BAC Information

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BAC

Clone NameB6Ng01-263I18
Chromosome10 (Build37)
Map Location 127,578,144 - 127,688,744
singlet/doubletdoublet
Overlap geneRbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless
Upstream geneLOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085
Downstream geneApon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263I18.bB6Ng01-263I18.g
ACCGA067688GA067689
length1,1391,126
definitionB6Ng01-263I18.b B6Ng01-263I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,578,144 - 127,579,257)(127,687,629 - 127,688,744)
sequence
gaattccaagtgatccctctcatctgagctacagatcaggccttgaatag
tttgttgttttggtgtttgtttgtttgtttgtttgtttcaagagaagagt
ttttctgtgtaacagagccttggctggcctggaacgtgatctatagacca
ggctggccctgaacacatagagatcctcctgcatctgccctctcaaccac
tgcttgacttccactgttgattttgagacagactcttaaaaaaaacaaaa
gcaaaaacaaaaacaaaaatcaacttgggctgactgtaaacagtctatgt
acaactttccaagcacaagggttacaggtgtgtacaaactttgaggggtt
caccttcaacttctgattctcctgcctccacaacccaagtgctaaaatgt
cattagatacccattttattccatgctgtagatcaaattttggggggggg
ggtcccatgcctactaagcaagcactctacccacagagctacattaccac
cctgtcttgagcttggactcatgatgtagttagtgctggctagcctggaa
ctcacattctttcagatatggccactttgaacttgcagagattttccgcc
actcaaaacaaaaagtctttgcaacaatgtttcacatgtatttattttgt
atgtgttagcattctctctaagatccatcccacagttacctggcaacagc
cagggatgctccaccccacagtacctggcaacacccagggatgcctgatg
agctgcttgctccctctttctcatgttctgtcctctcctctctctcctcc
ctcccctccatctctccacgtgctcatgggcagcctctttctcctctact
tcttctctttctctttctcctctacttctcttctcttctctctgcctttt
ctctgcctctactaccctcctaactccccccttcccattggccttaataa
actctattactaataccatcatggtgggttgcttccctcaggggggaagg
gatgccctcagcatggggccccaccaaggttaccctcctccccccccata
cctggactatacttccataggaacaatactcccccctcctcccacttcgt
ggtcttttataaaaatcatacagtagtgtgtgtgtagtc
gaattctccagaaggtttcctacaggtacacagcaggtgagatcgctgcc
agggaggaccggcctttctggccactcttctgctctatcagtcattgagt
aagcatgacccccccccccaaccaggaatgacccacaggagttgtgaatt
ggacttacacccagcacctagctcagtgctacaccaggtcacattcactg
tgaatacagctattagcaatgaatacagggaaggatctgggccatgtaaa
aagttagcctgtgagatccacactcagagtcaatgggggcgcgaggggag
cggccgggcaagatgttaaagcgccactggactgggcgcccgagcaacta
ttcccacttcctgggtcagacaggcagtaagattgcctctctgtgcaagt
tctgagctgacccttgaaggctggttgagggtcaagaggaagaaggtatg
tgggggtgtgcacatgtctgtgtgtgtggaccttggatgtgtggctgcag
ccttccaataggactgggcagatcaactggtcatgcatgaacagacctgc
catgtgcagggtggaaagcagtcggggttggctgtggtgtaaagcagatg
tggctggatggccacgcaaagacagacatgcctccaggaggctgcggcac
acagaaccatcagtgctgcagacagacaagggggcagtgtagaacaccat
ttagggaaggggaggctaaaggggagagagacttgagtaagagacctgac
ttggggaaccttgggaggcaaaggcaaggcagcagggaggatctgggcaa
caacacggtgtctctctgaggaggaccagagcgagcttccagggctgaca
cggtcccgctcgctcgctctgacactcacctgccctgagctgggcggccg
gatccctagcttgcgtagcagatgctgaaactgttcgttctccattgctt
cctcattttcttctgtcagaaggcaccagaaggattgccttgggaaacag
ccttgcaacacgggaacaatgtggcacaagtacctgcttctggatccaac
ccaggccaagcacccagtgttcagtgcttaccatctctctctcggtcatt
tgcctgtctcggatctagggaactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_127578144_127579257
seq2: B6Ng01-263I18.b_46_1184

seq1  GAATTCCAAGTGATCCCTCTCATCTGAGCTACAGATCAGGCCTTGAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTGATCCCTCTCATCTGAGCTACAGATCAGGCCTTGAATAG  50

seq1  TTTGTTGTTTTGGTGTTTGTTTGTTTGTTTGTTTGTTTCAAGAGAAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTTTGGTGTTTGTTTGTTTGTTTGTTTGTTTCAAGAGAAGAGT  100

seq1  TTTTCTGTGTAACAGAGCCTTGGCTGGCCTGGAACGTGATCTATAGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTGTAACAGAGCCTTGGCTGGCCTGGAACGTGATCTATAGACCA  150

seq1  GGCTGGCCCTGAACACATAGAGATCCTCCTGCATCTGCCCTCTCAACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCCTGAACACATAGAGATCCTCCTGCATCTGCCCTCTCAACCAC  200

seq1  TGCTTGACTTCCACTGTTGATTTTGAGACAGACTCTTAAAAAAAACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGACTTCCACTGTTGATTTTGAGACAGACTCTTAAAAAAAACAAAA  250

seq1  GCAAAAACAAAAACAAAAATCAACTTGGGCTGACTGTAAACAGTCTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAACAAAAACAAAAATCAACTTGGGCTGACTGTAAACAGTCTATGT  300

seq1  ACAACTTTCCAAGCACAAGGGTTACAGGTGTGTACAAACTTTGAGGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTCCAAGCACAAGGGTTACAGGTGTGTACAAACTTTGAGGGGTT  350

seq1  CACCTTCAACTTCTGATTCTCCTGCCTCCACAACCCAAGTGCTAAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCAACTTCTGATTCTCCTGCCTCCACAACCCAAGTGCTAAAATGT  400

seq1  CATTAGATACCCATTTTATTCCATGCTGTAGATCAAATTTTGGGGGGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGATACCCATTTTATTCCATGCTGTAGATCAAATTTTGGGGGGGGG  450

seq1  GGTCCCATGCCTACTAAGCAAGCACTCTACCCACAGAGCTACATTACCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCATGCCTACTAAGCAAGCACTCTACCCACAGAGCTACATTACCAC  500

seq1  CCTGTCTTGAGCTTGGACTCATGATGTAGTTAGTGCTGGCTAGCCTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTGAGCTTGGACTCATGATGTAGTTAGTGCTGGCTAGCCTGGAA  550

seq1  CTCACATTCTTTCAGATATGGCCACTTTGAACTTGCAGAGATTTTCCGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATTCTTTCAGATATGGCCACTTTGAACTTGCAGAGATTTTCCGCC  600

seq1  ACTCAAAACAAAAAGTCTTTGCAACAATGTTTCACATGTATTTATTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAACAAAAAGTCTTTGCAACAATGTTTCACATGTATTTATTTTGT  650

seq1  ATGTGTTAGCATTCTCTCTAAGATCCATCCCACAGTTACCTGGCAACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTAGCATTCTCTCTAAGATCCATCCCACAGTTACCTGGCAACAGC  700

seq1  CAGGGATGCTCCACCCCACAGTACCTGGCAACACCCAGGGATGCCTGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATGCTCCACCCCACAGTACCTGGCAACACCCAGGGATGCCTGATG  750

seq1  AGCTGCTTGCTCCCTCTTGCTCATGTTCTGTCCTCTCCTCTCTCTCCTCC  800
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGCTGCTTGCTCCCTCTTTCTCATGTTCTGTCCTCTCCTCTCTCTCCTCC  800

seq1  CTCCCCTCCATCTCTCCACGTGCTCAT-GGCAGCCTC-TTCTCCTCTACT  848
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  CTCCCCTCCATCTCTCCACGTGCTCATGGGCAGCCTCTTTCTCCTCTACT  850

seq1  TCTTCTC-TTCTC-TTCTCCTCTACTTCTCTTCTCTTCTCTCTGCC-TTT  895
      ||||||| ||||| |||||||||||||||||||||||||||||||| |||
seq2  TCTTCTCTTTCTCTTTCTCCTCTACTTCTCTTCTCTTCTCTCTGCCTTTT  900

seq1  CTCTGCCTCTACTACCCTCTTAACTCCCCCC-TCCCA-TGCCCTTAATAA  943
      ||||||||||||||||||| ||||||||||| ||||| || |||||||||
seq2  CTCTGCCTCTACTACCCTCCTAACTCCCCCCTTCCCATTGGCCTTAATAA  950

seq1  ACTCTATTACT-ATACCATCATG--TGGTTGC-TCCCTCA-GGGGGAAGG  988
      ||||||||||| |||||||||||   |||||| ||||||| |||||||||
seq2  ACTCTATTACTAATACCATCATGGTGGGTTGCTTCCCTCAGGGGGGAAGG  1000

seq1  GATG-CCTCAGCATGGG--CCCACCAAGG-TACCC-CCT-CCCCCCCATA  1032
      |||| ||||||||||||  |||||||||| ||||| ||| ||||||||||
seq2  GATGCCCTCAGCATGGGGCCCCACCAAGGTTACCCTCCTCCCCCCCCATA  1050

seq1  CCT-GACTATACCTCCATA-GAACATAACTCCCCCC----CCCACTTTCT  1076
      ||| |||||||| |||||| |||||  |||||||||    ||||| ||| 
seq2  CCTGGACTATACTTCCATAGGAACAATACTCCCCCCTCCTCCCAC-TTCG  1099

seq1  TTGTCTTTTTATAAAAA-CAT-CAGTA-TGTGTGTGTAGTC  1114
      | ||| ||||||||||| ||| ||||| |||||||||||||
seq2  TGGTC-TTTTATAAAAATCATACAGTAGTGTGTGTGTAGTC  1139

seq1: chr10_127687629_127688744
seq2: B6Ng01-263I18.g_68_1193 (reverse)

seq1  AGAGCTCCCT-GATCCGAG-CA-GCAAATGACCGAGAAGAG-GATGGTAA  46
      |||| ||||| |||||||| || ||||||||||||| |||| ||||||||
seq2  AGAGTTCCCTAGATCCGAGACAGGCAAATGACCGAG-AGAGAGATGGTAA  49

seq1  GCACTGGACACTGGGTGGCCTGGGCCT-GGTGTGATCCAG-AGCA-GTTC  93
      |||||| ||||||||||  || ||||| |||  ||||||| |||| || |
seq2  GCACTGAACACTGGGTG--CTTGGCCTGGGTTGGATCCAGAAGCAGGTAC  97

seq1  CTCTGCCACATTGTCACCGTGTCTGC-AGGCTGCT--CCCAGGCAATCCC  140
       | |||||||||||  |||||| ||| |||||| |  || ||||||||| 
seq2  TTGTGCCACATTGTTCCCGTGT-TGCAAGGCTGTTTCCCAAGGCAATCCT  146

seq1  TCTGGTGCC-TCTGACAGAGGAAAATGAGGAAGCAATGGAGAACGAACAG  189
      ||||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  TCTGGTGCCTTCTGACAGAAGAAAATGAGGAAGCAATGGAGAACGAACAG  196

seq1  TTTCAGCATCTGCTACGCAAGCTAGGGATCCGGCCGCCCAGCTCAGGGCA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCATCTGCTACGCAAGCTAGGGATCCGGCCGCCCAGCTCAGGGCA  246

seq1  GGTGAGTGTCAGAGCGAGCGAGCGGGACCGTGTCAGCCCTGG-AGCTCGC  288
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGTGAGTGTCAGAGCGAGCGAGCGGGACCGTGTCAGCCCTGGAAGCTCGC  296

seq1  TCTGGTCCTCCTCAGAG-GACACCGTGTTGTTGCCCAGATCCTCCCTGCT  337
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTGGTCCTCCTCAGAGAGACACCGTGTTGTTGCCCAGATCCTCCCTGCT  346

seq1  GCCTTGCCTTTGCCTCCCAAGGTT-CCCAAGTCAGGTCTCTTACTCAAGT  386
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCCTTGCCTTTGCCTCCCAAGGTTCCCCAAGTCAGGTCTCTTACTCAAGT  396

seq1  CTCTCTCCCCTTTAGCCTCCCCTTCCCTAAATGGTGTTCTACACTGCCCC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCCCTTTAGCCTCCCCTTCCCTAAATGGTGTTCTACACTGCCCC  446

seq1  CTTGTCTGTCTGCAGCACTGATGGTTCTGTGTGCCGCAGCCTCCTGGAGG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGTCTGCAGCACTGATGGTTCTGTGTGCCGCAGCCTCCTGGAGG  496

seq1  CATGTCTGTCTTTGCGTGGCCATCCAGCCACATCTGCTTTACACCACAGC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTGTCTTTGCGTGGCCATCCAGCCACATCTGCTTTACACCACAGC  546

seq1  CAACCCCGACTGCTTTCCACCCTGCACATGGCAGGTCTGTTCATGCATGA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCGACTGCTTTCCACCCTGCACATGGCAGGTCTGTTCATGCATGA  596

seq1  CCAGTTGATCTGCCCAGTCCTATTGGAAGGCTGCAGCCACACATCCAAGG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGATCTGCCCAGTCCTATTGGAAGGCTGCAGCCACACATCCAAGG  646

seq1  TCCACACACACAGACATGTGCACACCCCCACATACCTTCTTCCTCTTGAC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACACACAGACATGTGCACACCCCCACATACCTTCTTCCTCTTGAC  696

seq1  CCTCAACCAGCCTTCAAGGGTCAGCTCAGAACTTGCACAGAGAGGCAATC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACCAGCCTTCAAGGGTCAGCTCAGAACTTGCACAGAGAGGCAATC  746

seq1  TTACTGCCTGTCTGACCCAGGAAGTGGGAATAGTTGCTCGGGCGCCCAGT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCCTGTCTGACCCAGGAAGTGGGAATAGTTGCTCGGGCGCCCAGT  796

seq1  CCAGTGGCGCTTTAACATCTTGCCCGGCCGCTCCCCTCGCGCCCCCATTG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGCGCTTTAACATCTTGCCCGGCCGCTCCCCTCGCGCCCCCATTG  846

seq1  ACTCTGAGTGTGGATCTCACAGGCTAACTTTTTACATGGCCCAGATCCTT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGTGTGGATCTCACAGGCTAACTTTTTACATGGCCCAGATCCTT  896

seq1  CCCTGTATTCATTGCTAATAGCTGTATTCACAGTGAATGTGACCTGGTGT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTATTCATTGCTAATAGCTGTATTCACAGTGAATGTGACCTGGTGT  946

seq1  AGCACTGAGCTAGGTGCTGGGTGTAAGTCCAATTCACAACTCCTGTGGGT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGAGCTAGGTGCTGGGTGTAAGTCCAATTCACAACTCCTGTGGGT  996

seq1  CATTCCTGGTTGGGGGGGGGGGTCATGCTTACTCAATGACTGATAGAGCA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGGTTGGGGGGGGGGGTCATGCTTACTCAATGACTGATAGAGCA  1046

seq1  GAAGAGTGGCCAGAAAGGCCGGTCCTCCCTGGCAGCGATCTCACCTGCTG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTGGCCAGAAAGGCCGGTCCTCCCTGGCAGCGATCTCACCTGCTG  1096

seq1  TGTACCTGTAGGAAACCTTCTGGAGAATTC  1116
      ||||||||||||||||||||||||||||||
seq2  TGTACCTGTAGGAAACCTTCTGGAGAATTC  1126