BAC Information

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BAC

Clone NameB6Ng01-263E08
Chromosome10 (Build37)
Map Location 73,827,355 - 73,925,268
singlet/doubletdoublet
Overlap genePcdh15
Upstream geneLOC432471, LOC100039981, LOC623191
Downstream geneEG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263E08.bB6Ng01-263E08.g
ACCGA067482GA067483
length1,156803
definitionB6Ng01-263E08.b B6Ng01-263E08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,827,355 - 73,828,513)(73,924,470 - 73,925,268)
sequence
gaattcctgtgatccaacacaatctcatctttaacaaaacattacaggcg
atcctggaaagcttgcagagagcaaggacactgtaccttctaggtacttg
agcaaaagacattttgaatttacctttgttgtgtgtaaaatgccttgttt
tacaggttttgtctgtataggttgaaggcacaacatttcccagtgttcta
gggacactgctggttctatctttgtgcacgctgatcttcacaaatgacct
gaccgacttatacctgtaaatgagagtgtgagatctcatttgctttatgc
caggagactattgtgagattcaaagaagaatgtacattgtctagtgtagg
tggcataaggggttttgttgttcagttggtttggggtttgtttgttttat
taagcatagtttaaaccattttgctcctttaagagttagctgaaaagcag
aactaatttgaaatctgggttgaaggtagaacacttacagaggcaacttc
ttctgcctgagatgtctgcggaactctccaatcccgtctttaataatctt
gctgtgttgtgttttctgtcttaaataaatctcagagtgtgtttgaacat
cttgagctgtttacagcttcctgtactgccagatcttgctgattaaagct
taaggatataaatagcattatttccctgagatttcaatagatggaaagaa
acaaaatcggtatttcccaagaaacactcaacaagcagctatcaggagtc
ggctttcccgtgaagttcacgtggcccccattgacctggagatgagcctg
tggtgttcccatgctaattggctaagattgtagctgagaaaataatttaa
gttttaaagaaatcagagattatttacatgagaagattttgatttactca
agacacctaaagaattcaattacacacctcttgttcttatgcaaatatat
tttttaaaatatagatccaaagaaatgcagtagtttgaaaaccataaagc
caaatatctctgcctctgtttcccccacacacacacacacacacacacac
acacatgtgacccacttgcacagcatgtgaccactcacagggaagaggca
aaggttctttgtttcttagtgctgcagttaaagaaccaacctcagagaaa
ggaagc

gaattcctgtcttgacttcctttgatggtcaactgtgaggtagaatgata
agctgaataaaccctttcctccccagcttgcttttagtcatgatgcttca
taactgcactagtaagcctaagacacctagattcaataggggatcgtaga
atttctgagtttgtaatctctttttgctgcaacaaaatatctgagaaaac
tgaaggaggattgatttgagttacagttctgagtttgaagaacattacag
accagagctttgcacatcatggtggccagaaaacaaggaaaagagaggcc
ttaatttaaacaaagacactccctattttattcttctaaaatctgttagt
aaattaatcccttcatgaggtcggtgtcctttggaaccaatccacaagat
ccctgattctcaatattctcacactatatgccaaaagaacttctgaggaa
cactgaaactccaaccaagatactacaggcttacattcattatcatggtt
taatacacacacacacacacacacacacacacacacacacacacacacac
acgtgtgcacgcatgcgtgtgtgtatgtgtatatgtatatatatgtatgt
atatgggtattgaaagtcgaccacgactgtcagtgggatattttagggaa
gactgaattgtcactaaaaacaagaacagctgggatgtggtgggcacaca
tttttaatcgcagcactcaggagacagaggcacaaggatcctctgtgaag
ttaaggccagccttgatctatggaaccagctccagacagaagagaaatcc
tgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_73827355_73828513
seq2: B6Ng01-263E08.b_45_1200

seq1  GAATTCCTGTGATCCAACACAATCTCATCTTTAACAAAACATTACAGGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGATCCAACACAATCTCATCTTTAACAAAACATTACAGGCG  50

seq1  ATCCTGGAAAGCTTGCAGAGAGCAAGGACACTGTACCTTCTAGGTACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGAAAGCTTGCAGAGAGCAAGGACACTGTACCTTCTAGGTACTTG  100

seq1  AGCAAAAGACATTTTGAATTTACCTTTGTTGTGTGTAAAATGCCTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAGACATTTTGAATTTACCTTTGTTGTGTGTAAAATGCCTTGTTT  150

seq1  TACAGGTTTTGTCTGTATAGGTTGAAGGCACAACATTTCCCAGTGTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTTTTGTCTGTATAGGTTGAAGGCACAACATTTCCCAGTGTTCTA  200

seq1  GGGACACTGCTGGTTCTATCTTTGTGCACGCTGATCTTCACAAATGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACTGCTGGTTCTATCTTTGTGCACGCTGATCTTCACAAATGACCT  250

seq1  GACCGACTTATACCTGTAAATGAGAGTGTGAGATCTCATTTGCTTTATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGACTTATACCTGTAAATGAGAGTGTGAGATCTCATTTGCTTTATGC  300

seq1  CAGGAGACTATTGTGAGATTCAAAGAAGAATGTACATTGTCTAGTGTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGACTATTGTGAGATTCAAAGAAGAATGTACATTGTCTAGTGTAGG  350

seq1  TGGCATAAGGGGTTTTGTTGTTCAGTTGGTTTGGGGTTTGTTTGTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAAGGGGTTTTGTTGTTCAGTTGGTTTGGGGTTTGTTTGTTTTAT  400

seq1  TAAGCATAGTTTAAACCATTTTGCTCCTTTAAGAGTTAGCTGAAAAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATAGTTTAAACCATTTTGCTCCTTTAAGAGTTAGCTGAAAAGCAG  450

seq1  AACTAATTTGAAATCTGGGTTGAAGGTAGAACACTTACAGAGGCAACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTTGAAATCTGGGTTGAAGGTAGAACACTTACAGAGGCAACTTC  500

seq1  TTCTGCCTGAGATGTCTGCGGAACTCTCCAATCCCGTCTTTAATAATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTGAGATGTCTGCGGAACTCTCCAATCCCGTCTTTAATAATCTT  550

seq1  GCTGTGTTGTGTTTTCTGTCTTAAATAAATCTCAGAGTGTGTTTGAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTTGTGTTTTCTGTCTTAAATAAATCTCAGAGTGTGTTTGAACAT  600

seq1  CTTGAGCTGTTTACAGCTTCCTGTACTGCCAGATCTTGCTGATTAAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCTGTTTACAGCTTCCTGTACTGCCAGATCTTGCTGATTAAAGCT  650

seq1  TAAGGATATAAATAGCATTATTTCCCTGAGATTTCAATAGATGGAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATATAAATAGCATTATTTCCCTGAGATTTCAATAGATGGAAAGAA  700

seq1  ACAAAATCGGTATTTCCCAAGAAACACTCAACAAGCAGCTATCAGGAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCGGTATTTCCCAAGAAACACTCAACAAGCAGCTATCAGGAGTC  750

seq1  GGCTTTCCCGTGAAGTTCACGTGGCCCCCATTGACCTGGAGATGAGCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCCCGTGAAGTTCACGTGGCCCCCATTGACCTGGAGATGAGCCTG  800

seq1  TGGTGTTCCCATGCTAATTGGCTAAGATTGTAGCTGAGAAAATAATTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTCCCATGCTAATTGGCTAAGATTGTAGCTGAGAAAATAATTTAA  850

seq1  GTTTTAAAGAAATCAGAGATTATTTACATGAGAAGATTTTGATTTACTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAGAAATCAGAGATTATTTACATGAGAAGATTTTGATTTACTCA  900

seq1  AGACACCTAAAGAATTCAATTACACACCTCTTGTTCTTATTGCAAATATA  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGACACCTAAAGAATTCAATTACACACCTCTTGTTCTTA-TGCAAATATA  949

seq1  -TTTTTAAAATATAGATCCAAAGAAATGCAGTAGTTTGAAAAACCATAAA  999
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTTTTAAAATATAGATCCAAAGAAATGCAGTAGTTTG-AAAACCATAAA  998

seq1  GCCAAATATCTCTGCCTCTGTTTCCCCCAACACACACACACACACACACA  1049
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCCAAATATCTCTGCCTCTGTTTCCCCC-ACACACACACACACACACACA  1047

seq1  CACACACATGTGACCCACCTGCACAGCATGTGACCCACTCACA-GGAAGG  1098
      |||||||||||||||||| |||||||||||||| ||||||||| ||||| 
seq2  CACACACATGTGACCCACTTGCACAGCATGTGA-CCACTCACAGGGAAGA  1096

seq1  AGCAGA-GTTCTTTGTTTTCTAAGTGCTGCAGTTTAAGGAAACAAACCTC  1147
       ||| | |||||||| ||||| |||||||||||| |||  ||| ||||||
seq2  GGCAAAGGTTCTTTG-TTTCTTAGTGCTGCAGTTAAAG--AACCAACCTC  1143

seq1  AGAG-AAGGAAGC  1159
      |||| ||||||||
seq2  AGAGAAAGGAAGC  1156


seq1: chr10_73924470_73925268
seq2: B6Ng01-263E08.g_65_867 (reverse)

seq1  ACAGGATTTCTCTGTCTGTCTGGAGCTGGTTCCATCGATC-AGGCTGGCC  49
      ||||||||||||| ||||||||||||||||||||| |||| |||||||||
seq2  ACAGGATTTCTCT-TCTGTCTGGAGCTGGTTCCATAGATCAAGGCTGGCC  49

seq1  TCTAAC-TCACAGA-GATCCTTGTGCCTCTGTCTCCTGAGTGCTGCGATT  97
      | |||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  T-TAACTTCACAGAGGATCCTTGTGCCTCTGTCTCCTGAGTGCTGCGATT  98

seq1  AAAAATGTGTG-CCACCACAT-CCAGCTGTT-TTGTTTTTAGTGAAAATT  144
      ||||||||||| ||||||||| ||||||||| ||||||||||||| ||||
seq2  AAAAATGTGTGCCCACCACATCCCAGCTGTTCTTGTTTTTAGTGACAATT  148

seq1  CAGTCTTCCCTAAAATATTCCAATGAATGTTGTGGTCGACTTTCAATACC  194
      |||||||||||||||||| ||| |||  || |||||||||||||||||||
seq2  CAGTCTTCCCTAAAATATCCCACTGACAGTCGTGGTCGACTTTCAATACC  198

seq1  CATATACATACATATATATACATATACACATACACACACGCATGCGTGCA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACATACATATATATACATATACACATACACACACGCATGCGTGCA  248

seq1  CACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  298

seq1  TATTAAACCATGATAATGAATGTAAGCCTGTAGTATCTTGGTTGGAGTTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAACCATGATAATGAATGTAAGCCTGTAGTATCTTGGTTGGAGTTT  348

seq1  CAGTGTTCCTCAGAAGTTCTTTTGGCATATAGTGTGAGAATATTGAGAAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTCCTCAGAAGTTCTTTTGGCATATAGTGTGAGAATATTGAGAAT  398

seq1  CAGGGATCTTGTGGATTGGTTCCAAAGGACACCGACCTCATGAAGGGATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATCTTGTGGATTGGTTCCAAAGGACACCGACCTCATGAAGGGATT  448

seq1  AATTTACTAACAGATTTTAGAAGAATAAAATAGGGAGTGTCTTTGTTTAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACTAACAGATTTTAGAAGAATAAAATAGGGAGTGTCTTTGTTTAA  498

seq1  ATTAAGGCCTCTCTTTTCCTTGTTTTCTGGCCACCATGATGTGCAAAGCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGCCTCTCTTTTCCTTGTTTTCTGGCCACCATGATGTGCAAAGCT  548

seq1  CTGGTCTGTAATGTTCTTCAAACTCAGAACTGTAACTCAAATCAATCCTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTGTAATGTTCTTCAAACTCAGAACTGTAACTCAAATCAATCCTC  598

seq1  CTTCAGTTTTCTCAGATATTTTGTTGCAGCAAAAAGAGATTACAAACTCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTTTCTCAGATATTTTGTTGCAGCAAAAAGAGATTACAAACTCA  648

seq1  GAAATTCTACGATCCCCTATTGAATCTAGGTGTCTTAGGCTTACTAGTGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTACGATCCCCTATTGAATCTAGGTGTCTTAGGCTTACTAGTGC  698

seq1  AGTTATGAAGCATCATGACTAAAAGCAAGCTGGGGAGGAAAGGGTTTATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGAAGCATCATGACTAAAAGCAAGCTGGGGAGGAAAGGGTTTATT  748

seq1  CAGCTTATCATTCTACCTCACAGTTGACCATCAAAGGAAGTCAAGACAGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTATCATTCTACCTCACAGTTGACCATCAAAGGAAGTCAAGACAGG  798

seq1  AATTC  799
      |||||
seq2  AATTC  803


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