BAC Information

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BAC

Clone NameB6Ng01-269B24
Chromosome10 (Build37)
Map Location 79,990,253 - 80,177,417
singlet/doubletdoublet
Overlap geneAtp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1
Upstream genePpap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3
Downstream geneDot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269B24.bB6Ng01-269B24.g
ACCGA071805GA071806
length9721,055
definitionB6Ng01-269B24.b B6Ng01-269B24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,176,453 - 80,177,417)(79,990,253 - 79,991,299)
sequence
gaattctctattaccgttgcccttggctacatagttttaagcgaaactat
gtgcccccaaaatccctgtgtccaaggaaggacagaaaagagaagagaag
agaagagaaaaaaaaagaaaagagaaaagaccatcatggatagatttggc
tttaaccctaactgtagcaaggttacagttagctcctgcttcctcacaac
tgtatgacagggccctgctcttctctgtgagcctgcagcttaccttatgg
gcagtgctcccaggctgcactgggagccttactctcagggtcccctcttc
cttcctcctgagtccctgaggttcactgacaccctatgctcttctttcag
cgataccaggatgcaccaggtgtggaacacattcctgtggtacagatcga
cctctcagtgcctctgaaagttccaggcaagtgtctgctggctctaagct
catagtcaggacctgatggggttcttggtccctgagttgtaaccatccac
acttccctacaggtatgcccatgtcagaccagtatgtgaagctggaggag
cagcggcgacaccggcagcggctggagaaggacaagaaaaggaagaagaa
ggagaagggcaagcggcgccacagctctctccccacggagagcgatgagg
acattgcccctgcccagcgtgtggacattatcactgaggagatgccagag
gttagtgccttctcagctcttttagccttggttacaacgggcttgtctgt
gtgtccctaaaagggaaggctccctacgtgtagatagccacacattgacc
tgttgcacaagccctccatgatgggcagtatttttactccactctttgag
ctggcagccccagctgtgtgtgccactgaaaggctgtgctcccaggctga
gctatagcccaggacactgggcacctggcacatgtaggtatgggatatgg
ggtggtgactgggcagtatgtt
gaattctaaggtcccccatcccagttccaggacttgtcctaacattgcca
tggggaggggacacttttgacacccagaatccttgagggctctccctctc
tgtcccttaagtagatctgaaacatgttcaatcctagaggctggggtcca
gggaaaagggtcccactcactggtttctcatgtccctctatcctgctatg
gccctggaagcctcgagccatggctgctggcatgattgttatacaggatc
tttttgggatgggcacctcagacaggtccgtgttcctcactagacttcag
tttacccacctactccatggaaggctgaccgatctgattgagcccctggg
ctctgggtcctccttctgaaggatctccccacagcagagaaaggcactca
agaacccccagcagagcccttgggcacacagacaaggatgtgccagatgg
tagtggactaaggcaaaggctgttccaagtgggagaaggtccctgaaggc
agggacttatggctgagactcaaggaatgaaagaaatgagtgacgacctt
cattgaagggcacatgcatggggagggtctgcctgacacctgagctcaga
gaaggtgggaatgctgattgcggggacaaggggacagggaggcgaggctg
aggactacaggccagcaggcaaggaaccttatcctcaacactgagacaga
caaagaaaccctgcttcatccacagaggagaaatcaagtctcagagcttg
gccatagctggagaggggccaggcgaagggggtgtcggaggtcacaaccc
aacccaccctcagggtgtccctgtgtgcagtacaaagtcactgcagactg
tggtacctctcagcatctgtgtacagtcaggagtcgaacaaagggaaaat
gttttgtgtgatgacagccctgcccaattgttctgtggctgcccctgagc
atgcgtgcatgccagccctccccccggcaggacacttcacagccaagaac
ttccttcgtggttgcctccatgaccacccttactgccggagacgcctcca
ggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_80176453_80177417
seq2: B6Ng01-269B24.b_49_1020 (reverse)

seq1  AACA-ACTGCCCAGTCAC--ACCCATAT-CCATA-CTACATGTGCCAGGT  45
      |||| |||||||||||||   ||||||| ||||| |||||||||||||||
seq2  AACATACTGCCCAGTCACCACCCCATATCCCATACCTACATGTGCCAGGT  50

seq1  GCCCAGTGTCCTGGGCTATAGCTCAGCCTGGGAGCACAGCC-TTCAGTGG  94
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCCCAGTGTCCTGGGCTATAGCTCAGCCTGGGAGCACAGCCTTTCAGTGG  100

seq1  CACACACAGCTGGGGCTGCCAGCTCAAAGAGTGGAGT-AAAATACTGCCC  143
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CACACACAGCTGGGGCTGCCAGCTCAAAGAGTGGAGTAAAAATACTGCCC  150

seq1  ATCATGGAGGGCTTGTGCAACAGGTCAATGTGTGGCTATCTACACGTAGG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGAGGGCTTGTGCAACAGGTCAATGTGTGGCTATCTACACGTAGG  200

seq1  GAGCCTTCCCTTTTAGGGACACACAGACAAGCCCGTTGTAACCAAGGCTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTCCCTTTTAGGGACACACAGACAAGCCCGTTGTAACCAAGGCTA  250

seq1  AAAGAGCTGAGAAGGCACTAACCTCTGGCATCTCCTCAGTGATAATGTCC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTGAGAAGGCACTAACCTCTGGCATCTCCTCAGTGATAATGTCC  300

seq1  ACACGCTGGGCAGGGGCAATGTCCTCATCGCTCTCCGTGGGGAGAGAGCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCTGGGCAGGGGCAATGTCCTCATCGCTCTCCGTGGGGAGAGAGCT  350

seq1  GTGGCGCCGCTTGCCCTTCTCCTTCTTCTTCCTTTTCTTGTCCTTCTCCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGCCGCTTGCCCTTCTCCTTCTTCTTCCTTTTCTTGTCCTTCTCCA  400

seq1  GCCGCTGCCGGTGTCGCCGCTGCTCCTCCAGCTTCACATACTGGTCTGAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTGCCGGTGTCGCCGCTGCTCCTCCAGCTTCACATACTGGTCTGAC  450

seq1  ATGGGCATACCTGTAGGGAAGTGTGGATGGTTACAACTCAGGGACCAAGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCATACCTGTAGGGAAGTGTGGATGGTTACAACTCAGGGACCAAGA  500

seq1  ACCCCATCAGGTCCTGACTATGAGCTTAGAGCCAGCAGACACTTGCCTGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATCAGGTCCTGACTATGAGCTTAGAGCCAGCAGACACTTGCCTGG  550

seq1  AACTTTCAGAGGCACTGAGAGGTCGATCTGTACCACAGGAATGTGTTCCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCAGAGGCACTGAGAGGTCGATCTGTACCACAGGAATGTGTTCCA  600

seq1  CACCTGGTGCATCCTGGTATCGCTGAAAGAAGAGCATAGGGTGTCAGTGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGTGCATCCTGGTATCGCTGAAAGAAGAGCATAGGGTGTCAGTGA  650

seq1  ACCTCAGGGACTCAGGAGGAAGGAAGAGGGGACCCTGAGAGTAAGGCTCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGGGACTCAGGAGGAAGGAAGAGGGGACCCTGAGAGTAAGGCTCC  700

seq1  CAGTGCAGCCTGGGAGCACTGCCCATAAGGTAAGCTGCAGGCTCACAGAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGCCTGGGAGCACTGCCCATAAGGTAAGCTGCAGGCTCACAGAG  750

seq1  AAGAGCAGGGCCCTGTCATACAGTTGTGAGGAAGCAGGAGCTAACTGTAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGGGCCCTGTCATACAGTTGTGAGGAAGCAGGAGCTAACTGTAA  800

seq1  CCTTGCTACAGTTAGGGTTAAAGCCAAATCTATCCATGATGGTCTTTTCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTACAGTTAGGGTTAAAGCCAAATCTATCCATGATGGTCTTTTCT  850

seq1  CTTTTCTTTTTTTTTCTCTTCTCTTCTCTTCTCTTTTCTGTCCTTCCTTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTTTTTTCTCTTCTCTTCTCTTCTCTTTTCTGTCCTTCCTTG  900

seq1  GACACAGGGATTTTGGGGGCACATAGTTTCGCTTAAAACTATGTAGCCAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGGGATTTTGGGGGCACATAGTTTCGCTTAAAACTATGTAGCCAA  950

seq1  GGGCAACGGTAATAGAGAATTC  965
      ||||||||||||||||||||||
seq2  GGGCAACGGTAATAGAGAATTC  972

seq1: chr10_79990253_79991299
seq2: B6Ng01-269B24.g_70_1124

seq1  GAATTCTAAGGTCCCCCATCCCAGTTCCAGGACTTGTCCTAACATTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGGTCCCCCATCCCAGTTCCAGGACTTGTCCTAACATTGCCA  50

seq1  TGGGGAGGGGACACTTTTGACACCCAGAATCCTTGAGGGCTCTCCCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGGGACACTTTTGACACCCAGAATCCTTGAGGGCTCTCCCTCTC  100

seq1  TGTCCCTTAAGTAGATCTGAAACATGTTCAATCCTAGAGGCTGGGGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTTAAGTAGATCTGAAACATGTTCAATCCTAGAGGCTGGGGTCCA  150

seq1  GGGAAAAGGGTCCCACTCACTGGTTTCTCATGTCCCTCTATCCTGCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAGGGTCCCACTCACTGGTTTCTCATGTCCCTCTATCCTGCTATG  200

seq1  GCCCTGGAAGCCTCGAGCCATGGCTGCTGGCATGATTGTTATACAGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGAAGCCTCGAGCCATGGCTGCTGGCATGATTGTTATACAGGATC  250

seq1  TTTTTGGGATGGGCACCTCAGACAGGTCCGTGTTCCTCACTAGACTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGGATGGGCACCTCAGACAGGTCCGTGTTCCTCACTAGACTTCAG  300

seq1  TTTACCCACCTACTCCATGGAAGGCTGACCGATCTGATTGAGCCCCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCACCTACTCCATGGAAGGCTGACCGATCTGATTGAGCCCCTGGG  350

seq1  CTCTGGGTCCTCCTTCTGAAGGATCTCCCCACAGCAGAGAAAGGCACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGTCCTCCTTCTGAAGGATCTCCCCACAGCAGAGAAAGGCACTCA  400

seq1  AGAACCCCCAGCAGAGCCCTTGGGCACACAGACAAGGATGTGCCAGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCCCAGCAGAGCCCTTGGGCACACAGACAAGGATGTGCCAGATGG  450

seq1  TAGTGGACTAAGGCAAAGGCTGTTCCAAGTGGGAGAAGGTCCCTGAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGACTAAGGCAAAGGCTGTTCCAAGTGGGAGAAGGTCCCTGAAGGC  500

seq1  AGGGACTTATGGCTGAGACTCAAGGAATGAAAGAAATGAGTGACGACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTTATGGCTGAGACTCAAGGAATGAAAGAAATGAGTGACGACCTT  550

seq1  CATTGAAGGGCACATGCATGGGGAGGGTCTGCCTGACACCTGAGCTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAGGGCACATGCATGGGGAGGGTCTGCCTGACACCTGAGCTCAGA  600

seq1  GAAGGTGGGAATGCTGATTGCGGGGACAAGGGGACAGGGAGGCGAGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGGAATGCTGATTGCGGGGACAAGGGGACAGGGAGGCGAGGCTG  650

seq1  AGGACTACAGGCCAGCAGGCAAGGAACCTTATCCTCAACACTGAGACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTACAGGCCAGCAGGCAAGGAACCTTATCCTCAACACTGAGACAGA  700

seq1  CAAAGAAACCCTGCTTCATCCACAGAGGAGAAATCAAGTCTCAGAGCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAACCCTGCTTCATCCACAGAGGAGAAATCAAGTCTCAGAGCTTG  750

seq1  GCCATAGCTGGAGAGGGGCCAGGCGAAGGGGGTGTCGGAGGTCACAACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGCTGGAGAGGGGCCAGGCGAAGGGGGTGTCGGAGGTCACAACCC  800

seq1  AACCCACCCTCAGGGTGTCCCTGTGTGCAGTACAAAGTCACTGCAGACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACCCTCAGGGTGTCCCTGTGTGCAGTACAAAGTCACTGCAGACTG  850

seq1  TGGTACCTCTCAGCATCTGTGTACAGTCAGGAGTCGAAC-AAGGGAAAAT  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGTACCTCTCAGCATCTGTGTACAGTCAGGAGTCGAACAAAGGGAAAAT  900

seq1  GTTTTGTGTGATGAACAGCCCTGCCCAAATG-TCTGTGGCTGCCCCTGAG  948
      ||||||||||||| |||||||||||||| || ||||||||||||||||||
seq2  GTTTTGTGTGATG-ACAGCCCTGCCCAATTGTTCTGTGGCTGCCCCTGAG  949

seq1  CATGCGTGCATGCCAGCC--TCCCCCGGCAGGACAC-TCACAGCCAAG-A  994
      ||||||||||||||||||   ||||||||||||||| ||||||||||| |
seq2  CATGCGTGCATGCCAGCCCTCCCCCCGGCAGGACACTTCACAGCCAAGAA  999

seq1  CTTCCTCGGTGGTGGCCTCCATGA-CACCCTTACTG-CGGAGACG-CTCC  1041
      ||||||  ||||| |||||||||| ||||||||||| |||||||| ||||
seq2  CTTCCTTCGTGGTTGCCTCCATGACCACCCTTACTGCCGGAGACGCCTCC  1049

seq1  AGGATG  1047
      ||||||
seq2  AGGATG  1055