BAC Information

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BAC

Clone NameB6Ng01-265B21
Chromosome10 (Build37)
Map Location 74,895,069 - 75,084,471
singlet/doubletdoublet
Overlap geneUpb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1
Upstream genePcdh15, EG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707
Downstream geneSusd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265B21.bB6Ng01-265B21.g
ACCGA068852GA068853
length1,1121,057
definitionB6Ng01-265B21.b B6Ng01-265B21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,083,377 - 75,084,471)(74,895,069 - 74,896,135)
sequence
gaattctatagattaaggccaggcactgggggtacacacttttaattcca
gcactcaggtggcagaagcaagcatatctctgggagttcaagaccagcct
tgtctacatatacttccaggacagtagggctacatagtgagatcctgata
gccacttcccatctaaaaattgaataggtaaagtaatagacctaccctat
agtcaatgcccaacagaaattattattttaagatacatatcagtggggca
ggaaatagcactgggcactctttgagaccatctaaattcagtccctagtg
cctatgttgggtggttcataaccacctgtaactccagtttcaagtactct
atttctgattaggtactctagattagattaggtattcttaatttggaact
ccttgggaaacgacactcacatacacaaacctacacacacacacaaaatt
taaaaacaaatctaaaaaataactgtatctagtcatgtgaagggaacctc
aacccattccattcctgttttaattattttgctttgagaaaagatcactg
tctctagccaaagtagcctgtctgtttttgttttgtttttgttttttggc
aagaatagatggtgtgggggcggaaggaagagatggctgctcttgaagaa
gactgggatttgactcccagaacacataatagctcacagcagtctgtaac
ttcagtcccggggaatacaacgcccccttctggtttccttgagcattaca
tgtacacagtgcatagacatatatgcaaaacacctatacagaagataaaa
aggagatgtctcagtggctgaaagtacttagtgcttttgaaaaggattgg
ggcttggtttccagaactcccagggcacctcacaactgcctatgactcca
gttccagaagattcaaacccttcttctggagctccatgggccccgagtgc
atggtggtgtttatacactcatcagatgcacacacatacgtgttattttt
ttaattataaaaactaacgtgaggctagtgagatggcctggtgtagagac
cgtgtcccacagtgacaggagagaaatgactctcagagctgtcttcttgg
cttctgtctagc
gaattcagcttcattcaaggttccggctaaagtatatctggcataaacgt
agcctcattctttgcaatgacctaaaatgaatggtgtctaccctacttcc
tgggagtctttattcttctgtggaaacttcatctacagtgtcttaaagca
cctaaatttatatcagcattcgggtcttttaaactttgaacagaatggtc
cactgactctccttacagtgtcctttggcatctctggtccacagctccaa
acttcagtgttccctccaattgcctatgaaccatatagccaggtttctca
aagagaaaacacacacacacacacacttccaatatcaatggtctaaatag
ttacttttcttgttactgggggccacaagtcaggcaagaaagaactcaaa
ggaagcagtgtttcttttgaaggcacaggtttcatggttcaggccatcaa
ggcaggttacgattcacagtaggaatgtgacggctgtgtctggaggagga
ggcagagagagattaatgctgttgtccaattagctctcccctcccccttc
cttttaattcagtctaagactccagctcaggggcacagtactgcccaagt
ttggggataagggtgggacactcctcaattcagtctctcagggaattccc
tcatctgtatccttaggagtgtgtctcctaggtgattccaaattattaca
agttttaaaagtctaggaatttacacgccaacatcccaacctggaacgga
cctcttccaaagcacgaggatgggtaaagcaggaaatactggcttctagt
ctgtggctatgatgtctgtgttctgtcccaatagggttagggtcatgaga
aagctctacactctcaacagatttttattcagtttcttgtaaatgtcaga
ggcaacttttcatttgctttcgctttgaagcccgaggctccttacttaag
tacatccctcgcagtcagaattttcacagcagctcccgagagactagaat
gtattctctagtcgcttgttaatgctatgagagtgtggtgtgggtctagg
gagagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_75083377_75084471
seq2: B6Ng01-265B21.b_70_1158 (reverse)

seq1  GCTAGACAGAGGCC-AGAAGACAGCTCTTGAGAGTCATTTCTCTCCTGTC  49
      |||||||||| ||| |||||||||||| ||||||||||||||||||||||
seq2  GCTAGACAGAAGCCAAGAAGACAGCTC-TGAGAGTCATTTCTCTCCTGTC  49

seq1  ACCTTGTGGGACAAGGGTCTCTACCAACAGGGCCATCTCACTAGCCTCAC  99
      ||  |||||||| | |||||||||  ||  ||||||||||||||||||||
seq2  AC--TGTGGGAC-ACGGTCTCTAC--ACCAGGCCATCTCACTAGCCTCAC  94

seq1  GTTAGTTTTTATAATTAAAAAAAATTACACGTATGTGTGTGCATCTGATG  149
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  GTTAGTTTTTATAATT-AAAAAAATAACACGTATGTGTGTGCATCTGATG  143

seq1  AGTGTATAAACACCA-CATGCACTCGGGGGCCCATGGAGCTCCAGAAGAA  198
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  AGTGTATAAACACCACCATGCACTC-GGGGCCCATGGAGCTCCAGAAGAA  192

seq1  GGGTTTGAATCTTCTGGAACTGGAGTCATAGGCAGTTGTGAGGTGCCCTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGAATCTTCTGGAACTGGAGTCATAGGCAGTTGTGAGGTGCCCTG  242

seq1  GGAGTTCTGGAAACCAAGCCCCAATCCTTTTCAAAAGCACTAAGTACTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCTGGAAACCAAGCCCCAATCCTTTTCAAAAGCACTAAGTACTTT  292

seq1  CAGCCACTGAGACATCTCCTTTTTATCTTCTGTATAGGTGTTTTGCATAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTGAGACATCTCCTTTTTATCTTCTGTATAGGTGTTTTGCATAT  342

seq1  ATGTCTATGCACTGTGTACATGTAATGCTCAAGGAAACCAGAAGGGGGCG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTATGCACTGTGTACATGTAATGCTCAAGGAAACCAGAAGGGGGCG  392

seq1  TTGTATTCCCCGGGACTGAAGTTACAGACTGCTGTGAGCTATTATGTGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTCCCCGGGACTGAAGTTACAGACTGCTGTGAGCTATTATGTGTT  442

seq1  CTGGGAGTCAAATCCCAGTCTTCTTCAAGAGCAGCCATCTCTTCCTTCCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTCAAATCCCAGTCTTCTTCAAGAGCAGCCATCTCTTCCTTCCG  492

seq1  CCCCCACACCATCTATTCTTGCCAAAAAACAAAAACAAAACAAAAACAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACACCATCTATTCTTGCCAAAAAACAAAAACAAAACAAAAACAGA  542

seq1  CAGGCTACTTTGGCTAGAGACAGTGATCTTTTCTCAAAGCAAAATAATTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTACTTTGGCTAGAGACAGTGATCTTTTCTCAAAGCAAAATAATTA  592

seq1  AAACAGGAATGGAATGGGTTGAGGTTCCCTTCACATGACTAGATACAGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGAATGGAATGGGTTGAGGTTCCCTTCACATGACTAGATACAGTT  642

seq1  ATTTTTTAGATTTGTTTTTAAATTTTGTGTGTGTGTGTAGGTTTGTGTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAGATTTGTTTTTAAATTTTGTGTGTGTGTGTAGGTTTGTGTAT  692

seq1  GTGAGTGTCGTTTCCCAAGGAGTTCCAAATTAAGAATACCTAATCTAATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTCGTTTCCCAAGGAGTTCCAAATTAAGAATACCTAATCTAATC  742

seq1  TAGAGTACCTAATCAGAAATAGAGTACTTGAAACTGGAGTTACAGGTGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTACCTAATCAGAAATAGAGTACTTGAAACTGGAGTTACAGGTGGT  792

seq1  TATGAACCACCCAACATAGGCACTAGGGACTGAATTTAGATGGTCTCAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACCACCCAACATAGGCACTAGGGACTGAATTTAGATGGTCTCAAA  842

seq1  GAGTGCCCAGTGCTATTTCCTGCCCCACTGATATGTATCTTAAAATAATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCCAGTGCTATTTCCTGCCCCACTGATATGTATCTTAAAATAATA  892

seq1  ATTTCTGTTGGGCATTGACTATAGGGTAGGTCTATTACTTTACCTATTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTTGGGCATTGACTATAGGGTAGGTCTATTACTTTACCTATTCA  942

seq1  ATTTTTAGATGGGAAGTGGCTATCAGGATCTCACTATGTAGCCCTACTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGATGGGAAGTGGCTATCAGGATCTCACTATGTAGCCCTACTGT  992

seq1  CCTGGAAGTATATGTAGACAAGGCTGGTCTTGAACTCCCAGAGATATGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGTATATGTAGACAAGGCTGGTCTTGAACTCCCAGAGATATGCT  1042

seq1  TGCTTCTGCCACCTGAGTGCTGGAATTAAAAGTGTGTACCCCCAGTG  1095
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGCCACCTGAGTGCTGGAATTAAAAGTGTGTACCCCCAGTG  1089

seq1: chr10_74895069_74896135
seq2: B6Ng01-265B21.g_68_1124

seq1  GAATTCAGCTTCATTCAAGGTTCCGGCTAAAGTATATCTGGCATAAACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTCATTCAAGGTTCCGGCTAAAGTATATCTGGCATAAACGT  50

seq1  AGCCTCATTCTTTGCAATGACCTAAAATGAATGGTGTCTACCCTACTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCATTCTTTGCAATGACCTAAAATGAATGGTGTCTACCCTACTTCC  100

seq1  TGGGAGTCTTTATTCTTCTGTGGAAACTTCATCTACAGTGTCTTAAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCTTTATTCTTCTGTGGAAACTTCATCTACAGTGTCTTAAAGCA  150

seq1  CCTAAATTTATATCAGCATTCGGGTCTTTTAAACTTTGAACAGAATGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATTTATATCAGCATTCGGGTCTTTTAAACTTTGAACAGAATGGTC  200

seq1  CACTGACTCTCCTTACAGTGTCCTTTGGCATCTCTGGTCCACAGCTCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTCTCCTTACAGTGTCCTTTGGCATCTCTGGTCCACAGCTCCAA  250

seq1  ACTTCAGTGTTCCCTCCAATTGCCTATGAACCATATAGCCAGGTTTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTGTTCCCTCCAATTGCCTATGAACCATATAGCCAGGTTTCTCA  300

seq1  AAGAGAAAACACACACACACACACACTTCCAATATCAATGGTCTAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAACACACACACACACACACTTCCAATATCAATGGTCTAAATAG  350

seq1  TTACTTTTCTTGTTACTGGGGGCCACAAGTCAGGCAAGAAAGAACTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTCTTGTTACTGGGGGCCACAAGTCAGGCAAGAAAGAACTCAAA  400

seq1  GGAAGCAGTGTTTCTTTTGAAGGCACAGGTTTCATGGTTCAGGCCATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGTGTTTCTTTTGAAGGCACAGGTTTCATGGTTCAGGCCATCAA  450

seq1  GGCAGGTTACGATTCACAGTAGGAATGTGACGGCTGTGTCTGGAGGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTTACGATTCACAGTAGGAATGTGACGGCTGTGTCTGGAGGAGGA  500

seq1  GGCAGAGAGAGATTAATGCTGTTGTCCAATTAGCTCTCCCCTCCCCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAGAGATTAATGCTGTTGTCCAATTAGCTCTCCCCTCCCCCTTC  550

seq1  CTTTTAATTCAGTCTAAGACTCCAGCTCAGGGGCACAGTACTGCCCAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATTCAGTCTAAGACTCCAGCTCAGGGGCACAGTACTGCCCAAGT  600

seq1  TTGGGGATAAGGGTGGGACACTCCTCAATTCAGTCTCTCAGGGAATTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGATAAGGGTGGGACACTCCTCAATTCAGTCTCTCAGGGAATTCCC  650

seq1  TCATCTGTATCCTTAGGAGTGTGTCTCCTAGGTGATTCCAAATTATTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTATCCTTAGGAGTGTGTCTCCTAGGTGATTCCAAATTATTACA  700

seq1  AGTTTTAAAAGTCTAGGAATTTACACGCCAACATCCCAACCTGGAACGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAAAGTCTAGGAATTTACACGCCAACATCCCAACCTGGAACGGA  750

seq1  CCTCTTCCAAAGCACGAGGATGGGTAAAGCAGGAAATACTGGCTTCTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCAAAGCACGAGGATGGGTAAAGCAGGAAATACTGGCTTCTAGT  800

seq1  CTGTGGCTATGATGTCTGTGTTCTGTCCCAATAGGGTTAGGGTCATGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGTGGCTATGATGTCTGTGTTCTGTCCCAATAGGGTTAGGGTCATGAG-  849

seq1  AAAGCTCTACACTCTCAACAGATTTTTATTCAGTTTCTTGTAAATGTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTACACTCTCAACAGATTTTTATTCAGTTTCTTGTAAATGTCAG  899

seq1  AGGCAACTTTTCATTTGCTTTCGCTTTGAAGCCCGAGGCTCCTTACTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACTTTTCATTTGCTTTCGCTTTGAAGCCCGAGGCTCCTTACTTAA  949

seq1  GTAACATCCCTCCGCAGTCAGAATTTTCACAGCAGGCTCCCGAGAGACCT  1000
      || |||||||| |||||||||||||||||||||| |||||||||||| ||
seq2  GT-ACATCCCT-CGCAGTCAGAATTTTCACAGCA-GCTCCCGAGAGA-CT  995

seq1  AGAATGTAATTCTCTAGTCGCTTGTTAAATGCCTATGGAGGAGGTGTGGT  1050
      ||||||| |||||||||||||||||| |||| |||| |||   |||||||
seq2  AGAATGT-ATTCTCTAGTCGCTTGTT-AATG-CTAT-GAG--AGTGTGGT  1039

seq1  GTGGGTCTA-GGAGAGTT  1067
      ||||||||| ||||||||
seq2  GTGGGTCTAGGGAGAGTT  1057