BAC Information

Click to search

BAC

Clone NameB6Ng01-268E13
Chromosome10 (Build37)
Map Location 112,953,651 - 113,088,968
singlet/doubletdoublet
Overlap geneLOC100042655
Upstream geneLOC100042639, 4921506J03Rik
Downstream geneLOC100042666, Trhde
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268E13.bB6Ng01-268E13.g
ACCGA071183GA071184
length1,1831,010
definitionB6Ng01-268E13.b B6Ng01-268E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,953,651 - 112,954,645)(113,088,416 - 113,088,968)
sequence
gaattcactgatcttactatgttccccatcatcctgaagcagcttgtctg
ctagaaagatggaatggccttttaaagacacagttacagtgtcaattagg
tggcaacagcaggaagggctggggcagagttcttcagaaggcagcatatg
ctttgaatcagctttcaatatacggtgcagttcccccatagccaggatcc
atgtgtccagggatcaaggagtggaaaaggaaatagttctacttactcaa
tcctagtgaccctctaggaaaatttttgcttcctgtccccataactctag
gttctgctggcctagaggttttggttccagaggggggagtgcttgtacca
gagccacaacaaacattccattgaacttgaagctccgactcccccctggt
cattttgggctttgaatgcccttaaaccaacaggctaagaaagcaataac
atccaagcaggatgacaaaggacacagacccatcaagaatgaaggtatga
gtcaatccgttaagaaaagagccaagacctgctgaggtgcttgccaaagg
tgaaggaaatacgaaatgggtagtagaggaacgtagttataaataccaat
taaggccacataaccagtagcagaaaggaggactataaagtaatatgaat
gcttctgtcttattttgcttacaaatacatttgtctattatctaatttcc
tagcatcaattggtatttatgttgagacactaaaagaatgttcccaaggg
acattaccccattgtaaatttacaaatgcatttgcgattgtatgaggaat
agttatatcatgttaggcatattcacgaccttgatattatttcatgtgga
catgaggtattatttgtgtcaagttgacaaacggtagattgtagtggcta
ttcctggttgtgggcttgactatatctggaatgaactacaatccagaaat
agaaaggctcaccagtgatcctaatctgggaggctaggaaatagaaggtt
ctgacctggatcttgctatggagatattgaggcatagtggctatgaattc
cagaatttaagaaagggagatcttctgagttcaagtcatcttggattaaa
aggtgtgggtggcacacacttaattctggctcacacgtctctgctctgga
gacctacattcaggaatttggagagagactctc

gaattcacgatgactactactactactgtagaataaaagtatatatattt
cttaaagttccatactagccttggatacacatggaaacactggctcaaaa
aaataatttaaaaaagcaacaacagcaaaatgaaatctggctcaatctag
tagcataaaaagaatgcaaataacatttttttttaaaattaaactactaa
ttccagcatcatttccttttataaacaagtaaatttctaaatatgtgttc
atatatatatgtactaaagacttgtttgtggcaaattttaagttttattg
tggtgttgccgaaaaggacacattagttacttcgattatttttgcattgt
aaatatttgttcttatgtcctaggacatggtctattttattaaaagcttc
tctgtgatgctgatagtgtgtattttttaatgcttgtgggaatatcttgt
agatatctattaaaccatagaggtatgatgtcactaaattctgatgtttc
actgtttatttcttgtccagactaactgtctactagaaaaaaatggggca
ttgatcattgaaatcacatactactaatgaatttacattactctgagtct
ttaaattcagtagtaggtttttgtttgtttgtttgtttgcttgcttgctt
aataaatttgggtgccccggagttttcagcatataggtttagtttattat
tctcttcctggttaattaaagttagctctgtcaactttatctcttctcga
tttagtttgaagtctgttttgtcaaatatcagcacagagatgcctgcttc
attcccagattcatttgcttggagtacttctaattatctattcacaccaa
agcaatgtctacctttcaaactataatgtgcttcttgtagtcaacaaata
tatgcatattactttctgatctgtttgaccagtctgtttcttttgattgg
agattggggacattgatattgaaattactatttaaggggtatttggtatt
gtcatttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_112953651_112954645
seq2: B6Ng01-268E13.b_232_1230

seq1  CCCATAGCCAGGATCCATGTGTCCAGGGATCAAGGAGTGGAAAAGGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGCCAGGATCCATGTGTCCAGGGATCAAGGAGTGGAAAAGGAAAT  50

seq1  AGTTCTACTTACTCAATCCTAGTGACCCTCTAGGAAAATTTTTGCTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTACTTACTCAATCCTAGTGACCCTCTAGGAAAATTTTTGCTTCCT  100

seq1  GTCCCCATAACTCTAGGTTCTGCTGGCCTAGAGGTTTTGGTTCCAGAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCATAACTCTAGGTTCTGCTGGCCTAGAGGTTTTGGTTCCAGAGGG  150

seq1  GGGAGTGCTTGTACCAGAGCCACAACAAACATTCCATTGAACTTGAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGCTTGTACCAGAGCCACAACAAACATTCCATTGAACTTGAAGCT  200

seq1  CCGACTCCCCCCTGGTCATTTTGGGCTTTGAATGCCCTTAAACCAACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTCCCCCCTGGTCATTTTGGGCTTTGAATGCCCTTAAACCAACAGG  250

seq1  CTAAGAAAGCAATAACATCCAAGCAGGATGACAAAGGACACAGACCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAAGCAATAACATCCAAGCAGGATGACAAAGGACACAGACCCATC  300

seq1  AAGAATGAAGGTATGAGTCAATCCGTTAAGAAAAGAGCCAAGACCTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAAGGTATGAGTCAATCCGTTAAGAAAAGAGCCAAGACCTGCTG  350

seq1  AGGTGCTTGCCAAAGGTGAAGGAAATACGAAATGGGTAGTAGAGGAACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTTGCCAAAGGTGAAGGAAATACGAAATGGGTAGTAGAGGAACGT  400

seq1  AGTTATAAATACCAATTAAGGCCACATAACCAGTAGCAGAAAGGAGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAAATACCAATTAAGGCCACATAACCAGTAGCAGAAAGGAGGACT  450

seq1  ATAAAGTAATATGAATGCTTCTGTCTTATTTTGCTTACAAATACATTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTAATATGAATGCTTCTGTCTTATTTTGCTTACAAATACATTTGT  500

seq1  CTATTATCTAATTTCCTAGCATCAATTGGTATTTATGTTGAGACACTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATCTAATTTCCTAGCATCAATTGGTATTTATGTTGAGACACTAAA  550

seq1  AGAATGTTCCCAAGGGACATTACCCCATTGTAAATTTACAAATGCATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTCCCAAGGGACATTACCCCATTGTAAATTTACAAATGCATTTG  600

seq1  CGATTGTATGAGGAATAGTTATATCATGTTAGGCATATTCACGACCTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTGTATGAGGAATAGTTATATCATGTTAGGCATATTCACGACCTTGA  650

seq1  TATTATTTCATGTGGACATGAGGTATTATTTGTGTCAAGTTGACAAACGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTCATGTGGACATGAGGTATTATTTGTGTCAAGTTGACAAACGG  700

seq1  TAGATTGTAGTGGCTATTCCTGGTTGTGGGCTTGACTATATCTGGAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGTAGTGGCTATTCCTGGTTGTGGGCTTGACTATATCTGGAATGA  750

seq1  ACTACAATCCAGAAATAG-AAGGCTCACCAGTGATCCTAATCT-GGAGGC  798
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  ACTACAATCCAGAAATAGAAAGGCTCACCAGTGATCCTAATCTGGGAGGC  800

seq1  TAGGAAATAGAAGGTTCTGACCTGGATCTTGCTATGGAGATATTGAGGCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATAGAAGGTTCTGACCTGGATCTTGCTATGGAGATATTGAGGCA  850

seq1  TAGTGGCTATGAATTCCAGAA-TTAAGAAAGGGAGATC-TCTGAGTTCAA  896
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  TAGTGGCTATGAATTCCAGAATTTAAGAAAGGGAGATCTTCTGAGTTCAA  900

seq1  GGTCATCTGGGATT-AAAGGTGT-GGTGGCACACACCTTTAATCTGGGCT  944
       ||||||| ||||| |||||||| ||||||||||| ||| | |||||   
seq2  -GTCATCTTGGATTAAAAGGTGTGGGTGGCACACA-CTTAATTCTGGCTC  948

seq1  ACACCT-TCTG--CTGGAGACCTACA-TCAGGATTTTGGAAGAAAGAAGA  990
      |||| | ||||  ||||||||||||| |||||| ||||| |||    |||
seq2  ACACGTCTCTGCTCTGGAGACCTACATTCAGGAATTTGG-AGA---GAGA  994

seq1  CTCTC  995
      |||||
seq2  CTCTC  999


seq1: chr10_113088416_113088968
seq2: B6Ng01-268E13.g_65_617 (reverse)

seq1  CAATGCCCCATTTTTTTCTAGTAGACAGTTAGTCTGGACAAGAAATAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCCCATTTTTTTCTAGTAGACAGTTAGTCTGGACAAGAAATAAAC  50

seq1  AGTGAAACATCAGAATTTAGTGACATCATACCTCTATGGTTTAATAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAACATCAGAATTTAGTGACATCATACCTCTATGGTTTAATAGATA  100

seq1  TCTACAAGATATTCCCACAAGCATTAAAAAATACACACTATCAGCATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAGATATTCCCACAAGCATTAAAAAATACACACTATCAGCATCAC  150

seq1  AGAGAAGCTTTTAATAAAATAGACCATGTCCTAGGACATAAGAACAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCTTTTAATAAAATAGACCATGTCCTAGGACATAAGAACAAATA  200

seq1  TTTACAATGCAAAAATAATCGAAGTAACTAATGTGTCCTTTTCGGCAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATGCAAAAATAATCGAAGTAACTAATGTGTCCTTTTCGGCAACA  250

seq1  CCACAATAAAACTTAAAATTTGCCACAAACAAGTCTTTAGTACATATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATAAAACTTAAAATTTGCCACAAACAAGTCTTTAGTACATATATA  300

seq1  TATGAACACATATTTAGAAATTTACTTGTTTATAAAAGGAAATGATGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACACATATTTAGAAATTTACTTGTTTATAAAAGGAAATGATGCTG  350

seq1  GAATTAGTAGTTTAATTTTAAAAAAAAATGTTATTTGCATTCTTTTTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGTAGTTTAATTTTAAAAAAAAATGTTATTTGCATTCTTTTTATG  400

seq1  CTACTAGATTGAGCCAGATTTCATTTTGCTGTTGTTGCTTTTTTAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAGATTGAGCCAGATTTCATTTTGCTGTTGTTGCTTTTTTAAATTA  450

seq1  TTTTTTTGAGCCAGTGTTTCCATGTGTATCCAAGGCTAGTATGGAACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGAGCCAGTGTTTCCATGTGTATCCAAGGCTAGTATGGAACTTT  500

seq1  AAGAAATATATATACTTTTATTCTACAGTAGTAGTAGTAGTCATCGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATATATATACTTTTATTCTACAGTAGTAGTAGTAGTCATCGTGAA  550

seq1  TTC  553
      |||
seq2  TTC  553


| Home | SequenceCutter | Blast | Download |