BAC Information

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BAC

Clone NameB6Ng01-266I15
Chromosome10 (Build37)
Map Location 37,592,248 - 37,692,019
singlet/doubletdoublet
Overlap genenone
Upstream geneHdac2, Marcks, LOC100040846
Downstream geneLOC100040915, Lama4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266I15.bB6Ng01-266I15.g
ACCGA069911GA069912
length1,0911,153
definitionB6Ng01-266I15.b B6Ng01-266I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,690,915 - 37,692,019)(37,592,248 - 37,593,406)
sequence
gaattcaccaatgaatttacatggatttttgatataacttgcatctatca
tgacttccaatggtatcatagttaagatttcattgctgtgaagagatacc
atgatcaaggcaacctttacaaaggcaaacactaaataaggtctatctta
aaattttagaaatttagtccattatcatcatcattgtggagaacatggcg
gcatgcaggcatacatagtgctggaggagccaagagtctacatcttgatc
tgaaggcagccaagagactgtcatcagcactagatagagaagacctcaat
ctccaaccactatgatacactttctctaatgaggacacacatactctaac
aagcccatacctcctaatagtgccactccctgtgggttaaccattcagac
atatgaatctatgcaaaccaacaaaagtagtaacaaggagtctgagttct
agttttcataatctttctttcatctatcttcatgtcgcaagactgtgaaa
attgactgtaaattagatgcttctactcctatttcactagctggaagaac
ttatcccaagaaaacacaggactccatccttaggctccttgtcattggat
tattgccaaagggtattagtaaagagcagcttacaacctgttggaggtct
agaatgagtgtggccatccttgtctcatccctgaagacaactctgggatg
gcagaggctggggagttttagagagggttgtggaaacaagatcattttac
ccagttaccccagactatcagccccatctatgaggagaatgttattctaa
tcactgagataaaaaaaaaaatcaactttaaatttaactaaaaaaaaaaa
aatacacaacaaaaaccaaacaacaacaacacaacaaaaacaaggaaaat
aggtgaaaactttaatcagatttaagcaaatatccatgtctgtgactaac
ttactttcatggatttatttatttgtcaatttgaaaaaaaaagtacttga
gtttttttttttttttttaatttctgagccctaatgatgtgatcaaaaaa
aaaagagaaagaaagaagaaagaaagaagaagaaggaagaa

gaattccagagaggatatggatgctgcttagagcagcttggcctaccaga
gaggactcagtaagcatgaaaggacaaggtacatattcttacacaaaagg
gggatatattaattaagtcagctattaaacattatttaatctctacatat
tgtagatcaatatttcaggtaggaataaattccaagaagataattatgac
attgtttttatagcttgctcttgctggtgaactcctgtctcagccattga
tttggtctttgaaaattggggtttagggttttgaataaagtcagatagtt
tcagaaagctaaagcaatggtcacagtgagtttgtctttatagaagaaac
tgtttttaaaattttccttgacataaaattgctgtatgatttttctagtt
aaatatttgttggatctgttattctaagcattattgttatttaaacaatg
aacacctttttaaaaagtgtgtaaaatattaaattagatgcatttgatcg
aaaggaaatacaaggcaaacatcaggatgggagtatttttttatatgaat
ggaaatgatcacccaggttttccagtttgatttctcattaaatttctgac
atttttgcacactgtgtcccaattctccgacattctcctgaatgaaaaat
gatagagcacacttaatgatttgattatagcctagaattatatctgatct
gtcaagataaatgttaacactgatagagtgtttatggatttgcaggcagt
atttaatttttagaaagaaatgttttatcaaaattattaatcatttatta
ttgccaacttagctgtgtggcaaggtttcattacacagcagtaaaagagg
ttgcatataaactctttgcagactgtcacacaacacccaaagcattatga
agaggaagagttttgatctagtttccacaaagattcataccatccttagt
tttatacaatgaaaatttttttttaacctggagagaaaggatttgcaaat
attatctacactgctaaaaatgaacttcaagggactacatgtttcagaga
tgcatttgtaataatattttgtatttgctgtttgatagatacaacatatt
gtattttgggcatatttttgaaactatagacttacctacggaaatgtagt
cca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_37690915_37692019
seq2: B6Ng01-266I15.b_46_1136 (reverse)

seq1  TTCTTTTTCTTTTTCTTTTTCTTTTTTTCTTTCTTTTTTTTTTTTTTTTT  50
      |||  || ||| ||||| ||  ||| |||||||||| | |||||||||| 
seq2  TTC--TTCCTTCTTCTTCTTTCTTTCTTCTTTCTTTCTCTTTTTTTTTT-  47

seq1  TATTTCACATCATTAGGGCTCAGAAATGTTAAAAAAAAAAAAAAAAAAAA  100
          ||||||||||||||||||||||  |||||||||||||||||||   
seq2  --GATCACATCATTAGGGCTCAGAAA--TTAAAAAAAAAAAAAAAAA---  90

seq1  ACTTCAAGTACTTTTTTTTTTCAAATTGACAAATAAATAAATCCATGAAA  150
         |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  --CTCAAGTAC-TTTTTTTTTCAAATTGACAAATAAATAAATCCATGAAA  137

seq1  GTAAGTTAGTCACAGACATGGATATTTGCTTAAATCTGATTAAAGTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTAGTCACAGACATGGATATTTGCTTAAATCTGATTAAAGTTTTC  187

seq1  ACCTATTTTCCTTGTTTTTGTTGTTGTTGTTGTTGTTTGGTTTTTGTTGT  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACCTATTTTCCTTGTTTTTGTTG-TGTTGTTGTTGTTTGGTTTTTGTTGT  236

seq1  GTATTTTTTTTTTTTTAGTTAAATTTAAAGTTGATTTTTTTTTTTATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTTTTTTTTTAGTTAAATTTAAAGTTGATTTTTTTTTTTATCTC  286

seq1  AGTGATTAGAATAACATTCTCCTCATAGATGGGGCTGATAGTCTGGGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTAGAATAACATTCTCCTCATAGATGGGGCTGATAGTCTGGGGTA  336

seq1  ACTGGGTAAAATGATCTTGTTTCCACAACCCTCTCTAAAACTCCCCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTAAAATGATCTTGTTTCCACAACCCTCTCTAAAACTCCCCAGCC  386

seq1  TCTGCCATCCCAGAGTTGTCTTCAGGGATGAGACAAGGATGGCCACACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATCCCAGAGTTGTCTTCAGGGATGAGACAAGGATGGCCACACTC  436

seq1  ATTCTAGACCTCCAACAGGTTGTAAGCTGCTCTTTACTAATACCCTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGACCTCCAACAGGTTGTAAGCTGCTCTTTACTAATACCCTTTGG  486

seq1  CAATAATCCAATGACAAGGAGCCTAAGGATGGAGTCCTGTGTTTTCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATCCAATGACAAGGAGCCTAAGGATGGAGTCCTGTGTTTTCTTGG  536

seq1  GATAAGTTCTTCCAGCTAGTGAAATAGGAGTAGAAGCATCTAATTTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTTCTTCCAGCTAGTGAAATAGGAGTAGAAGCATCTAATTTACAG  586

seq1  TCAATTTTCACAGTCTTGCGACATGAAGATAGATGAAAGAAAGATTATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTCACAGTCTTGCGACATGAAGATAGATGAAAGAAAGATTATGA  636

seq1  AAACTAGAACTCAGACTCCTTGTTACTACTTTTGTTGGTTTGCATAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGAACTCAGACTCCTTGTTACTACTTTTGTTGGTTTGCATAGATT  686

seq1  CATATGTCTGAATGGTTAACCCACAGGGAGTGGCACTATTAGGAGGTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTCTGAATGGTTAACCCACAGGGAGTGGCACTATTAGGAGGTATG  736

seq1  GGCTTGTTAGAGTATGTGTGTCCTCATTAGAGAAAGTGTATCATAGTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTTAGAGTATGTGTGTCCTCATTAGAGAAAGTGTATCATAGTGGT  786

seq1  TGGAGATTGAGGTCTTCTCTATCTAGTGCTGATGACAGTCTCTTGGCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATTGAGGTCTTCTCTATCTAGTGCTGATGACAGTCTCTTGGCTGC  836

seq1  CTTCAGATCAAGATGTAGACTCTTGGCTCCTCCAGCACTATGTATGCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGATCAAGATGTAGACTCTTGGCTCCTCCAGCACTATGTATGCCTG  886

seq1  CATGCCGCCATGTTCTCCACAATGATGATGATAATGGACTAAATTTCTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCGCCATGTTCTCCACAATGATGATGATAATGGACTAAATTTCTAA  936

seq1  AATTTTAAGATAGACCTTATTTAGTGTTTGCCTTTGTAAAGGTTGCCTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAGATAGACCTTATTTAGTGTTTGCCTTTGTAAAGGTTGCCTTG  986

seq1  ATCATGGTATCTCTTCACAGCAATGAAATCTTAACTATGATACCATTGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGTATCTCTTCACAGCAATGAAATCTTAACTATGATACCATTGGA  1036

seq1  AGTCATGATAGATGCAAGTTATATCAAAAATCCATGTAAATTCATTGGTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGATAGATGCAAGTTATATCAAAAATCCATGTAAATTCATTGGTG  1086

seq1  AATTC  1105
      |||||
seq2  AATTC  1091


seq1: chr10_37592248_37593406
seq2: B6Ng01-266I15.g_68_1220

seq1  GAATTCCAGAGAGGATATGGATGCTGCTTAGAGCAGCTTGGCCTACCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGAGGATATGGATGCTGCTTAGAGCAGCTTGGCCTACCAGA  50

seq1  GAGGACTCAGTAAGCATGAAAGGACAAGGTACATATTCTTACACAAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTCAGTAAGCATGAAAGGACAAGGTACATATTCTTACACAAAAGG  100

seq1  GGGATATATTAATTAAGTCAGCTATTAAACATTATTTAATCTCTACATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATATTAATTAAGTCAGCTATTAAACATTATTTAATCTCTACATAT  150

seq1  TGTAGATCAATATTTCAGGTAGGAATAAATTCCAAGAAGATAATTATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATCAATATTTCAGGTAGGAATAAATTCCAAGAAGATAATTATGAC  200

seq1  ATTGTTTTTATAGCTTGCTCTTGCTGGTGAACTCCTGTCTCAGCCATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTTATAGCTTGCTCTTGCTGGTGAACTCCTGTCTCAGCCATTGA  250

seq1  TTTGGTCTTTGAAAATTGGGGTTTAGGGTTTTGAATAAAGTCAGATAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTTTGAAAATTGGGGTTTAGGGTTTTGAATAAAGTCAGATAGTT  300

seq1  TCAGAAAGCTAAAGCAATGGTCACAGTGAGTTTGTCTTTATAGAAGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGCTAAAGCAATGGTCACAGTGAGTTTGTCTTTATAGAAGAAAC  350

seq1  TGTTTTTAAAATTTTCCTTGACATAAAATTGCTGTATGATTTTTCTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAAAATTTTCCTTGACATAAAATTGCTGTATGATTTTTCTAGTT  400

seq1  AAATATTTGTTGGATCTGTTATTCTAAGCATTATTGTTATTTAAACAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTGTTGGATCTGTTATTCTAAGCATTATTGTTATTTAAACAATG  450

seq1  AACACCTTTTTAAAAAGTGTGTAAAATATTAAATTAGATGCATTTGATCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTTTTTAAAAAGTGTGTAAAATATTAAATTAGATGCATTTGATCG  500

seq1  AAAGGAAATACAAGGCAAACATCAGGATGGGAGTATTTTTTTATATGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATACAAGGCAAACATCAGGATGGGAGTATTTTTTTATATGAAT  550

seq1  GGAAATGATCACCCAGGTTTTCCAGTTTGATTTCTCATTAAATTTCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGATCACCCAGGTTTTCCAGTTTGATTTCTCATTAAATTTCTGAC  600

seq1  ATTTTTGCACACTGTGTCCCAATTCTCCGACATTCTCCTGAATGAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCACACTGTGTCCCAATTCTCCGACATTCTCCTGAATGAAAAAT  650

seq1  GATAGAGCACACTTAATGATTTGATTATAGCCTAGAATTATATCTGATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGCACACTTAATGATTTGATTATAGCCTAGAATTATATCTGATCT  700

seq1  GTCAAGATAAATGTTAACACTGATAGAGTGTTTATGGATTTGCAGGCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGATAAATGTTAACACTGATAGAGTGTTTATGGATTTGCAGGCAGT  750

seq1  ATTTAATTTTTAGAAAGAAATGTTTTATCAAAATTATTAATCATTTATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTTTTAGAAAGAAATGTTTTATCAAAATTATTAATCATTTATTA  800

seq1  TTGCCAACTTAGCTGTGTGGC-AGGTTTCATTACACAGCAGTAAAAGAGG  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGCCAACTTAGCTGTGTGGCAAGGTTTCATTACACAGCAGTAAAAGAGG  850

seq1  TTGCATATAAACTCTTTGCAGACTGTCACACAACACCCAAAGCATTATGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATAAACTCTTTGCAGACTGTCACACAACACCCAAAGCATTATGA  900

seq1  AGAGGAAGAGTTTTGATCTAGTTTCCACAAAGATTCATACCATCCTTAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGAGTTTTGATCTAGTTTCCACAAAGATTCATACCATCCTTAGT  950

seq1  TTTATACAATGAAAA-TTTTTTTTAACCTGGAGAGAAAGGAATTTGCAAA  998
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  TTTATACAATGAAAATTTTTTTTTAACCTGGAGAGAAAGG-ATTTGCAAA  999

seq1  TA-TATCTACACTGCTAAAAAATGAACTTCAAGGGGACTACATGTTTCAG  1047
      || ||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  TATTATCTACACTGCT-AAAAATGAACTTCAA-GGGACTACATGTTTCAG  1047

seq1  AGATGCATTTGTTAATATATTTTGTATTTGCTGTTTGAATTAAGATACAA  1097
      |||||||||||| |  ||||||||||||||||||||||    ||||||||
seq2  AGATGCATTTGTAATAATATTTTGTATTTGCTGTTTGA---TAGATACAA  1094

seq1  CATATTGGTATTTTGGGCATATTTTTGAAAACTATAAGACT--ACTACAG  1145
      |||||| |||||||||||||||||||| ||||||| |||||   |||| |
seq2  CATATT-GTATTTTGGGCATATTTTTG-AAACTAT-AGACTTACCTACGG  1141

seq1  AAAAATGTAGTCCA  1159
        ||||||||||||
seq2  --AAATGTAGTCCA  1153


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