BAC Information

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BAC

Clone NameB6Ng01-264O21
Chromosome10 (Build37)
Map Location 40,578,016 - 40,579,194
singlet/doubletsinglet
Overlap geneCdc40
Upstream geneRev3l, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik
Downstream geneWasf1, Gpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264O21.bB6Ng01-264O21.g
ACCGA068710GA068711
length1,1711,158
definitionB6Ng01-264O21.b B6Ng01-264O21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacattcacaaactaagcagtggcactattacctataatattggt
aattataactggtttataatgcagtggcttatagtaaagttagccatgtg
atctcccctgtcatacatggaaaagcccacgcatgatgaagcattttacc
tgctctagggcccaagttttatccttcttaaaaccaaagctacaacaaac
tcaagtcttactaccttaaaccactccctaaatgtgcaacataaagtcta
acttgtaagacactcagttaagaagctccacaatgcgctatgccagccta
tctaataatgctattagaaaagaccctggaaaaaccactctctgagacag
ggctccagtctttacccaagctgtccttgggattcctggcaacctttcta
tcttgaattcttgatttcttatttgtttttatgtagagtaaaatgaatgt
tcacatatagcaaagaatgaacttaatatttttctccttattattatttt
gtttcacaatttagcccagggtggcttaaaacttgctatggagcccaccc
tggactaaagttagcaatcctcctgtcttcatgtcctgagcactggaact
atagacacacaccaatacacctgcacatacctgtatttatttgaactcgg
gaacacccattgttcctgatgaaatatgctgatgttagaacaactcagat
tgctactttaggaccatcttttctatggtatacaaatgtaaattcctaga
ccagcatcgtgtcttctagattcactgcaccgtgcatggaaaattacaaa
tttagctgtcagattatttacctaacatatttttgcattagagaaaaata
aactgctacaagattgctgtagactgataacttgcatttttttaaacaaa
gtttttaattactactcattccaaattataaaggatgcatacagcatgac
tttgtagcccacatctgctgatggggtggaacacaaggaagaaaaaaaac
atagaacaacttctttcctcatgaatgctgtttacatgaacaagagaaca
gccaataaatcaatgtgaaatggctagagcttctaagatggttgactggt
gcactcacagacacctcaaacagcgtcagtgcttctcagtggggaccgaa
ggaactacctgactccctctg
gaattctcacctgaggaatacagaatggctgagaagcacctgaaaaaaaa
tgttcagcatccttaatcatgagggaaatgtaactcaaaacaaccctgag
attccatctcacaccagacagaatggctaagatcaaaaattcaggtgaca
gcagatgctggcgaggatgtggagaaagaggaacactcctccattgttgg
tgggattgcaggcttgtacaaccactctggaaatcagtctgccgcttcct
cagaaaattggacatagtactaccagaggatccagcaatacctctcctgg
gcatatatccagaagatgtcccaaccggtaagaaggacacatgctctact
atgttcatagcagccttatttataatagccagaagctgaaaagaacacag
atgcccctcaacagaggaatggatacagaaaatgtggtacatttacacaa
tggagtactactcaactattaaaaagaatgaatttatgaaattcctaggc
aaatggatggacctggagggcatcatcctgagtgaggtaacacaatcaca
aaggaactcacacaatatgtactcactgataagtggatattagcccagaa
acttaagatacccaagatataagatacaatttgctaaatgcatgaaactc
aagaagaacgaagaccaaagtatggacactgtactgcttctcagaattgg
gaaaaaaacacccatggaaggagttacagagacaaagtctggagctgaga
caaaaggatggaccatctagagactgccatatccagggatccatcccata
atcagcttccaaacgctgacaccattgcattcgccagcaagattttgctg
aaaggacccagatatagctgtctcttgtgagactatgcccggggcctagc
aaacacagaagtggatgctcacagtcagctattggatggatcacagggcc
ccaatggagagctagagaaagtacccaggagctaaagggactgcatccta
taggtgaacaacattatgaactacagtacctcgagctctgactctagatg
ccatatgtatcaaaggatgctagtagccattcactgaaagagaagtccat
tgtacttgcaactaatgtctagtacatggaatcattctaggctcaaaatg
tgccgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_40578016_40579194
seq2: B6Ng01-264O21.b_48_1218

seq1  GAATTCACATTCACAAACTAAGCAGTGGCACTATTACCTATAATATTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTCACAAACTAAGCAGTGGCACTATTACCTATAATATTGGT  50

seq1  AATTATAACTGGTTTATAATGCAGTGGCTTATAGTAAAGTTAGCCATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAACTGGTTTATAATGCAGTGGCTTATAGTAAAGTTAGCCATGTG  100

seq1  ATCTCCCCTGTCATACATGGAAAAGCCCACGCATGATGAAGCATTTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCCTGTCATACATGGAAAAGCCCACGCATGATGAAGCATTTTACC  150

seq1  TGCTCTAGGGCCCAAGTTTTATCCTTCTTAAAACCAAAGCTACAACAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAGGGCCCAAGTTTTATCCTTCTTAAAACCAAAGCTACAACAAAC  200

seq1  TCAAGTCTTACTACCTTAAACCACTCCCTAAATGTGCAACATAAAGTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTTACTACCTTAAACCACTCCCTAAATGTGCAACATAAAGTCTA  250

seq1  ACTTGTAAGACACTCAGTTAAGAAGCTCCACAATGCGCTATGCCAGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTAAGACACTCAGTTAAGAAGCTCCACAATGCGCTATGCCAGCCTA  300

seq1  TCTAATAATGCTATTAGAAAAGACCCTGGAAAAACCACTCTCTGAGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAATGCTATTAGAAAAGACCCTGGAAAAACCACTCTCTGAGACAG  350

seq1  GGCTCCAGTCTTTACCCAAGCTGTCCTTGGGATTCCTGGCAACCTTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCAGTCTTTACCCAAGCTGTCCTTGGGATTCCTGGCAACCTTTCTA  400

seq1  TCTTGAATTCTTGATTTCTTATTTGTTTTTATGTAGAGTAAAATGAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAATTCTTGATTTCTTATTTGTTTTTATGTAGAGTAAAATGAATGT  450

seq1  TCACATATAGCAAAGAATGAACTTAATATTTTTCTCCTTATTATTATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATATAGCAAAGAATGAACTTAATATTTTTCTCCTTATTATTATTTT  500

seq1  GTTTCACAATTTAGCCCAGGGTGGCTTAAAACTTGCTATGGAGCCCACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACAATTTAGCCCAGGGTGGCTTAAAACTTGCTATGGAGCCCACCC  550

seq1  TGGACTAAAGTTAGCAATCCTCCTGTCTTCATGTCCTGAGCACTGGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTAAAGTTAGCAATCCTCCTGTCTTCATGTCCTGAGCACTGGAACT  600

seq1  ATAGACACACACCAATACACCTGCACATACCTGTATTTATTTGAACTCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACACACACCAATACACCTGCACATACCTGTATTTATTTGAACTCGG  650

seq1  GAACACCCATTGTTCCTGATGAAATATGCTGATGTTAGAACAACTCAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCCATTGTTCCTGATGAAATATGCTGATGTTAGAACAACTCAGAT  700

seq1  TGCTACTTTAGGACCATCTTTTCTATGGTATACAAATGTAAATTCCTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTTTAGGACCATCTTTTCTATGGTATACAAATGTAAATTCCTAGA  750

seq1  CCAGCATCGTGTCTTCTAGATTCACTGCACCGTGCATGGAAAATTACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCGTGTCTTCTAGATTCACTGCACCGTGCATGGAAAATTACAAA  800

seq1  TTTAGCTGTCAGATTATTTACCTAACATATTTTTGCATTAGAGAAAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGTCAGATTATTTACCTAACATATTTTTGCATTAGAGAAAAATA  850

seq1  AACTGCTACAAGATTGCTGTAGACTGATAACTTGCATTTTTTTAAACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTACAAGATTGCTGTAGACTGATAACTTGCATTTTTTTAAACAAA  900

seq1  GTTTTTAATTACTACTCATTCCAAATTATAAAGGATGCATACAGCATGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAATTACTACTCATTCCAAATTATAAAGGATGCATACAGCATGAC  950

seq1  TTTGTAGCCCACATCTGCTGAT-GGGTGGAACAC-AGGAAG-AAAAAAAC  997
      |||||||||||||||||||||| ||||||||||| |||||| ||||||||
seq2  TTTGTAGCCCACATCTGCTGATGGGGTGGAACACAAGGAAGAAAAAAAAC  1000

seq1  ATAG-ACAACTTCTTTCCTCATGAATGCTGTTACAATGAAC-AGAG-ACA  1044
      |||| |||||||||||||||||||||||||||   |||||| |||| |||
seq2  ATAGAACAACTTCTTTCCTCATGAATGCTGTTTACATGAACAAGAGAACA  1050

seq1  GCCATAAAATTCAATGTGAAAATGGCTAAGAGCTTCTAAGATGCGTGACC  1094
      |||| | || |||||||| |||||||| |||||||||||||||  |||| 
seq2  GCCA-ATAAATCAATGTG-AAATGGCT-AGAGCTTCTAAGATGGTTGACT  1097

seq1  TGTGCACTCACAGACCACCTCAAAACAGCGTCAGGTGCTTCTCCAGTGGG  1144
       ||||||||||||| |||||| ||||||||||| |||||||| |||||||
seq2  GGTGCACTCACAGA-CACCTC-AAACAGCGTCA-GTGCTTCT-CAGTGGG  1143

seq1  GAGCCGAGAGGGAAACTACCCCAGACTCCCCTCTG  1179
      || |||| |||  |||||  || |||| |||||||
seq2  GA-CCGA-AGG--AACTA--CCTGACT-CCCTCTG  1171