BAC Information

Click to search

BAC

Clone NameB6Ng01-267K06
Chromosome10 (Build37)
Map Location 109,587,679 - 109,689,861
singlet/doubletdoublet
Overlap geneLOC100042506
Upstream geneNav3, LOC100042497, LOC100042502
Downstream geneLOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267K06.bB6Ng01-267K06.g
ACCGA070707GA070708
length1,1491,053
definitionB6Ng01-267K06.b B6Ng01-267K06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,587,679 - 109,588,824)(109,688,811 - 109,689,861)
sequence
gaattcaattcatttacccattaatgtcgtaactttaacaagtttaattt
ttctgagcttcttctaaatggaaataagtgtccctacctcacagtgcttt
tcctgagaaggtggaatggttccacgatttatatatataattctggatta
caagagcccttgataaatgactatgagaaaacatcctttagttcacgtta
aaaatctttatcataaaccaaagaaataacaagtctcaaaggatcaagaa
ttcccaaaggatattcttaacattgtttatgaaggcaagtcttctgaatt
atatatttagaatctaataaaatactgctattgttacaaaacatggaata
tatctttaaacactcatgtacagtaaaacccattattttgtgtggtgagc
acatgttaacaaaaaattgacataaacatttaggagaaaattttatgtga
aggtttcccaatttcaattacatttatgattttatacaagtatttccttc
acgtagaaggcaaaatattttctcaaatattttctagaattatatataga
aacatcatttagaactttccatgtgtttttattattgcctttctttttat
ccattgtcttaaaaagttcaattgtcattgcaacagtggatcttctaagt
ggtaactaggaataaaaacatctacgacaaaatgaaattactattcagcg
agaatgttcgtaagataatgaaaaagaaaaggagagtccaactctaaaat
gccacaccaccacgatttccttgttttatagattcccacatatattttgt
gtgtttgagaatatgctaattatcatcaattaaagataaaaatattacat
ttaaaatatgacctctttttgaaaatgttgtcgtatctgcctacttttat
ttgctgtggtccccagtatatattgttttgcatagttagaaatgtctgta
attccagcatttggcagggttaactgggaggagtggagtataaagttgaa
gtgatactgggctaagaactgacttccagatctgcctggagtacagaatt
attatatttctttgattgtatcaggactgattcgcatagtttaagaactg
aacaaaacatttcagccagagtaagtactgttgttaggctgattcataa

gaattcttgatgtctgtttctaggttgggtatagggcaggtaccaaagca
aagagctcccataccagcattttctcaagacctcattgaacgtctgagaa
tttgagaatctaaaatgtggttatatatttagtatataaccttttatttt
taatgtttctcatttgatttttgcttggaagaagttgtggatggaatccg
atacatggggcagaacaggggataagcatgtgttttaaagatgttcaaat
gtcgaaattaaatacaaagtatgtcttgcttgcttgctttcttgtttgtt
ttttccagcaagtaccacacaaaacaaagcttctgggtttcacttgcttt
cttttcttattactggagaaaatagcttcaattccataattacataccag
gaaatgagtgatatccattcaaaatgaagaagtaaaatttgattaaaatc
attttgtatacttctccttttattacatttttattaaagtgatgatataa
tagcaatacaagttatttaaagtaataaaatattattttattaccataat
gcaagtatttctgttttctattttctattccctatttgtgtacccattat
caaagacctagggcatattaagacttaatacatgtttccttttgtttgtt
tgacttttttttctgagacaggatttctctatatagccctgactgtcctg
gaaatcgctctgtagaccaggctggcctcaaactcagaaatctgcctgcc
tctgcctcccaagtgctggagtcaaaggcgtgcaccaccacgtccggctt
aatccatgtttcctataggcatcacaatgcatgacattacatttgtttgt
tcaaggagaaacggaatgtttaagataaaaatgaaaaccaaaaattcaga
gttcataaaccttccatagaaacctcaggacaatgtcagggtagttagtg
acaggacttacaggctgagatgatctcttgccataacaactagaaaacaa
gagatgattattttcatatgtctgcctaagtccactctcatagtgataaa
ttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_109587679_109588824
seq2: B6Ng01-267K06.b_44_1192

seq1  GAATTCAATTCATTTACCCATTAATGTCGTAACTTTAACAAGTTTAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCATTTACCCATTAATGTCGTAACTTTAACAAGTTTAATTT  50

seq1  TTCTGAGCTTCTTCTAAATGGAAATAAGTGTCCCTACCTCACAGTGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGCTTCTTCTAAATGGAAATAAGTGTCCCTACCTCACAGTGCTTT  100

seq1  TCCTGAGAAGGTGGAATGGTTCCACGATTTATATATATAATTCTGGATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGAAGGTGGAATGGTTCCACGATTTATATATATAATTCTGGATTA  150

seq1  CAAGAGCCCTTGATAAATGACTATGAGAAAACATCCTTTAGTTCACGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCCCTTGATAAATGACTATGAGAAAACATCCTTTAGTTCACGTTA  200

seq1  AAAATCTTTATCATAAACCAAAGAAATAACAAGTCTCAAAGGATCAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTTATCATAAACCAAAGAAATAACAAGTCTCAAAGGATCAAGAA  250

seq1  TTCCCAAAGGATATTCTTAACATTGTTTATGAAGGCAAGTCTTCTGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAAGGATATTCTTAACATTGTTTATGAAGGCAAGTCTTCTGAATT  300

seq1  ATATATTTAGAATCTAATAAAATACTGCTATTGTTACAAAACATGGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTAGAATCTAATAAAATACTGCTATTGTTACAAAACATGGAATA  350

seq1  TATCTTTAAACACTCATGTACAGTAAAACCCATTATTTTGTGTGGTGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTAAACACTCATGTACAGTAAAACCCATTATTTTGTGTGGTGAGC  400

seq1  ACATGTTAACAAAAAATTGACATAAACATTTAGGAGAAAATTTTATGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTAACAAAAAATTGACATAAACATTTAGGAGAAAATTTTATGTGA  450

seq1  AGGTTTCCCAATTTCAATTACATTTATGATTTTATACAAGTATTTCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCCCAATTTCAATTACATTTATGATTTTATACAAGTATTTCCTTC  500

seq1  ACGTAGAAGGCAAAATATTTTCTCAAATATTTTCTAGAATTATATATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGAAGGCAAAATATTTTCTCAAATATTTTCTAGAATTATATATAGA  550

seq1  AACATCATTTAGAACTTTCCATGTGTTTTTATTATTGCCTTTCTTTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATTTAGAACTTTCCATGTGTTTTTATTATTGCCTTTCTTTTTAT  600

seq1  CCATTGTCTTAAAAAGTTCAATTGTCATTGCAACAGTGGATCTTCTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTCTTAAAAAGTTCAATTGTCATTGCAACAGTGGATCTTCTAAGT  650

seq1  GGTAACTAGGAATAAAAACATCTACGACAAAATGAAATTACTATTCAGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTAGGAATAAAAACATCTACGACAAAATGAAATTACTATTCAGCG  700

seq1  AGAATGTTCGTAAGATAATGAAAAAGAAAAGGAGAGTCCAACTCTAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTCGTAAGATAATGAAAAAGAAAAGGAGAGTCCAACTCTAAAAT  750

seq1  GCCACACCACCACGATTTCCTTGTTTTATAGATTCCCACATATATTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACCACCACGATTTCCTTGTTTTATAGATTCCCACATATATTTTGT  800

seq1  GTGTTTGAGAATATGCTAATTATCATCAATTAAAGATAAAAATATTACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGAGAATATGCTAATTATCATCAATTAAAGATAAAAATATTACAT  850

seq1  TTAAAATATGACCTCTTTTTGAAAATGTTGTCGTATCTGCCTACTTTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATGACCTCTTTTTGAAAATGTTGTCGTATCTGCCTACTTTTAT  900

seq1  TTGCTGTGGTCCCCAGTATATATTGTTTTGCATAGTTAGAAATGTCTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGGTCCCCAGTATATATTGTTTTGCATAGTTAGAAATGTCTGTA  950

seq1  ATTCCAGCATTTGGCAGGGTTAACTGGGA-GAGT-GAGTATAAAGTTGAA  998
      ||||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  ATTCCAGCATTTGGCAGGGTTAACTGGGAGGAGTGGAGTATAAAGTTGAA  1000

seq1  GTGATACTGGGCTAAGAACTGACTTCCAGATCTGCCTGGAGTACAGATTA  1048
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  GTGATACTGGGCTAAGAACTGACTTCCAGATCTGCCTGGAGTACAGA--A  1048

seq1  TTATTA-ATTTCTTTTGATTTGTTATCAAGACTGATTCGCATAGTTTAAG  1097
      |||||| ||||| |||||||   ||||| |||||||||||||||||||||
seq2  TTATTATATTTC-TTTGATT--GTATCAGGACTGATTCGCATAGTTTAAG  1095

seq1  ACATG---ACAACATTTAAAGCAGAGAAATTACTGT--GTAGGCTGATTC  1142
      |  ||   | ||||||| |  ||||| || ||||||   |||||||||||
seq2  AACTGAACAAAACATTTCAGCCAGAGTAAGTACTGTTGTTAGGCTGATTC  1145

seq1  ATAA  1146
      ||||
seq2  ATAA  1149


seq1: chr10_109688811_109689861
seq2: B6Ng01-267K06.g_68_1120 (reverse)

seq1  AAATTTATCACTATGAGAGT-GAC-TAGGCAGACATATGAAAATAATCAT  48
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  AAATTTATCACTATGAGAGTGGACTTAGGCAGACATATGAAAATAATCAT  50

seq1  CTCTTGTTTTCTAGTTGTTATGGCAAGAGATCATCTCAGCCTGTAAGTCC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTTTCTAGTTGTTATGGCAAGAGATCATCTCAGCCTGTAAGTCC  100

seq1  TGTCACTAACTACCCTGACATTGTCCTGAGGTTTCTATGGAAGGTTTATG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTAACTACCCTGACATTGTCCTGAGGTTTCTATGGAAGGTTTATG  150

seq1  AACTCTGAA-TTTTGGTTTTCATTTTTAATCTTAAACATTCCGTTTCTCC  197
      ||||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  AACTCTGAATTTTTGGTTTTCATTTTT-ATCTTAAACATTCCGTTTCTCC  199

seq1  TTGAACAAACAAATGTAATGTCATGCATTGTGATGCCTATAGGAAACATG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAAACAAATGTAATGTCATGCATTGTGATGCCTATAGGAAACATG  249

seq1  GATTAAGCCGGACGTGGTGGTGCACGCCTTTGACTCCAGCACTTGGGAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGCCGGACGTGGTGGTGCACGCCTTTGACTCCAGCACTTGGGAGG  299

seq1  CAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGCGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGCGA  349

seq1  TTTCCAGGACAGTCAGGGCTATATAGAGAAATCCTGTCTCAGAAAAAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGACAGTCAGGGCTATATAGAGAAATCCTGTCTCAGAAAAAAAA  399

seq1  GTCAAACAAACAAAAGGAAACATGTATTAAGTCTTAATATGCCCTAGGTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACAAACAAAAGGAAACATGTATTAAGTCTTAATATGCCCTAGGTC  449

seq1  TTTGATAATGGGTACACAAATAGGGAATAGAAAATAGAAAACAGAAATAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAATGGGTACACAAATAGGGAATAGAAAATAGAAAACAGAAATAC  499

seq1  TTGCATTATGGTAATAAAATAATATTTTATTACTTTAAATAACTTGTATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTATGGTAATAAAATAATATTTTATTACTTTAAATAACTTGTATT  549

seq1  GCTATTATATCATCACTTTAATAAAAATGTAATAAAAGGAGAAGTATACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTATATCATCACTTTAATAAAAATGTAATAAAAGGAGAAGTATACA  599

seq1  AAATGATTTTAATCAAATTTTACTTCTTCATTTTGAATGGATATCACTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTTTAATCAAATTTTACTTCTTCATTTTGAATGGATATCACTCA  649

seq1  TTTCCTGGTATGTAATTATGGAATTGAAGCTATTTTCTCCAGTAATAAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGTATGTAATTATGGAATTGAAGCTATTTTCTCCAGTAATAAGA  699

seq1  AAAGAAAGCAAGTGAAACCCAGAAGCTTTGTTTTGTGTGGTACTTGCTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGCAAGTGAAACCCAGAAGCTTTGTTTTGTGTGGTACTTGCTGG  749

seq1  AAAAAACAAACAAGAAAGCAAGCAAGCAAGACATACTTTGTATTTAATTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAACAAGAAAGCAAGCAAGCAAGACATACTTTGTATTTAATTT  799

seq1  CGACATTTGAACATCTTTAAAACACATGCTTATCCCCTGTTCTGCCCCAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACATTTGAACATCTTTAAAACACATGCTTATCCCCTGTTCTGCCCCAT  849

seq1  GTATCGGATTCCATCCACAACTTCTTCCAAGCAAAAATCAAATGAGAAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCGGATTCCATCCACAACTTCTTCCAAGCAAAAATCAAATGAGAAAC  899

seq1  ATTAAAAATAAAAGGTTATATACTAAATATATAACCACATTTTAGATTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATAAAAGGTTATATACTAAATATATAACCACATTTTAGATTCT  949

seq1  CAAATTCTCAGACGTTCAATGAGGTCTTGAGAAAATGCTGGTATGGGAGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTCAGACGTTCAATGAGGTCTTGAGAAAATGCTGGTATGGGAGC  999

seq1  TCTTTGCTTTGGTACCTGCCCTATACCCAACCTAGAAACAGACATCAAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTTTGGTACCTGCCCTATACCCAACCTAGAAACAGACATCAAGA  1049

seq1  ATTC  1051
      ||||
seq2  ATTC  1053


| Home | SequenceCutter | Blast | Download |