BAC Information

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BAC

Clone NameB6Ng01-265C06
Chromosome10 (Build37)
Map Location 111,727,686 - 111,925,639
singlet/doubletdoublet
Overlap geneKcnc2
Upstream geneOsbpl8, Bbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2
Downstream geneLOC100042639, 4921506J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265C06.bB6Ng01-265C06.g
ACCGA068868GA068869
length1,101907
definitionB6Ng01-265C06.b B6Ng01-265C06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,924,536 - 111,925,639)(111,727,686 - 111,728,492)
sequence
gaattcctgacagtgagatataagttttaaactaacttgtgtagcattat
gcacaggtttataataaggtatagattaattcctaacatactgagatttt
attagttgcaccaattgtatcattagctagaagacttgtaacttgttttg
gtttttgttttgacttttggtagtattttaggtgattttcaggtatttat
cagagcaaacaaaaaaatcatttttttcttctatttctttctttgtccct
tcttttaaaacttgttaggacagaatattcagaattgcagtgacaaggca
aattcctagtgatatcagccatagaacatgatctatttatttctgaatat
cctgcttttgttactgtagcttttaggacctgtagaagttttcccctata
gcttcctatatctaaaaacaaatcataacaaggtcttaattttctcacaa
cttttttatataatagtaagattattgatttttatgctaatctagaaaag
aatcagttttctaatataagacaactccccttggccatgataaagcattt
taaagagtttttttcttttccatttttgcttgcatgctgtaagtttacat
tagtatatgcttcttttacttatttaattttgcttgcactttcttttttt
ttttccatttcaaatcaaagttgcatttcttcagagaaaataagtggaaa
acttcccttctttttctacactctgcaccagctccttggcagtttgcgag
aacttattaatcaaacccatttggtcggtggcttttctttgcagagctgg
aatgcatgctaatcaccaccaaatttcattagcaggttatggcctcttct
acctttctattttatactgccttaattttgatattttacacacaaaactt
ctgaaattctggacacttctagaattttaagttttgctctcacaaatggt
attccttttatagactaaaatcacaatggtatcagaagtcatttaatttt
ctgctagatttcatgtatctcaaattgtatctatttctgtgaacagtccc
tgaaagttgtctattagtcacttcagagactcgatgccttgattaatatt
t

gaattcacttactcagaatgagtttgtcacttccatcctttagcctgtga
atcttataacttatttgcaattaaataatattccattgaatgtaggtatc
acattgacagtatagaaatggatgtctagactgtttccatttcgtagcta
ttaggaccaaaacagcaatgaatgtggatgagcaagggtctttgttgtag
ggttagagtcctttgggatatggcaaggtgtgagatagctggtccttgtg
acagggctgtttctggtttgaatggctaagacccaaaatgacaaaaatgc
tgctgtggatgtggtgaaaaaaaaaagcacttattcaactagaagtaaga
gtgccaactggtgaagccattgtgaaaatcagtgttcatcttgttttctg
agacaggatctcaaactgaatctgaaactagttcagagaggctggctagc
ctagccagtgagtcacagtgacccttttgcatctattgcatgggtttttg
gattgcaggcatccactaccctcctgtgtgtgttgggggatttgaactca
catcttgtagctttcacagtactttgctaactaaacatgtaaccagtgcc
tatatcgttattttataaatctgcagtttacaaggttcccaacggaggag
ctggagaaaggaccgaaggagctgaaggggtttgcagccccattgtagga
acaacaatatcaaccaaccagtacccccagagcttccagggagtaaacca
ccaaccaaagagtacccatggctccagctgcatatatagcaaaggatggc
cttgttggacatcaatgagaggagaggcccttgatcgtgtgaaggcccga
tgccccagtgtagggggatgccaggacagggaagcagagtgggtgggttg
gtgagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_111924536_111925639
seq2: B6Ng01-265C06.b_45_1145 (reverse)

seq1  AAATA-AAATCAAAGAGCATCGAGTCTCTGAAGTGACTAATAGACACTTT  49
      |||||  ||||||   ||||||||||||||||||||||||||||||  ||
seq2  AAATATTAATCAA--GGCATCGAGTCTCTGAAGTGACTAATAGACAACTT  48

seq1  TCAGGGAACTGTTCACAGAAATAGATACAATTTTGAGATACATGAAATCT  99
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  TCAGGG-ACTGTTCACAGAAATAGATACAA-TTTGAGATACATGAAATCT  96

seq1  AGCAGAAAATTAAATGACTTCTGATACCATTGTGATTTTAGTCTATAAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAAATTAAATGACTTCTGATACCATTGTGATTTTAGTCTATAAAA  146

seq1  GGAATACCATTTGTGAGAGCAAAACTTAAAATTCTAGAAGTGTCCAGAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACCATTTGTGAGAGCAAAACTTAAAATTCTAGAAGTGTCCAGAAT  196

seq1  TTCAGAAGTTTTGTGTGTAAAATATCAAAATTAAGGCAGTATAAAATAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGTTTTGTGTGTAAAATATCAAAATTAAGGCAGTATAAAATAGA  246

seq1  AAGGTAGAAGAGGCCATAACCTGCTAATGAAATTTGGTGGTGATTAGCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGAAGAGGCCATAACCTGCTAATGAAATTTGGTGGTGATTAGCAT  296

seq1  GCATTCCAGCTCTGCAAAGAAAAGCCACCGACCAAATGGGTTTGATTAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCAGCTCTGCAAAGAAAAGCCACCGACCAAATGGGTTTGATTAAT  346

seq1  AAGTTCTCGCAAACTGCCAAGGAGCTGGTGCAGAGTGTAGAAAAAGAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTCGCAAACTGCCAAGGAGCTGGTGCAGAGTGTAGAAAAAGAAGG  396

seq1  GAAGTTTTCCACTTATTTTCTCTGAAGAAATGCAACTTTGATTTGAAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTTCCACTTATTTTCTCTGAAGAAATGCAACTTTGATTTGAAATG  446

seq1  GAAAAAAAAAAAGAAAGTGCAAGCAAAATTAAATAAGTAAAAGAAGCATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAAGAAAGTGCAAGCAAAATTAAATAAGTAAAAGAAGCATA  496

seq1  TACTAATGTAAACTTACAGCATGCAAGCAAAAATGGAAAAGAAAAAAACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATGTAAACTTACAGCATGCAAGCAAAAATGGAAAAGAAAAAAACT  546

seq1  CTTTAAAATGCTTTATCATGGCCAAGGGGAGTTGTCTTATATTAGAAAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAATGCTTTATCATGGCCAAGGGGAGTTGTCTTATATTAGAAAAC  596

seq1  TGATTCTTTTCTAGATTAGCATAAAAATCAATAATCTTACTATTATATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTTTCTAGATTAGCATAAAAATCAATAATCTTACTATTATATAA  646

seq1  AAAAGTTGTGAGAAAATTAAGACCTTGTTATGATTTGTTTTTAGATATAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGTGAGAAAATTAAGACCTTGTTATGATTTGTTTTTAGATATAG  696

seq1  GAAGCTATAGGGGAAAACTTCTACAGGTCCTAAAAGCTACAGTAACAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTATAGGGGAAAACTTCTACAGGTCCTAAAAGCTACAGTAACAAAA  746

seq1  GCAGGATATTCAGAAATAAATAGATCATGTTCTATGGCTGATATCACTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATATTCAGAAATAAATAGATCATGTTCTATGGCTGATATCACTAG  796

seq1  GAATTTGCCTTGTCACTGCAATTCTGAATATTCTGTCCTAACAAGTTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGCCTTGTCACTGCAATTCTGAATATTCTGTCCTAACAAGTTTTA  846

seq1  AAAGAAGGGACAAAGAAAGAAATAGAAGAAAAAAATGATTTTTTTGTTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGGACAAAGAAAGAAATAGAAGAAAAAAATGATTTTTTTGTTTG  896

seq1  CTCTGATAAATACCTGAAAATCACCTAAAATACTACCAAAAGTCAAAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATAAATACCTGAAAATCACCTAAAATACTACCAAAAGTCAAAACA  946

seq1  AAAACCAAAACAAGTTACAAGTCTTCTAGCTAATGATACAATTGGTGCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAACAAGTTACAAGTCTTCTAGCTAATGATACAATTGGTGCAA  996

seq1  CTAATAAAATCTCAGTATGTTAGGAATTAATCTATACCTTATTATAAACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAAATCTCAGTATGTTAGGAATTAATCTATACCTTATTATAAACC  1046

seq1  TGTGCATAATGCTACACAAGTTAGTTTAAAACTTATATCTCACTGTCAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATAATGCTACACAAGTTAGTTTAAAACTTATATCTCACTGTCAGG  1096

seq1  AATTC  1104
      |||||
seq2  AATTC  1101


seq1: chr10_111727686_111728492
seq2: B6Ng01-265C06.g_167_972

seq1  CATTGACAGTATAGAAATGGATGTCTAGACTGTTTCCATTTCGTAGCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACAGTATAGAAATGGATGTCTAGACTGTTTCCATTTCGTAGCTAT  50

seq1  TAGGACCAAAACAGCAATGAATGTGGATGAGCAAGGGTCTTTGTTGTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCAAAACAGCAATGAATGTGGATGAGCAAGGGTCTTTGTTGTAGG  100

seq1  GTTAGAGTCCTTTGGGATATGGCAAGGTGTGAGATAGCTGGTCCTTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGTCCTTTGGGATATGGCAAGGTGTGAGATAGCTGGTCCTTGTGA  150

seq1  CAGGGCTGTTTCTGGTTTGAATGGCTAAGACCCAAAATGACAAAAATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGTTTCTGGTTTGAATGGCTAAGACCCAAAATGACAAAAATGCT  200

seq1  GCTGTGGATGTGGTGAAAAAAAAAAGCACTTATTCAACTAGAAGTAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGATGTGGTGAAAAAAAAAAGCACTTATTCAACTAGAAGTAAGAG  250

seq1  TGCCAACTGGTGAAGCCATTGTGAAAATCAGTGTTCATCTTGTTTTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACTGGTGAAGCCATTGTGAAAATCAGTGTTCATCTTGTTTTCTGA  300

seq1  GACAGGATCTCAAACTGAATCTGAAACTAGTTCAGAGAGGCTGGCTAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGATCTCAAACTGAATCTGAAACTAGTTCAGAGAGGCTGGCTAGCC  350

seq1  TAGCCAGTGAGTCACAGTGACCCTTTTGCATCTATTGCATGGGTTTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGTGAGTCACAGTGACCCTTTTGCATCTATTGCATGGGTTTTTGG  400

seq1  ATTGCAGGCATCCACTACCCTCCTGTGTGTGTTGGGGGATTTGAACTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGGCATCCACTACCCTCCTGTGTGTGTTGGGGGATTTGAACTCAC  450

seq1  ATCTTGTAGCTTTCACAGTACTTTGCTAACTAAACATGTAACCAGTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTAGCTTTCACAGTACTTTGCTAACTAAACATGTAACCAGTGCCT  500

seq1  ATATCGTTATTTTATAAATCTGCAGTTTACAAGGTTCCCAACGGAGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGTTATTTTATAAATCTGCAGTTTACAAGGTTCCCAACGGAGGAGC  550

seq1  TGGAGAAAGGACCGAAGGAGCTGAAGGGGTTTGCAGCCCCATTGTAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAGGACCGAAGGAGCTGAAGGGGTTTGCAGCCCCATTGTAGGAA  600

seq1  CAACAATATCAACCAACCAGTACCCCCAGAGCTTCCAGGGAGTAAACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATATCAACCAACCAGTACCCCCAGAGCTTCCAGGGAGTAAACCAC  650

seq1  CAACCAAAGAGTACCCATGGCTCCAGCTGCATATATAGCAAAGGATGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAAGAGTACCCATGGCTCCAGCTGCATATATAGCAAAGGATGGCC  700

seq1  TTGTTGGACATCAATGAGAGGAGAGGCCCTTGATCGTGTGAAGGCCCGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGACATCAATGAGAGGAGAGGCCCTTGATCGTGTGAAGGCCCGAT  750

seq1  GCCCCAGTGTAGGGGGATGCCAGGACAGGGAAGCAGGAGTGGGTGGGTTG  800
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCCCCAGTGTAGGGGGATGCCAGGACAGGGAAGCA-GAGTGGGTGGGTTG  799

seq1  GTGAGCA  807
      |||||||
seq2  GTGAGCA  806


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