BAC Information

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BAC

Clone NameB6Ng01-269D17
Chromosome10 (Build37)
Map Location 111,736,021 - 111,888,908
singlet/doubletdoublet
Overlap geneKcnc2
Upstream geneBbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2
Downstream geneLOC100042639, 4921506J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269D17.bB6Ng01-269D17.g
ACCGA071885GA071886
length1,0971,168
definitionB6Ng01-269D17.b B6Ng01-269D17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,887,829 - 111,888,908)(111,736,021 - 111,737,186)
sequence
gaattccttactccttaccaccataagatatcagattttcatatgcaagg
agagaaaaaagtctctatttaacaatctctctagataattaatatgcata
ttaaaattggaaaccaatttcttgtgtgttattcgggaaactgataaaac
aaatcatcaaatgagttggaagagttttcaaatgacaaaaatgcattcaa
agtcttacatgaaacttcctaaaggcttattaataaacatttacaagatt
tacagaagcatacctagctgctgatataattttggatccttcaaaaatcg
ccatgagcaaatataccatctgaacaatctataagtgcaaacatatttaa
gacaaagtgttggagaccaacaggtgtttttgcaaagcatttgctgcatg
tatctttcaataatttttggttttttgttttttgtttgtttgtttggttg
gttggttggtttttcgagacagggtttctctgtatagctctgactgtcct
gaaactcactttgtagaccaggctggcctcgaactcagaaatccacctgc
ctctgcctcccgagtgctgggattaaaggcacacgccaccacacccagct
ctttcaataatttttgtcaccattctttaaagaacaagggaggtggagag
atgtatcagcagttaagagtgctaggtgtttttctagaagaccttggttc
aattcccagcacctccactgcagtgcacaatgtattaaggggacggtcgc
cctctaaaggctgctgtgggcactgcatgcaacaggtgcccaagcatatg
cttccaaaacacattgaaaataaatgtaaagagtaaaagaaatttaaaga
attataataagaactcccgaagctgctttctgccaaaagggctgaatctt
tcacttgggaatctgcagatggcccaatgactaactaaaaagaaaaggaa
agttttagcatcttctgccttcatactaccacttgttctctttcatggtg
agtcattcttctttgcagtcaccttggggtcccaggaaacaacaggattg
gtctataaaattccttggtgaaggagttgaaactcccttcctaggct

gaattccataccatgagtaacagagagatagtaaggtgtagaagtaccac
tggcttgactttacagaagacaaaggacagaaagaaagaaaaagagcaaa
gtggagcgaagatgggcttcacaggaacttgaatgctgccatttgaccat
ggtaacacacctccccatgggcctaatgactgtacagatttggcttcctt
agaagtatgtaccatgaccagcaaccttgaacaagtaccagttacttagc
aacaaaacaacttttactggaaaatgtaaattttgcttttactcactaat
ttacaaaaagattactgaacttttcaatttccattgatcaaggagatatt
ctgaaatgagaatattatttgctttgactttatgttttaggacaaagaga
ttcccattgttattttgtaagacataattgtagagaatcgatatttcaat
tgttttttgtggagacaaggaataaaatagcactcaggtggctttgaaaa
gtgtcacagtcatagtgctaagattgctaaaggattctgataggatttca
aaaatatgggaaaccttgggaacattccaaaggtaatattcgttttactt
acagaacttagtttagtttataaattgtctaattcacacctgaatgtagc
agatgattgggtaaattatttttgaattagatattggagtaaaaacttca
cttttttattatgatggttgtcttctgtgataaattattaatttttaaag
aaatagtcaggctgtaaagttgtatatttgtttagcataaaacaaattgt
caaattttgtttagaagtttttgcatgaaagtctgtttgaaaacacatgt
attaaggggacactgataaatttgcaccatattacactgataggatgcca
gaaagttcaagaatccctctttcagctagtataatctagtttctgagtgt
ctgttattgtacaaatgtttcccgagtggggtcactgttaagttttttct
caactataaacaccatgacaaattagtgatcagatgcaagcatccagtaa
taagggcagtgtgagtgcaaggtagaagaaaactagttagtccgtgagtg
acagagatgggatgaacaatgaagtcattgttctcttggctctgtgggtt
tccagcctcagttttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_111887829_111888908
seq2: B6Ng01-269D17.b_50_1146 (reverse)

seq1  AGCCTAGGAAGGGA-TTTCAACT-CATCAC--AGGAATTTTATAGACCAA  46
      |||||||||||||| |||||||| | ||||  ||||||||||||||||||
seq2  AGCCTAGGAAGGGAGTTTCAACTCCTTCACCAAGGAATTTTATAGACCAA  50

seq1  TCCTGTTG-TTCCTGGGA-CCCAAGGTGACTGCAAAGAAGAATGACTCAC  94
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  TCCTGTTGTTTCCTGGGACCCCAAGGTGACTGCAAAGAAGAATGACTCAC  100

seq1  ATGGAAAGAGA--CAGTTGTAGTATGAAGGCAG-AGATGCTAAAACTTTC  141
         ||||||||   ||| ||||||||||||||| ||||||||||||||||
seq2  CATGAAAGAGAACAAGTGGTAGTATGAAGGCAGAAGATGCTAAAACTTTC  150

seq1  CTTTTCTTTTTAGTTAGTCATTGGG-CATCTGCAGATTCCCAAGTG-AAG  189
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  CTTTTCTTTTTAGTTAGTCATTGGGCCATCTGCAGATTCCCAAGTGAAAG  200

seq1  ATTCAGCCCTTTTGGCAG-AAGCAGCTTC-GGAGTTCTTATTATAATTCT  237
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  ATTCAGCCCTTTTGGCAGAAAGCAGCTTCGGGAGTTCTTATTATAATTCT  250

seq1  TT-AATTTCTTTTACTCTTTACATTTATTT--CATGTGTTTTGGAAGCAT  284
      || |||||||||||||||||||||||||||   |||||||||||||||||
seq2  TTAAATTTCTTTTACTCTTTACATTTATTTTCAATGTGTTTTGGAAGCAT  300

seq1  ATGCTTGGGCACCTGTTGCATGCAGTGCCCACAGCAGCCTTTAGAGGGCG  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGGGCACCTGTTGCATGCAGTGCCCACAGCAGCCTTTAGAGGGCG  350

seq1  ACCGT-CCCTTAATACATTGTGCACTGCAGTGGAGGTGCTGGGAATTGAA  383
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCCCCTTAATACATTGTGCACTGCAGTGGAGGTGCTGGGAATTGAA  400

seq1  CCAAGGTCTTCTAGAAAAACACCTAGCACTCTTAACTGCTGATACATCTC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTCTTCTAGAAAAACACCTAGCACTCTTAACTGCTGATACATCTC  450

seq1  TCCACCTCCCTTGTTCTTTAAAGAATGGTGACAAAAATTATTGAAAGAGC  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCCCTTGTTCTTTAAAGAATGGTGACAAAAATTATTGAAAGAGC  500

seq1  TGGGTGTGGTGGCGTGTGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTGGTGGCGTGTGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCA  550

seq1  GGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTTCAGG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTTCAGG  600

seq1  ACAGTCAGAGCTATACAGAGAAACCCTGTCTCGAAAAACCAACCAACCAA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGAGCTATACAGAGAAACCCTGTCTCGAAAAACCAACCAACCAA  650

seq1  CCAAACAAACAAACAAAAAACAAAAAACCAAAAATTATTGAAAGATACAT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAACAAACAAAAAACAAAAAACCAAAAATTATTGAAAGATACAT  700

seq1  GCAGCAAATGCTTTGCAAAAACACCTGTTGGTCTCCAACACTTTGTCTTA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAATGCTTTGCAAAAACACCTGTTGGTCTCCAACACTTTGTCTTA  750

seq1  AATATGTTTGCACTTATAGATTGTTCAGATGGTATATTTGCTCATGGCGA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTTGCACTTATAGATTGTTCAGATGGTATATTTGCTCATGGCGA  800

seq1  TTTTTGAAGGATCCAAAATTATATCAGCAGCTAGGTATGCTTCTGTAAAT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAGGATCCAAAATTATATCAGCAGCTAGGTATGCTTCTGTAAAT  850

seq1  CTTGTAAATGTTTATTAATAAGCCTTTAGGAAGTTTCATGTAAGACTTTG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAATGTTTATTAATAAGCCTTTAGGAAGTTTCATGTAAGACTTTG  900

seq1  AATGCATTTTTGTCATTTGAAAACTCTTCCAACTCATTTGATGATTTGTT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTTTTGTCATTTGAAAACTCTTCCAACTCATTTGATGATTTGTT  950

seq1  TTATCAGTTTCCCGAATAACACACAAGAAATTGGTTTCCAATTTTAATAT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGTTTCCCGAATAACACACAAGAAATTGGTTTCCAATTTTAATAT  1000

seq1  GCATATTAATTATCTAGAGAGATTGTTAAATAGAGACTTTTTTCTCTCCT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTAATTATCTAGAGAGATTGTTAAATAGAGACTTTTTTCTCTCCT  1050

seq1  TGCATATGAAAATCTGATATCTTATGGTGGTAAGGAGTAAGGAATTC  1080
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGAAAATCTGATATCTTATGGTGGTAAGGAGTAAGGAATTC  1097


seq1: chr10_111736021_111737186
seq2: B6Ng01-269D17.g_64_1231

seq1  GAATTCCATACCATGAGTAACAGAGAGATAGTAAGGTGTAGAAGTACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACCATGAGTAACAGAGAGATAGTAAGGTGTAGAAGTACCAC  50

seq1  TGGCTTGACTTTACAGAAGACAAAGGACAGAAAGAAAGAAAAAGAGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGACTTTACAGAAGACAAAGGACAGAAAGAAAGAAAAAGAGCAAA  100

seq1  GTGGAGCGAAGATGGGCTTCACAGGAACTTGAATGCTGCCATTTGACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCGAAGATGGGCTTCACAGGAACTTGAATGCTGCCATTTGACCAT  150

seq1  GGTAACACACCTCCCCATGGGCCTAATGACTGTACAGATTTGGCTTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACACACCTCCCCATGGGCCTAATGACTGTACAGATTTGGCTTCCTT  200

seq1  AGAAGTATGTACCATGACCAGCAACCTTGAACAAGTACCAGTTACTTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTATGTACCATGACCAGCAACCTTGAACAAGTACCAGTTACTTAGC  250

seq1  AACAAAACAACTTTTACTGGAAAATGTAAATTTTGCTTTTACTCACTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAACTTTTACTGGAAAATGTAAATTTTGCTTTTACTCACTAAT  300

seq1  TTACAAAAAGATTACTGAACTTTTCAATTTCCATTGATCAAGGAGATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAAAGATTACTGAACTTTTCAATTTCCATTGATCAAGGAGATATT  350

seq1  CTGAAATGAGAATATTATTTGCTTTGACTTTATGTTTTAGGACAAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGAGAATATTATTTGCTTTGACTTTATGTTTTAGGACAAAGAGA  400

seq1  TTCCCATTGTTATTTTGTAAGACATAATTGTAGAGAATCGATATTTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTGTTATTTTGTAAGACATAATTGTAGAGAATCGATATTTCAAT  450

seq1  TGTTTTTTGTGGAGACAAGGAATAAAATAGCACTCAGGTGGCTTTGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGTGGAGACAAGGAATAAAATAGCACTCAGGTGGCTTTGAAAA  500

seq1  GTGTCACAGTCATAGTGCTAAGATTGCTAAAGGATTCTGATAGGATTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACAGTCATAGTGCTAAGATTGCTAAAGGATTCTGATAGGATTTCA  550

seq1  AAAATATGGGAAACCTTGGGAACATTCCAAAGGTAATATTCGTTTTACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGGGAAACCTTGGGAACATTCCAAAGGTAATATTCGTTTTACTT  600

seq1  ACAGAACTTAGTTTAGTTTATAAATTGTCTAATTCACACCTGAATGTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTTAGTTTAGTTTATAAATTGTCTAATTCACACCTGAATGTAGC  650

seq1  AGATGATTGGGTAAATTATTTTTGAATTAGATATTGGAGTAAAAACTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATTGGGTAAATTATTTTTGAATTAGATATTGGAGTAAAAACTTCA  700

seq1  CTTTTTTATTATGATGGTTGTCTTCTGTGATAAATTATTAATTTTTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTATTATGATGGTTGTCTTCTGTGATAAATTATTAATTTTTAAAG  750

seq1  AAATAGTCAGGCTGTAAAGTTGTATATTTGTTTAGCATAAAACAAATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTCAGGCTGTAAAGTTGTATATTTGTTTAGCATAAAACAAATTGT  800

seq1  CAAATTTTGTTTAGAAGTTTTTGCATGAAAGTCTGTTTGAAAACACATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTGTTTAGAAGTTTTTGCATGAAAGTCTGTTTGAAAACACATGT  850

seq1  ATTAAGGGGACACTGATAAATTTGCACCATATTACACTGATAGGATGCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGGGACACTGATAAATTTGCACCATATTACACTGATAGGATGCCA  900

seq1  GAAAGTTCAAGAATCCCTCTTTCAGCTAGTATAATCTAGTTTCTGAGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTCAAGAATCCCTCTTTCAGCTAGTATAATCTAGTTTCTGAGTGT  950

seq1  CTGTTATTGTACAAATGTTTCCCGAGTGGGGTCACTGTTAAG-TTTTTCT  999
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGTTATTGTACAAATGTTTCCCGAGTGGGGTCACTGTTAAGTTTTTTCT  1000

seq1  CAACTATAAACACCATGACAAATTAGTGATCAGATTGCAAGCCATCCAGT  1049
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  CAACTATAAACACCATGACAAATTAGTGATCAGA-TGCAAG-CATCCAGT  1048

seq1  AATAAGGGGCAGTGTGAAGTGGAAAGTAGA--GAGACTAG-TAGTCCGTT  1096
      ||||| |||||||||| |||| || |||||   | ||||| ||||||| |
seq2  AATAA-GGGCAGTGTG-AGTGCAAGGTAGAAGAAAACTAGTTAGTCCG-T  1095

seq1  GAGTGACAGAGGTTGGGATG-ACAATGAAGTCATTGTTTCTCTT-GCTCT  1144
      |||||||||| | ||||||| ||||||||||||||| ||||||| |||||
seq2  GAGTGACAGA-GATGGGATGAACAATGAAGTCATTG-TTCTCTTGGCTCT  1143

seq1  GTGG---TTCAG-CTCATGTTTTTTC  1166
      ||||   | ||| |||| ||||||||
seq2  GTGGGTTTCCAGCCTCA-GTTTTTTC  1168


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