BAC Information

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BAC

Clone NameB6Ng01-262P01
Chromosome10 (Build37)
Map Location 8,832,094 - 8,935,071
singlet/doubletdoublet
Overlap geneEG666625
Upstream geneUst, Sash1, LOC100039173
Downstream geneLOC666636, E130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262P01.bB6Ng01-262P01.g
ACCGA067230GA067231
length1,138572
definitionB6Ng01-262P01.b B6Ng01-262P01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,933,909 - 8,935,071)(8,832,094 - 8,832,676)
sequence
gaattcttctttcttcgtcgtttcagccctgggattacacgtgatttccc
ctatacccagtgctttacgtagtgctgggcattgagttcttatgcctgca
ataagcatattacccactaagataaccacacagcctctgcagtactgcat
ttaatagaaattaatgagaccttatgatctttttagctaaaatatgatat
tttaattgatgtcttttgcatcattattttgctaaaaaatttaattacac
actatatgttttatggagttattgtgaccatcttattttattcttgctct
actaatgtgattaaaatagatatattgaaatatattgtcatatattaaac
tcttgtgcacacctgagacaagtccaacttgcttttatattcttttatat
tttatattcaagtcttttatattctttgctagagatactttggtatttat
tcaagactgtgatatctatttttgtacaaatgacactaggaatcaagata
cactactggaaaggccaaacataacaaactatgtgagacagatcatcttt
ctagtaacgctctggagtcagccagtgcctagcaatagtgaccagcctgc
tgaattcattaccaggcttgcaaatcaccaccatttcacagccatttgaa
agacaaccagagagagtcctgaatatttttcttaaagatatatccaggga
attgccctcatttcccttcatagttcatttgcccaaagctgattccaaga
cttcaaattattgaagaagcaccagaaaaatatttctttgaaaaaaaaaa
gtggccacaagtttggattacacaaaacagaatctcacagatctcagttg
gtctctaactcattatggagctgagggtgaccttgaacttctgatcttcc
tttgtctaactgcagagtgctggatcacagctttgtacagcacagctggg
tttatgtggtgctgggataaagctagggcactatagcaagtaccttcatc
agtgactatactcttacttctatgtgagtctgatactaaagaagacacag
atatttgagactgaataatagttccatattcacatgcatgaaaatcatgt
actatatttcttgttcccttattctcaatttggaaata

gaattcattcacctagttcataagtagtagttttaagtttgaaagggtaa
tttacttaattgcatatatatgaatctatgtatgtatgtgcatgtctatc
tatctatctatctatctatctatctatctatctatcatctatctatctat
ctatctatctatctatctatctatctatctatctatctatcttttagtga
ctgttctattgttatgaccaaaaaaacttataaaagaaagcatttaattg
aaggcttgcttatagtttgagagggtgagtctatgaccatcatggaaggg
agcatggaattaggcaggcaggtagtaggtaggcaggcagtaggcaggca
gttggcattgagctacatcttgatcagaaagcagcagtcaaagagggggg
aggggaaggggacacatgtccttcaacaaagccacatctcctaatatttt
ataaacagtccactaactgaaatgagtctatgaggttcattcaggtattt
catcaataatcacagatatctacctactctgaatatcagctttatcttta
tcatctgagtagcatagaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_8933909_8935071
seq2: B6Ng01-262P01.b_44_1181 (reverse)

seq1  TATTTCTCAAATGAGAATAAGAGAGAACAAAAGAAAATTATAGTACATGA  50
      ||||||  || |||||||||| ||    | ||||||  ||||||||||||
seq2  TATTTCCAAATTGAGAATAAGGGA----ACAAGAAA--TATAGTACATGA  44

seq1  TTTTTCATGCATGTGAATATTGGAAACTAATTTTATCTCAGTCTCAAATA  100
       |||||||||||||||||||  | |||||   |||| |||||||||||||
seq2  -TTTTCATGCATGTGAATAT--GGAACTA---TTAT-TCAGTCTCAAATA  87

seq1  TTCCTGTGTCTCTTTTAGTATCAGAACTTCACATAGAGGTAAGAGGTATA  150
      |  ||||||||  ||||||||||||   ||||||||| |||||| |||||
seq2  T--CTGTGTCTTCTTTAGTATCAGA--CTCACATAGAAGTAAGA-GTATA  132

seq1  GTTCAACTGATGAAGGTACCTGCTTATAGTGCCCTTAGCTTTATCCCCAG  200
      ||   |||||||||||||| ||| |||||||||| ||||||||| |||||
seq2  GT--CACTGATGAAGGTACTTGC-TATAGTGCCC-TAGCTTTAT-CCCAG  177

seq1  CACCACATAAACCCAGCTGTGCTGTTACAAAGCTGTGATCCAGCACTCTG  250
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CACCACATAAACCCAGCTGTGCTG-TACAAAGCTGTGATCCAGCACTCTG  226

seq1  CAGTTAGACAAAGGAAGATCAGAAGTTCAAGGTCACCCTCAGCTCCATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGACAAAGGAAGATCAGAAGTTCAAGGTCACCCTCAGCTCCATAA  276

seq1  TGAGTTAGAGACCAACCTGAGATCTGTGAGATTCTGTTTTGTGTAATCCA  350
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAGTTAGAGACCAA-CTGAGATCTGTGAGATTCTGTTTTGTGTAATCCA  325

seq1  AACTTGTGGCCACTTTTTTTTTTCAAAGAAATATTTTTCTGGTGCTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTGGCCACTTTTTTTTTTCAAAGAAATATTTTTCTGGTGCTTCTT  375

seq1  CAATAATTTGAAGTCTTGGAATCAGCTTTGGGCAAATGAACTATGAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATTTGAAGTCTTGGAATCAGCTTTGGGCAAATGAACTATGAAGGG  425

seq1  AAATGAGGGCAATTCCCTGGATATATCTTTAAGAAAAATATTCAGGACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGGCAATTCCCTGGATATATCTTTAAGAAAAATATTCAGGACTC  475

seq1  TCTCTGGTTGTCTTTCAAATGGCTGTGAAATGGTGGTGATTTGCAAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGTTGTCTTTCAAATGGCTGTGAAATGGTGGTGATTTGCAAGCCT  525

seq1  GGTAATGAATTCAGCAGGCTGGTCACTATTGCTAGGCACTGGCTGACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGAATTCAGCAGGCTGGTCACTATTGCTAGGCACTGGCTGACTCC  575

seq1  AGAGCGTTACTAGAAAGATGATCTGTCTCACATAGTTTGTTATGTTTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGTTACTAGAAAGATGATCTGTCTCACATAGTTTGTTATGTTTGGC  625

seq1  CTTTCCAGTAGTGTATCTTGATTCCTAGTGTCATTTGTACAAAAATAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGTAGTGTATCTTGATTCCTAGTGTCATTTGTACAAAAATAGAT  675

seq1  ATCACAGTCTTGAATAAATACCAAAGTATCTCTAGCAAAGAATATAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGTCTTGAATAAATACCAAAGTATCTCTAGCAAAGAATATAAAAG  725

seq1  ACTTGAATATAAAATATAAAAGAATATAAAAGCAAGTTGGACTTGTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAATATAAAATATAAAAGAATATAAAAGCAAGTTGGACTTGTCTCA  775

seq1  GGTGTGCACAAGAGTTTAATATATGACAATATATTTCAATATATCTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCACAAGAGTTTAATATATGACAATATATTTCAATATATCTATTT  825

seq1  TAATCACATTAGTAGAGCAAGAATAAAATAAGATGGTCACAATAACTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACATTAGTAGAGCAAGAATAAAATAAGATGGTCACAATAACTCCA  875

seq1  TAAAACATATAGTGTGTAATTAAATTTTTTAGCAAAATAATGATGCAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATATAGTGTGTAATTAAATTTTTTAGCAAAATAATGATGCAAAA  925

seq1  GACATCAATTAAAATATCATATTTTAGCTAAAAAGATCATAAGGTCTCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAATTAAAATATCATATTTTAGCTAAAAAGATCATAAGGTCTCAT  975

seq1  TAATTTCTATTAAATGCAGTACTGCAGAGGCTGTGTGGTTATCTTAGTGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTATTAAATGCAGTACTGCAGAGGCTGTGTGGTTATCTTAGTGG  1025

seq1  GTAATATGCTTATTGCAGGCATAAGAACTCAATGCCCAGCACTACGTAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATGCTTATTGCAGGCATAAGAACTCAATGCCCAGCACTACGTAAA  1075

seq1  GCACTGGGTATAGGGGAAATCACGTGTAATCCCAGGGCTGAAACGACGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGTATAGGGGAAATCACGTGTAATCCCAGGGCTGAAACGACGAA  1125

seq1  GAAAGAAGAATTC  1163
      |||||||||||||
seq2  GAAAGAAGAATTC  1138


seq1: chr10_8832094_8832676
seq2: B6Ng01-262P01.g_65_636

seq1  GAATTCATTCACCTAGTTCATAAGTAGTAGTTTTAAGTTTGAAAGGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACCTAGTTCATAAGTAGTAGTTTTAAGTTTGAAAGGGTAA  50

seq1  TTTACTTAATTGCATATATATGAATCTATGTATGTATGTGCATGTCTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTAATTGCATATATATGAATCTATGTATGTATGTGCATGTCTATC  100

seq1  TATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTAT  150

seq1  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTTTTAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTTTTAGTGA  200

seq1  CTGTTCTATTGTTATGACCAAAAAAACTTATAAAAGAAAGCATTTAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTATTGTTATGACCAAAAAAACTTATAAAAGAAAGCATTTAATTG  250

seq1  AAGGCTTGCTTATAGTTTGAGAGGGTGAGTCTATGACCATCATGGAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGCTTATAGTTTGAGAGGGTGAGTCTATGACCATCATGGAAGGG  300

seq1  AGCATGGAATTAGGCAGGCAGGTAGTAGGTAGGCAGGCAGTAGGCAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGAATTAGGCAGGCAGGTAGTAGGTAGGCAGGCAGTAGGCAGGCA  350

seq1  GTTGGCATTGAGCTACATCTTGATCAGAAAGCAGCAGTCAAAGAGGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCATTGAGCTACATCTTGATCAGAAAGCAGCAGTCAAAGAGGGGGG  400

seq1  AGGGGAAGGGGGACACATGTCCTTCAACAAAGCCACATCTCCTAATATTT  450
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAA-GGGGACACATGTCCTTCAACAAAGCCACATCTCCTAATATTT  449

seq1  TATAAACAGTCCACTAACTGGAAAATGAGTCTATGAGGTTCATTCAGGTA  500
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  TATAAACAGTCCACTAACTG--AAATGAGTCTATGAGGTTCATTCAGGTA  497

seq1  TTTTCATTCAAATAATCACAGATATCCTACCTACTTCTGAATATCAGCCT  550
       ||||||   ||||||||||||||| |||||||| |||||||||||| ||
seq2  -TTTCAT--CAATAATCACAGATAT-CTACCTAC-TCTGAATATCAG-CT  541

seq1  TTATCTTTTATCATTCTGAGTAGCATGGAAGTT  583
      ||||| ||||||| |||||||||||| ||||||
seq2  TTATC-TTTATCA-TCTGAGTAGCATAGAAGTT  572


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