BAC Information

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BAC

Clone NameB6Ng01-268C18
Chromosome10 (Build37)
Map Location 36,696,635 - 36,815,569
singlet/doubletdoublet
Overlap geneHdac2
Upstream geneLOC667860, Hs3st5
Downstream geneMarcks, LOC100040846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268C18.bB6Ng01-268C18.g
ACCGA071102GA071103
length1,0581,066
definitionB6Ng01-268C18.b B6Ng01-268C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,696,635 - 36,697,676)(36,814,499 - 36,815,569)
sequence
gaattctctgcagagaattcccttcacgtctgacttgattacagaaaccc
tcttcttgttagtttataaaggtagcagcaatctttaattgtctttatta
aattctaaacaagaggagcaagtaaagtgacttttgtaccaagaaagtgc
atgactttcagacgcatgcagggttgggttggtggagaacccggccagta
ggattggggctcgaatagtatactagtcttatgttagtgcttttaacttg
gttggtaggggaggagatcaggaaaggaggaggttaacggggcactaggc
acccagagagcctcttgacaactcatgtgagtgttttcctgctaagactg
tgtgcttagtgaagaatacttctgaagattgaatatggttttctccgtgt
gtgctgcagtcttcagaattgtacttgtagggtctctgtgccactgatct
gtgaactttcagataggagcgtatgaactatccctaaacctcacaagaga
aatcagagttgttcttagtggactgtgactactgactggtcatcataact
cccagaaacacatttcagaatgttggctaatctcttactaaactaaaaga
caaagatcggtaaatgatataaagctaattatgtgtctacactgagatcc
tttctgacctctttcccgtttttctcaaagtgtaattgagcagatggggc
tacatttagttctaattgcaaggctcaggcttttaatactttatctagaa
atataaactttgcctggtttagagtgaagcttgggaccaatcatgtagtg
cctttctaatgtatagtgtataaacagaatttgaatgtatgcataattta
tgtattagacaccaatttgctttatgcttttgtttattttctctgataga
gattaatcagaaatcaaaaatgtttgggagacatagtctagaggaaaagc
tacgtggcaacaaaaaatataggaatataacaattactaataattattat
tttcccagtgtactcctaaagtttcttacagataccaagagtactacaga
gtggccat

gaattctagtttgaattttaaacatgcttctaatttggtttttgctgtat
tgtcatcgtaagaactctttgaacttttccccatctttcagagcttttca
ttgtgtgtagttgttttgataggcttctttctcttcctcctccttctttt
tcttctctttttgatgttttgttttcctaagacaagttcttgagtatccc
aggttggcctcaaacttttatatatctgaggatgaccttgaacgcctgat
ctttcggcctccaccttccaaaggctgagatcaccagcgaaggcctccat
gctttcactgtttctgtttaacccttagaaagttaacaggggtttttctg
ctccagaatgctcaggaagcaggaagtaccttgggctcatgtagtcatga
gggtttgggatttcttttctttctttctttctttctctggtgtttaagat
gaaatgaatagtgtatataatacttgatagtgtaggatactcgcattcag
cagcccccaacccctgcccagttttcagagacgtgagccctggctctggg
agagttaacttgtctgtaacagccaaagctatttagtatttaaataaaag
attgtatgaataggaatacacaaacgacaaccaaaaagcacagcaggctg
agcagtgcagactactgctcatggtgtctcagcaatgcctaaagcctgag
gagaatttcaaacgtgattctctatgtcactgattttttttaactgatta
ttatgtgcaaagagacacagacatgatgacagacattgcacttccatctt
cagagcaaaagaccaaagaaacttaagtaagcccttctgatggactattt
accaacctttgtcacaacaaaaaatggaagagattagattaaagaagcaa
caatgtccaagtgtatagttaagacatcacaaacatgatgttagtaccag
tacatatgtatgtgtgtacttgtaaagtatgtaaaatcattttaacatat
ttttattgtgtgcatagtagcacacagctgtaagcccaatactagagctc
agtagaaagaaaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_36696635_36697676
seq2: B6Ng01-268C18.b_47_1104

seq1  GAATTCTCTGCAGAGAATTCCCTTCACGTCTGACTTGATTACAGAAACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCAGAGAATTCCCTTCACGTCTGACTTGATTACAGAAACCC  50

seq1  TCTTCTTGTTAGTTTATAAAGGTAGCAGCAATCTTTAATTGTCTTTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGTTAGTTTATAAAGGTAGCAGCAATCTTTAATTGTCTTTATTA  100

seq1  AATTCTAAACAAGAGGAGCAAGTAAAGTGACTTTTGTACCAAGAAAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAAACAAGAGGAGCAAGTAAAGTGACTTTTGTACCAAGAAAGTGC  150

seq1  ATGACTTTCAGACGCATGCAGGGTTGGGTTGGTGGAGAACCCGGCCAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTCAGACGCATGCAGGGTTGGGTTGGTGGAGAACCCGGCCAGTA  200

seq1  GGATTGGGGCTCGAATAGTATACTAGTCTTATGTTAGTGCTTTTAACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGGGCTCGAATAGTATACTAGTCTTATGTTAGTGCTTTTAACTTG  250

seq1  GTTGGTAGGGGAGGAGATCAGGAAAGGAGGAGGTTAACGGGGCACTAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAGGGGAGGAGATCAGGAAAGGAGGAGGTTAACGGGGCACTAGGC  300

seq1  ACCCAGAGAGCCTCTTGACAACTCATGTGAGTGTTTTCCTGCTAAGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAGAGCCTCTTGACAACTCATGTGAGTGTTTTCCTGCTAAGACTG  350

seq1  TGTGCTTAGTGAAGAATACTTCTGAAGATTGAATATGGTTTTCTCCGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTAGTGAAGAATACTTCTGAAGATTGAATATGGTTTTCTCCGTGT  400

seq1  GTGCTGCAGTCTTCAGAATTGTACTTGTAGGGTCTCTGTGCCACTGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCAGTCTTCAGAATTGTACTTGTAGGGTCTCTGTGCCACTGATCT  450

seq1  GTGAACTTTCAGATAGGAGCGTATGAACTATCCCTAAACCTCACAAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTTTCAGATAGGAGCGTATGAACTATCCCTAAACCTCACAAGAGA  500

seq1  AATCAGAGTTGTTCTTAGTGGACTGTGACTACTGACTGGTCATCATAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAGTTGTTCTTAGTGGACTGTGACTACTGACTGGTCATCATAACT  550

seq1  CCCAGAAACACATTTCAGAATGTTGGCTAATCTCTTACTAAACTAAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAACACATTTCAGAATGTTGGCTAATCTCTTACTAAACTAAAAGA  600

seq1  CAAAGATCGGTAAATGATATAAAGCTAATTATGTGTCTACACTGAGATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATCGGTAAATGATATAAAGCTAATTATGTGTCTACACTGAGATCC  650

seq1  TTTCTGACCTCTTTCCCGTTTTTCTCAAAGTGTAATTGAGCAGATGGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGACCTCTTTCCCGTTTTTCTCAAAGTGTAATTGAGCAGATGGGGC  700

seq1  TACATTTAGTTCTAATTGCAAGGCTCAGGCTTTTAATACTTTATCTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTAGTTCTAATTGCAAGGCTCAGGCTTTTAATACTTTATCTAGAA  750

seq1  ATATAAACTTTGCCTGGTTTAGAGTGAAGCTTGGGACCAATCATGTAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAACTTTGCCTGGTTTAGAGTGAAGCTTGGGACCAATCATGTAGTG  800

seq1  CC-TTCTAATGTATAGTGTAT-AACAGAA-TTGAATGTATGCATAATTTA  847
      || |||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  CCTTTCTAATGTATAGTGTATAAACAGAATTTGAATGTATGCATAATTTA  850

seq1  TGTAATTAGACACCAA-TTGCTTTATGC-TTTGTTTATTTTCTCTGATAG  895
      ||| |||||||||||| ||||||||||| |||||||||||||||||||||
seq2  TGT-ATTAGACACCAATTTGCTTTATGCTTTTGTTTATTTTCTCTGATAG  899

seq1  AGA-TAATCAG-AATC-AAAATGTTT-GGAGACATAGTCCAGAGG-AAAG  940
      ||| ||||||| |||| ||||||||| |||||||||||| ||||| ||||
seq2  AGATTAATCAGAAATCAAAAATGTTTGGGAGACATAGTCTAGAGGAAAAG  949

seq1  C-ACGTGGCAAC-AAAAATATA-GAATATAACAATTACT-ATAATTAT--  984
      | |||||||||| ||||||||| |||||||||||||||| ||||||||  
seq2  CTACGTGGCAACAAAAAATATAGGAATATAACAATTACTAATAATTATTA  999

seq1  ATTTCCCAGTGTACTCCT-AAGTTTCTTAACAGATA-CAAGAGTACTACA  1032
       ||||||||||||||||| ||||||||| ||||||| |||||||||||||
seq2  TTTTCCCAGTGTACTCCTAAAGTTTCTT-ACAGATACCAAGAGTACTACA  1048

seq1  GAGTGGCCAT  1042
      ||||||||||
seq2  GAGTGGCCAT  1058


seq1: chr10_36814499_36815569
seq2: B6Ng01-268C18.g_62_1127 (reverse)

seq1  TCCTCTTTCTTCTACTTGAGCTTCCTAAGTATTGGGCTTACAGCTGTGTG  50
      |||| ||  |||||| ||||||  || |||||||||||||||||||||||
seq2  TCCTTTTCTTTCTAC-TGAGCT--CT-AGTATTGGGCTTACAGCTGTGTG  46

seq1  CTACTATGCACAACAATAAAAATATGTTAAAATGATTTTACATACTTTAC  100
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTACTATGCAC-ACAATAAAAATATGTTAAAATGATTTTACATACTTTAC  95

seq1  AAGTACACACATACATATGTACTGGTACTAACATCATGTTTGTGATGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACACACATACATATGTACTGGTACTAACATCATGTTTGTGATGTCT  145

seq1  TAACTATACACTTGGACATTGTTGCTTCCTTAATCTAATCTCTTCCATTT  200
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAACTATACACTTGGACATTGTTGCTTCTTTAATCTAATCTCTTCCATTT  195

seq1  TTTGTTGTGACAAAGGTTGGTAAATAGTCCATCAGAAGGGCTTACTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTGACAAAGGTTGGTAAATAGTCCATCAGAAGGGCTTACTTAAG  245

seq1  TTTCTTTGGTCTTTTGCTCTGAAGATGGAAGTGCAATGTCTGTCATCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGGTCTTTTGCTCTGAAGATGGAAGTGCAATGTCTGTCATCATG  295

seq1  TCTGTGTCTCTTTGCACATAATAATCAGTTAAAAAAAATCAGTGACATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCTCTTTGCACATAATAATCAGTTAAAAAAAATCAGTGACATAG  345

seq1  AGAATCACGTTTGAAATTCTCCTCAGGCTTTAGGCATTGCTGAGACACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCACGTTTGAAATTCTCCTCAGGCTTTAGGCATTGCTGAGACACCA  395

seq1  TGAGCAGTAGTCTGCACTGCTCAGCCTGCTGTGCTTTTTGGTTGTCGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGTAGTCTGCACTGCTCAGCCTGCTGTGCTTTTTGGTTGTCGTTT  445

seq1  GTGTATTCCTATTCATACAATCTTTTATTTAAATACTAAATAGCTTTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTCCTATTCATACAATCTTTTATTTAAATACTAAATAGCTTTGGC  495

seq1  TGTTACAGACAAGTTAACTCTCCCAGAGCCAGGGCTCACGTCTCTGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAGACAAGTTAACTCTCCCAGAGCCAGGGCTCACGTCTCTGAAAA  545

seq1  CTGGGCAGGGGTTGGGGGCTGCTGAATGCGAGTATCCTACACTATCAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGGGGTTGGGGGCTGCTGAATGCGAGTATCCTACACTATCAAGT  595

seq1  ATTATATACACTATTCATTTCATCTTAAACACCAGAGAAAGAAAGAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATACACTATTCATTTCATCTTAAACACCAGAGAAAGAAAGAAAGA  645

seq1  AAGAAAAGAAATCCCAAACCCTCATGACTACATGAGCCCAAGGTACTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAATCCCAAACCCTCATGACTACATGAGCCCAAGGTACTTCC  695

seq1  TGCTTCCTGAGCATTCTGGAGCAGAAAAACCCCTGTTAACTTTCTAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTGAGCATTCTGGAGCAGAAAAACCCCTGTTAACTTTCTAAGGG  745

seq1  TTAAACAGAAACAGTGAAAGCATGGAGGCCTTCGCTGGTGATCTCAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAGAAACAGTGAAAGCATGGAGGCCTTCGCTGGTGATCTCAGCCT  795

seq1  TTGGAAGGTGGAGGCCGAAAGATCAGGCGTTCAAGGTCATCCTCAGATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGGTGGAGGCCGAAAGATCAGGCGTTCAAGGTCATCCTCAGATAT  845

seq1  ATAAAAGTTTGAGGCCAACCTGGGATACTCAAGAACTTGTCTTAGGAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTTTGAGGCCAACCTGGGATACTCAAGAACTTGTCTTAGGAAAA  895

seq1  CAAAACATCAAAAAGAGAAGAAAAAGAAGGAGGAGGAAGAGAAAGAAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATCAAAAAGAGAAGAAAAAGAAGGAGGAGGAAGAGAAAGAAGCC  945

seq1  TATCAAAACAACTACACACAATGAAAAGCTCTGAAAGATGGGGAAAAGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAACAACTACACACAATGAAAAGCTCTGAAAGATGGGGAAAAGTT  995

seq1  CAAAGAGTTCTTACGATGACAATACAGCAAAAACCAAATTAGAAGCATGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGTTCTTACGATGACAATACAGCAAAAACCAAATTAGAAGCATGT  1045

seq1  TTAAAATTCAAACTAGAATTC  1071
      |||||||||||||||||||||
seq2  TTAAAATTCAAACTAGAATTC  1066


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