAGGATGAAGTTATTTTGAAGTACAGCAGAAATCTAATACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGAGGATGAAGTTATTTTGAAGTACAGCAGAAATCTAATACCTT  800

seq1  TCTCAGGCATTTTTGAAATGTGTGTGGCCATACAAATGGAGATTCAAG-A  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTCAGGCATTTTTGAAATGTGTGTGGCCATACAAATGGAGATTCAAGAA  850

seq1  AGGTCTCTTTGAGGAAAAGGTTAAGTAGG-AAAAAAAAAGAGCAAAAAAG  898
      |||||||||||||| |||||||||||||| ||||||||||||| ||||||
seq2  AGGTCTCTTTGAGG-AAAGGTTAAGTAGGAAAAAAAAAAGAGC-AAAAAG  898

seq1  TTCAGAAATAGAAAAGCACAGAGTG-TTTTGAGAAAGAAATAAATAAATC  947
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCAGAAATAGAAAAGCACAGAGTGTTTTTGAGAAAGAAATAAATAAATC  948

seq1  AAGAGTAGAAACTGAACAGGCAACAAGGTGAAGTAAAGGCAAAATGACTG  997
       |||||||||||||||||||| ||| | |||||||||||| |||||||||
seq2  -AGAGTAGAAACTGAACAGGC-ACAGGTTGAAGTAAAGGC-AAATGACTG  995

seq1  ACA-TTCAGTCTCCAGGAAATA-TTTATGAAATGAATACAAAGTTAATGT  1045
      ||| |||||||||||||||||| |||||| |||| ||||  |||||||||
seq2  ACATTTCAGTCTCCAGGAAATATTTTATG-AATG-ATAC-TAGTTAATGT  1042

seq1  GAGGCCAGGACAGAAAGACATGCGCGTATGGACCAGGTATAGGCTTTTCT  1095
      |||  ||||||||  |||||||||||||||||||| ||||| || |||||
seq2  GAG--CAGGACAG--AGACATGCGCGTATGGACCA-GTATA-GCCTTTCT  1086

seq1  GGTCAGTACAGGGCAGC  1112
      | |||||||| ||||||
seq2  GTTCAGTACA-GGCAGC  1102