BAC Information

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BAC

Clone NameB6Ng01-264A01
Chromosome10 (Build37)
Map Location 80,663,212 - 80,854,916
singlet/doubletdoublet
Overlap geneItgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh
Upstream geneMum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3
Downstream gene2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264A01.bB6Ng01-264A01.g
ACCGA068024GA068025
length6361,153
definitionB6Ng01-264A01.b B6Ng01-264A01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,663,212 - 80,663,847)(80,853,753 - 80,854,916)
sequence
gaattcagagcgggaagcacccacagggcccagtggggcagttagggcag
gggcactatgcttaccgtcccactgtttaaagccgtcctctccgactgct
atttggtcctggggctgaaacacaggaccccaaggtttgggctcagacct
gtgccagcccagcccaccttgccactctaggatggccccacagcgaggtg
cggtggtctatccatcatcacctgtcactcctccctttgaacccattgca
gagaagggaaagcagaagtctaagaggtcgtgggtaaaaacatcccagca
tgccacagtgaggccagcaccccctccatcagtctgacagggttcctcaa
cccttgggcacaagcagggctaatgagaacgccttgccccgtattcccca
cacctctgcaccctagacagccaccttgaagaagtcatcctgatggatca
cgcagcagttgggcagcgccttgaggaggctgttggtcagggtggtcttc
ccaccgttggtcaccctggaagggcagcgtgtgtgaggcagtggggagat
gtcagcgcccactcccaagcacctaacaggactcgagtcaccatggagtt
acagtcaggcccattcgggtggacaggtggtgtgtg
gaattccaggtcatcctcatctacataccaagcttgaggcaggtctcaca
cagtttggaaaaagggtttggcttttttttcctgattttggttttttgag
acacggtaaccctggctgtcctggaacctaactttgtagactctcgaact
cagagagattctcctgcctctgcctcctgagtgttgggattaaagatgtc
accaggaacccaaccaggcatgcctatctatattaagctcctactgtata
ctcatggagtcctgagctgagagatctgagcccaggtgggatgtcaggag
cccagactgacatgcccaccagctgaggtgggggaagccctgtggagagg
acctaccacacatggttccttatgctccctagtccaggctggcctggaat
gtgccatcctcctgcctcagcctcttgaatgctgaggatgacagcttggt
tactccgtgctgtgtgtgacaataagctgagggaccttcacccagacatt
tctcagtggcctgcctcagtttccagtctgtgctactgggctcatcgaca
gcacccaggagggttttgtgagaacgtgtgggacagggctgagacaaaaa
ggtcatggcacttggatagtcagataggcttttaatttatatgtgaattt
ggcctcactcttttctcctctcagcaaacactgtgtaaggaattatccat
aggaaaaaatgttgcaggtgatggctctgagttccaggacagccagggct
gttacgcagagaaaccctgtcttgaaaaaccaaaagagaaagaaagaggg
aaagaaaggaaggaaggaagaaaggaagctgtcaggccctcgggctggca
cagccttggaggagaccctgggctctcctcagtatcacagaagcccagat
ctgtcatccagcgtttcaggagatggtgactgggaggatcaggagttcaa
ggtgttcctctgctatgtatcaagttcaggcttgcctaggctaacaatgg
agaacttgtttccaggtcaataagtgtaagtgagtctgcatcgagcactc
caggccagaaggggagttgagttccagcctggccaacctatgttgttcac
attaccaagtgtcactgagcgatgaactgccaggcccacagggttcacac
atg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_80663212_80663847
seq2: B6Ng01-264A01.b_45_680

seq1  GAATTCAGAGCGGGAAGCACCCACAGGGCCCAGTGGGGCAGTTAGGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCGGGAAGCACCCACAGGGCCCAGTGGGGCAGTTAGGGCAG  50

seq1  GGGCACTATGCTTACCGTCCCACTGTTTAAAGCCGTCCTCTCCGACTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTATGCTTACCGTCCCACTGTTTAAAGCCGTCCTCTCCGACTGCT  100

seq1  ATTTGGTCCTGGGGCTGAAACACAGGACCCCAAGGTTTGGGCTCAGACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTCCTGGGGCTGAAACACAGGACCCCAAGGTTTGGGCTCAGACCT  150

seq1  GTGCCAGCCCAGCCCACCTTGCCACTCTAGGATGGCCCCACAGCGAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGCCCAGCCCACCTTGCCACTCTAGGATGGCCCCACAGCGAGGTG  200

seq1  CGGTGGTCTATCCATCATCACCTGTCACTCCTCCCTTTGAACCCATTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGTCTATCCATCATCACCTGTCACTCCTCCCTTTGAACCCATTGCA  250

seq1  GAGAAGGGAAAGCAGAAGTCTAAGAGGTCGTGGGTAAAAACATCCCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGAAAGCAGAAGTCTAAGAGGTCGTGGGTAAAAACATCCCAGCA  300

seq1  TGCCACAGTGAGGCCAGCACCCCCTCCATCAGTCTGACAGGGTTCCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAGTGAGGCCAGCACCCCCTCCATCAGTCTGACAGGGTTCCTCAA  350

seq1  CCCTTGGGCACAAGCAGGGCTAATGAGAACGCCTTGCCCCGTATTCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGGCACAAGCAGGGCTAATGAGAACGCCTTGCCCCGTATTCCCCA  400

seq1  CACCTCTGCACCCTAGACAGCCACCTTGAAGAAGTCATCCTGATGGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGCACCCTAGACAGCCACCTTGAAGAAGTCATCCTGATGGATCA  450

seq1  CGCAGCAGTTGGGCAGCGCCTTGAGGAGGCTGTTGGTCAGGGTGGTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCAGTTGGGCAGCGCCTTGAGGAGGCTGTTGGTCAGGGTGGTCTTC  500

seq1  CCACCGTTGGTCACCCTGGAAGGGCAGCGTGTGTGAGGCAGTGGGGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGTTGGTCACCCTGGAAGGGCAGCGTGTGTGAGGCAGTGGGGAGAT  550

seq1  GTCAGCGCCCACTCCCAAGCACCTAACAGGACTCGAGTCACCATGGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCGCCCACTCCCAAGCACCTAACAGGACTCGAGTCACCATGGAGTT  600

seq1  ACAGTCAGGCCCATTCGGGTGGACAGGTGGTGTGTG  636
      ||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGGCCCATTCGGGTGGACAGGTGGTGTGTG  636

seq1: chr10_80853753_80854916
seq2: B6Ng01-264A01.g_67_1219 (reverse)

seq1  CATGTGTGACACTGGTGGGCCTGGCAGTTCCCTCTGCCTCAGTTGGACCA  50
      |||||||||  |  ||||||||||||||||    |  ||||||  || ||
seq2  CATGTGTGAACCCTGTGGGCCTGGCAGTTC---ATCGCTCAGT--GA-CA  44

seq1  CCTGTGTATGTG-ACAACATAGGGTTTGGCCAGGCTGAAACTCAAAACTC  99
      | ||   ||||| ||||||||||  |||||||||||| |||||  |||||
seq2  CTTGGTAATGTGAACAACATAGG--TTGGCCAGGCTGGAACTC--AACTC  90

seq1  CCCTCCTGGGCTGGAGTGCTCTGATTGCAGACTCCACTTACACTTTATTG  149
      |||| |||| ||||||||||| || |||||||| ||||||||| ||||||
seq2  CCCTTCTGGCCTGGAGTGCTC-GA-TGCAGACT-CACTTACAC-TTATTG  136

seq1  ACTTGGAGACAGGTTCTCCAT--GTAGCCTAGGCAAGCCTTGAACTTGAT  197
      || |||| ||| |||||||||   ||||||||||||||| ||||||||||
seq2  ACCTGGAAACAAGTTCTCCATTGTTAGCCTAGGCAAGCC-TGAACTTGAT  185

seq1  ACATAGCAGAGGACAACCTTGAACTCCTGATCCT-CCAGTCACCATCTCC  246
      |||||||||||||  ||||||||||||||||||| |||||||||||||||
seq2  ACATAGCAGAGGAACACCTTGAACTCCTGATCCTCCCAGTCACCATCTCC  235

seq1  TG-AACGCTGGGATGACAGATCTGGGCTTCTGTGATACTGAGGAGAGCCC  295
      || |||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACGCT-GGATGACAGATCTGGGCTTCTGTGATACTGAGGAGAGCCC  284

seq1  AGGGTCTCCTCCAAGGCTGTGCCAGCCCGAGGCCCTGACAGCTTCCTTTC  345
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGGTCTCCTCCAAGGCTGTGCCAGCCCGAGGGCCTGACAGCTTCCTTTC  334

seq1  TTCCTTCCTTCCTTTCTTTCCCTCTTTCTTTCTCTTTTGGTTTTTCAAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTCCTTTCTTTCCCTCTTTCTTTCTCTTTTGGTTTTTCAAGA  384

seq1  CAGGGTTTCTCTGCGTAACAGCCCTGGCTGTCCTGGAACTCAGAGCCATC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTCTGCGTAACAGCCCTGGCTGTCCTGGAACTCAGAGCCATC  434

seq1  ACCTGCAACATTTTTTCCTATGGATAATTCCTTACACAGTGTTTGCTGAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAACATTTTTTCCTATGGATAATTCCTTACACAGTGTTTGCTGAG  484

seq1  AGGAGAAAAGAGTGAGGCCAAATTCACATATAAATTAAAAGCCTATCTGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAAGAGTGAGGCCAAATTCACATATAAATTAAAAGCCTATCTGA  534

seq1  CTATCCAAGTGCCATGACCTTTTTGTCTCAGCCCTGTCCCACACGTTCTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCAAGTGCCATGACCTTTTTGTCTCAGCCCTGTCCCACACGTTCTC  584

seq1  ACAAAACCCTCCTGGGTGCTGTCGATGAGCCCAGTAGCACAGACTGGAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCCTCCTGGGTGCTGTCGATGAGCCCAGTAGCACAGACTGGAAA  634

seq1  CTGAGGCAGGCCACTGAGAAATGTCTGGGTGAAGGTCCCTCAGCTTATTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCAGGCCACTGAGAAATGTCTGGGTGAAGGTCCCTCAGCTTATTG  684

seq1  TCACACACAGCACGGAGTAACCAAGCTGTCATCCTCAGCATTCAAGAGGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACAGCACGGAGTAACCAAGCTGTCATCCTCAGCATTCAAGAGGC  734

seq1  TGAGGCAGGAGGATGGCACATTCCAGGCCAGCCTGGACTAGGGAGCATAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGGAGGATGGCACATTCCAGGCCAGCCTGGACTAGGGAGCATAA  784

seq1  GGAACCATGTGTGGTAGGTCCTCTCCACAGGGCTTCCCCCACCTCAGCTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCATGTGTGGTAGGTCCTCTCCACAGGGCTTCCCCCACCTCAGCTG  834

seq1  GTGGGCATGTCAGTCTGGGCTCCTGACATCCCACCTGGGCTCAGATCTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCATGTCAGTCTGGGCTCCTGACATCCCACCTGGGCTCAGATCTCT  884

seq1  CAGCTCAGGACTCCATGAGTATACAGTAGGAGCTTAATATAGATAGGCAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGGACTCCATGAGTATACAGTAGGAGCTTAATATAGATAGGCAT  934

seq1  GCCTGGTTGGGTTCCTGGTGACATCTTTAATCCCAACACTCAGGAGGCAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTTGGGTTCCTGGTGACATCTTTAATCCCAACACTCAGGAGGCAG  984

seq1  AGGCAGGAGAATCTCTCTGAGTTCGAGAGTCTACAAAGTTAGGTTCCAGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGAATCTCTCTGAGTTCGAGAGTCTACAAAGTTAGGTTCCAGG  1034

seq1  ACAGCCAGGGTTACCGTGTCTCAAAAAACCAAAATCAGGAAAAAAAAGCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGGTTACCGTGTCTCAAAAAACCAAAATCAGGAAAAAAAAGCC  1084

seq1  AAACCCTTTTTCCAAACTGTGTGAGACCTGCCTCAAGCTTGGTATGTAGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTTTTTCCAAACTGTGTGAGACCTGCCTCAAGCTTGGTATGTAGA  1134

seq1  TGAGGATGACCTGGAATTC  1164
      |||||||||||||||||||
seq2  TGAGGATGACCTGGAATTC  1153