BAC Information

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BAC

Clone NameB6Ng01-265E11
Chromosome18 (Build37)10 (Build37)
Map Location 23,133,407 - 23,133,89148,130,465 - 48,131,666
singlet/doubletsingletsinglet
Overlap geneNol4
Upstream gene4921528I01Rik, LOC546708, LOC100040547, Asxl3
Downstream geneLOC100040579, LOC665797, Dtna, Mapre2, EG665813, LOC100040623, Zfp397, C230097I24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265E11.bB6Ng01-265E11.g
ACCGA068970GA068971
length1,1111,187
definitionB6Ng01-265E11.b B6Ng01-265E11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(23,133,407 - 23,133,891)(48,130,465 - 48,131,666)
sequence
gaattcacagccagagtaactagacgagaaaaggtcaaagggatacaaat
ttaaaagggggaagttaaaatactactattttcagaagatatgatagtat
attttagtaaccaaaatttataccagagatctcttaaacaacttcagcaa
agtggctggacataaaattaactcaaacaaatcattggccttcctctagt
caaaggataaatgtgctgagaaagaaattagggaaacaacacccttcaca
atagtgagaaacaatacaaaataccttggtgtgactctacttaagcaact
gaaagatctgtatgaaaagaacttcaagtctctgaagaacggaatcgaaa
atctcggatggaaagatctcccatgatcatggattgtcaggatcaatata
gtaaaaatggccatcttgctgaaaacaatctacagattcaataaaatccc
catcaaaactccaactcaattctccatagacttagaaagaaaacttttca
aattcatctggaataacaaatacccaggaaagcaaaaactcttctcaaca
ataacagaacttctggcagaatcacctcaagctgtactacagagcaatca
tgataaaaactgtgagacccaattttcttatggcaacaattatcaaaata
tactgttcagatattgtgtaagaaataatttgaccaactaaactgtatct
ctatttctttcatctatatgtatgtaatctctctctctctctctctctct
ctctctctctctctccctccctccctctccctctctctctcttccttcct
ccccctctctcccttcttcccctctctatctatctctatctatctaccta
tctatctatctgaacagagagatgaagtaaatataaattatctaataaaa
taagcaagagtgtattatttttgaagagaatataaaagctgtactaaatt
taaaaattaagtcaaatgcctaaggagttaacattgacatggccaccata
acaggagaaattttaccaaaagcatcaaagattgattgattagcatgtgc
tgatctaccttaagggaatgaagtgacactaaatagaatttttaactttt
ttgctttgctt

gaattcactatttgctttttataacatttttcagaacttcaatatccttt
tcctctttgaatatttagttgtttaaatagaaagtaaaacacagggcttt
atattcatatatttggtttgtgtctataatcctgctattgtgaatgaagc
taatgcatacttagtgtatatgtcttcttatgcatttattttcagaattc
tagatataagattaatgagaatactgctgaataactgcatttttatttga
ggatccctttagagccggcagtatgatgttcaaacacagctatcatctta
agagagggctgagtaactaccatagattcaagaatgtcatatttacctga
gaatttcataattaagaatacgtacaattagagttttatacctcccttgc
agacttgtcttgattgcttttggttttattcttttttgaaatttgaaaat
actagttattttaagagccattcttaccactgtcttccctctagaacaag
agcagcttgtttgtagccaggaaatactctggtttttatatttgcttttc
aaatctctattcaccacccactgacttaccatcactatactccaagagat
tagcattgctctccaaaaataatgtaatcaggtatctccatgtctattta
tcattttttccatgattttcaaatgcccaattgacagcactagctaacta
tatttctttgaagggttatgttgtatctatttcctatctgtgaaatttgt
ggaaatatatctcgtagctctatgttaggctgccttagttgtacactcat
ggtcaagggaatattcctaattgccagtgtcctggaaagaaatcaattaa
ttcatcctaaaggatgacactttctgcattacttcatggacaaatgttac
ctacgattatttcttatttgaatatagtatccctgattgagagtaaaagc
actgtttatgcaattggaaacaaatgaaaatcacacacacactcatatag
tcccccctacacacacacatgtgcacagcataacaaacaagtccatctac
ttttatgacatcttcttgtacatttttttactgagtacatctacagatta
gagtgtaaatcaagtgcaaccagtaatttttctatatcgaatttatacag
ttccctctcacaattggccaaatccagtattagttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_23133407_23133891
seq2: B6Ng01-265E11.b_777_1155

seq1  --CTCTCTCCCTCTCTCCATCCCTCTCTCTCTCTCTCTCTCCCTCTCTCT  48
        ||||||| |||||||  || ||||||||||| ||| ||||||||| ||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCTCCCT  50

seq1  CTGTCTGTGTGTGTGAACATGTGCCTGTTATCCTAGAACTTAGGGAATAG  98
      || ||| | |   |   | |   ||| |   |||    |||      |  
seq2  CTCTCTCTCTTCCT--TCCTCCCCCTCTCTCCCT---TCTTCCCCTCTCT  95

seq1  AAGCATAT-AAGCTGAGATTGAGGCCAACCTCGGAACTATGGTAACACTG  147
      |   || |  | ||   ||  |  || | ||   | ||||   ||||  |
seq2  ATCTATCTCTATCT---ATCTA--CCTATCT---ATCTATCTGAACAGAG  137

seq1  CACCTCAAAAACAATAATGAAAATACACTAA-AAACAAAGTTTTCCAGGG  196
       |  | ||  |    |||  ||||   |||| |||  |||    | || |
seq2  -AGATGAAGTA----AATATAAATTATCTAATAAAATAAG----CAAGAG  178

seq1  ATAACGACGACATTTACTTTTTAAAATATTCT------TTTAACAAA--G  238
         |         ||| |||| || | | | |      | ||  |||   
seq2  TGTA---------TTATTTTTGAAGAGAATATAAAAGCTGTACTAAATTT  219

seq1  AAAAATTCCACCAAG--AAATAACTGGAAAGTTGAGCATTGAGAGTGTTT  286
      |||||||     |||  ||||  ||    |||| | |||||| |      
seq2  AAAAATT-----AAGTCAAATGCCTAAGGAGTT-AACATTGACA------  257

seq1  AGTTGCTAAGCTCTGGAAGTTGGGCAGGGCTCAGAGTTTTGTGAATAATG  336
        | ||    | |   ||      ||||    |||           ||| 
seq2  --TGGC----CACCATAA------CAGG----AGA-----------AATT  280

seq1  TGGCACTAAACATGAAAAGAACCTGCACATTAAATCACTACACTCACAGG  386
      |  |   || ||| ||          | ||| | | | ||    ||   |
seq2  TTACCAAAAGCATCAA----------AGATTGATTGATTA---GCATGTG  317

seq1  CTGAGGTCTTCCTGAACACAGAGAACTAGAAGAAAATCATGTCTACCTTC  436
      ||||  ||| ||| |    || |||   ||||                  
seq2  CTGA--TCTACCTTA----AGGGAA--TGAAG------------------  341

seq1  TTGCAAAGAAGCAGAGTGAGGTGATGCCCTTTGCTTTTTTGCTTTGCTT  485
       ||  |  ||  ||| |            ||  ||||||||||||||||
seq2  -TGACACTAAATAGAAT----------TTTTAACTTTTTTGCTTTGCTT  379


seq1: chr10_48130465_48131666
seq2: B6Ng01-265E11.g_71_1257

seq1  GAATTCACTATTTGCTTTTTATAACATTTTTCAGAACTTCAATATCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATTTGCTTTTTATAACATTTTTCAGAACTTCAATATCCTTT  50

seq1  TCCTCTTTGAATATTTAGTTGTTTAAATAGAAAGTAAAACACAGGGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTGAATATTTAGTTGTTTAAATAGAAAGTAAAACACAGGGCTTT  100

seq1  ATATTCATATATTTGGTTTGTGTCTATAATCCTGCTATTGTGAATGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATATATTTGGTTTGTGTCTATAATCCTGCTATTGTGAATGAAGC  150

seq1  TAATGCATACTTAGTGTATATGTCTTCTTATGCATTTATTTTCAGAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCATACTTAGTGTATATGTCTTCTTATGCATTTATTTTCAGAATTC  200

seq1  TAGATATAAGATTAATGAGAATACTGCTGAATAACTGCATTTTTATTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATAAGATTAATGAGAATACTGCTGAATAACTGCATTTTTATTTGA  250

seq1  GGATCCCTTTAGAGCCGGCAGTATGATGTTCAAACACAGCTATCATCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCCTTTAGAGCCGGCAGTATGATGTTCAAACACAGCTATCATCTTA  300

seq1  AGAGAGGGCTGAGTAACTACCATAGATTCAAGAATGTCATATTTACCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGCTGAGTAACTACCATAGATTCAAGAATGTCATATTTACCTGA  350

seq1  GAATTTCATAATTAAGAATACGTACAATTAGAGTTTTATACCTCCCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCATAATTAAGAATACGTACAATTAGAGTTTTATACCTCCCTTGC  400

seq1  AGACTTGTCTTGATTGCTTTTGGTTTTATTCTTTTTTGAAATTTGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGTCTTGATTGCTTTTGGTTTTATTCTTTTTTGAAATTTGAAAAT  450

seq1  ACTAGTTATTTTAAGAGCCATTCTTACCACTGTCTTCCCTCTAGAACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTATTTTAAGAGCCATTCTTACCACTGTCTTCCCTCTAGAACAAG  500

seq1  AGCAGCTTGTTTGTAGCCAGGAAATACTCTGGTTTTTATATTTGCTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTTGTTTGTAGCCAGGAAATACTCTGGTTTTTATATTTGCTTTTC  550

seq1  AAATCTCTATTCACCACCCACTGACTTACCATCACTATACTCCAAGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTATTCACCACCCACTGACTTACCATCACTATACTCCAAGAGAT  600

seq1  TAGCATTGCTCTCCAAAAATAATGTAATCAGGTATCTCCATGTCTATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTGCTCTCCAAAAATAATGTAATCAGGTATCTCCATGTCTATTTA  650

seq1  TCATTTTTTCCATGATTTTCAAATGCCCAATTGACAGCACTAGCTAACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTCCATGATTTTCAAATGCCCAATTGACAGCACTAGCTAACTA  700

seq1  TATTTCTTTGAAGGGTTATGTTGTATCTATTTCCTATCTGTGAAATTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTGAAGGGTTATGTTGTATCTATTTCCTATCTGTGAAATTTGT  750

seq1  GGAAATATATCTCGTAGCTCTATGTTAGGCTGCCTTAGTTGTACACTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATATCTCGTAGCTCTATGTTAGGCTGCCTTAGTTGTACACTCAT  800

seq1  GGTCAAGGGAATATTCCTAATTGCCAGTGTCCTGGAAAGAAATCAATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGGGAATATTCCTAATTGCCAGTGTCCTGGAAAGAAATCAATTAA  850

seq1  TTCATCCTAAAGGATGACACTTTCTGCATTACTTCATGGACAAATGTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTAAAGGATGACACTTTCTGCATTACTTCATGGACAAATGTTAC  900

seq1  CTACGATTATTTCTTATTTGAATATAGTATCCCTGATTGAAGAGTAAAAG  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTACGATTATTTCTTATTTGAATATAGTATCCCTGATTG-AGAGTAAAAG  949

seq1  CACTGTTTATGCAATTGGAAACAAATGAAAATCACACACACACTCATATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTATGCAATTGGAAACAAATGAAAATCACACACACACTCATATA  999

seq1  GTCCCCCCTACACACACACATGTGCACAGCATAAACCAAACCAAGTCAAT  1050
      ||||||||||||||||||||||||||||||||||  |||| |||||| ||
seq2  GTCCCCCCTACACACACACATGTGCACAGCATAA--CAAA-CAAGTCCAT  1046

seq1  CCTACTTTTAATGACATCTTCCTTGTACA-TTTTTTACTGAGTACATTCC  1099
       |||||||| |||||||||| |||||||| |||||||||||||||||  |
seq2  -CTACTTTT-ATGACATCTT-CTTGTACATTTTTTTACTGAGTACAT--C  1091

seq1  TACAGATTTAGAGTGTATATTTTATTTTCTAACAGT-ATTTTTCTATATC  1148
      |||||| |||||||||| |  | |  | | | |||| |||||||||||||
seq2  TACAGA-TTAGAGTGTAAA--TCAAGTGCAACCAGTAATTTTTCTATATC  1138

seq1  CCAGAATTTTATACAGTTTCCCTCT-ACAATTTGCACAAAATCCATGTAT  1197
         ||| ||||||||| |||||||| |||||| |  | ||||||| ||||
seq2  ---GAA-TTTATACAG-TTCCCTCTCACAATTGG--CCAAATCCA-GTAT  1180

seq1  --GTTGT  1202
        |||||
seq2  TAGTTGT  1187


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