BAC Information

Click to search

BAC

Clone NameB6Ng01-270C21
Chromosome10 (Build37)
Map Location 29,479,352 - 29,627,913
singlet/doubletdoublet
Overlap geneLOC623064
Upstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12
Downstream geneLOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270C21.bB6Ng01-270C21.g
ACCGA072588GA072589
length7481,129
definitionB6Ng01-270C21.b B6Ng01-270C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,627,166 - 29,627,913)(29,479,352 - 29,480,498)
sequence
gaattccagaaaagactccaaggggcctctgtggctctttgtgatgaaaa
actaaagctttgcattttatcccagttggaattccaggcattgaagaagc
caactttaattattattattgttttcatcagaactgagcccctttttgat
tgtttaggtttatactaatcgtctgttaccatactctctttcccttaagt
aagattcaaaataaaacaagggaagcgtcacaggcagactcagaagagcc
aacattgtgaatttccatagagacctgtaatagaatggatttattaagaa
agaaatattaattgaagcagggccaacagtggtggacaaatttcacagat
gtatggaagaaattgcctggggggaagtagcagctgagattagaaatggt
aattcattgtaacaactcaaactctaaactgagatatgaataatcataaa
atctcagagctataattttattttacagattttaaacccaaccttaactg
cgaaaactaactacatcattttcaaatagattattcaattttaacttaag
ttctatctacatgggccaacaatagtaattgcattttaagtttaactaga
gaagcacaagagatgactctgacaatgaaggctttgccatcaagcatggt
gacctgagttgtatcccagggatctgatagcaaatgggaacagtcagctc
tcatagttgttcacagcaatcctcctcctctcctccccctccccctcc

gaattccttgtaaactttgccctgtatttgggagacataggggagattgt
ggcaaagacagacttattcatggaaatccgtttgccacagatatttattg
aaaatcttatattgaaaacaaattatttgatgtgacttttcatatggaag
gtggatgaggaattttaaaatcataaaacatggaagacagccgggtgtgg
tggaacacgtatttagtcccagcactcgggggaagaggcaggcagatttc
tgagttcgaggacaacctggtctacaaagtgagttccaggacagtcagag
ctacacagagaaaccctgtctcgaaaaaacaaaaaacaaaaaaacaaaac
aaacaaaaaaccacaaacaaccaaacaacaacaacaacaacatcatcaac
aacaacaacaacaaaaaaaaaaacaaaaaacatggaagacatgtaacaaa
agaacaagagagttactggcagaatatattctgaatttgaaagttggctt
tatttgaaaaactgggaggcagccagttagagtcagatattaataggaat
caagtctttatgttttttataagcagttatttatcaaactagaattaatt
tgcaaatagtcagaaactgtatgtttgctgagaggtgagcttaatttaag
ttgccaagaactgtctgttctttcagaactgttcacatttgtagtataag
gctatgcttgacattttccataaaacatcttctcatgttatttatgataa
ttttcaactttgataccaaattaaagaaaattaattagctttaatctctt
aaataggaaatgtaagttaatcattctttcttagtttttaagatacttat
ttattcatacttttcaaattcaatattttaacaatttaatttgctttttg
aaaaggtacattataaaaaagttagctctgagataaatcagttgccttta
gatattacaggagacattattcatagaaaaagtgtgacatgcagacagtt
catatgtatcagcacagctttattcactgtataacaaaacgacctaaacc
aatcactgagtttaagaagaaggaagaataggacggaatcgattagaact
cttaagtctaacttagacttgcaatgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_29627166_29627913
seq2: B6Ng01-270C21.b_31_778 (reverse)

seq1  GGAGAGGGAGGGGGAGGAGAGGAGGAGGATTGCTGTGAACAACTATGAGA  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGAGGGGGAGGAGAGGAGGAGGATTGCTGTGAACAACTATGAGA  50

seq1  GCTGACTGTTCCCATTTGCTATCAGATCCCTGGGATACAACTCAGGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTGTTCCCATTTGCTATCAGATCCCTGGGATACAACTCAGGTCAC  100

seq1  CATGCTTGATGGCAAAGCCTTCATTGTCAGAGTCATCTCTTGTGCTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTGATGGCAAAGCCTTCATTGTCAGAGTCATCTCTTGTGCTTCTC  150

seq1  TAGTTAAACTTAAAATGCAATTACTATTGTTGGCCCATGTAGATAGAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAACTTAAAATGCAATTACTATTGTTGGCCCATGTAGATAGAACT  200

seq1  TAAGTTAAAATTGAATAATCTATTTGAAAATGATGTAGTTAGTTTTCGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTAAAATTGAATAATCTATTTGAAAATGATGTAGTTAGTTTTCGCA  250

seq1  GTTAAGGTTGGGTTTAAAATCTGTAAAATAAAATTATAGCTCTGAGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGTTGGGTTTAAAATCTGTAAAATAAAATTATAGCTCTGAGATTT  300

seq1  TATGATTATTCATATCTCAGTTTAGAGTTTGAGTTGTTACAATGAATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTATTCATATCTCAGTTTAGAGTTTGAGTTGTTACAATGAATTAC  350

seq1  CATTTCTAATCTCAGCTGCTACTTCCCCCCAGGCAATTTCTTCCATACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTAATCTCAGCTGCTACTTCCCCCCAGGCAATTTCTTCCATACAT  400

seq1  CTGTGAAATTTGTCCACCACTGTTGGCCCTGCTTCAATTAATATTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAATTTGTCCACCACTGTTGGCCCTGCTTCAATTAATATTTCTTT  450

seq1  CTTAATAAATCCATTCTATTACAGGTCTCTATGGAAATTCACAATGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAAATCCATTCTATTACAGGTCTCTATGGAAATTCACAATGTTGG  500

seq1  CTCTTCTGAGTCTGCCTGTGACGCTTCCCTTGTTTTATTTTGAATCTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGAGTCTGCCTGTGACGCTTCCCTTGTTTTATTTTGAATCTTAC  550

seq1  TTAAGGGAAAGAGAGTATGGTAACAGACGATTAGTATAAACCTAAACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGAAAGAGAGTATGGTAACAGACGATTAGTATAAACCTAAACAAT  600

seq1  CAAAAAGGGGCTCAGTTCTGATGAAAACAATAATAATAATTAAAGTTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGGGCTCAGTTCTGATGAAAACAATAATAATAATTAAAGTTGGC  650

seq1  TTCTTCAATGCCTGGAATTCCAACTGGGATAAAATGCAAAGCTTTAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAATGCCTGGAATTCCAACTGGGATAAAATGCAAAGCTTTAGTTT  700

seq1  TTCATCACAAAGAGCCACAGAGGCCCCTTGGAGTCTTTTCTGGAATTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACAAAGAGCCACAGAGGCCCCTTGGAGTCTTTTCTGGAATTC  748


seq1: chr10_29479352_29480498
seq2: B6Ng01-270C21.g_64_1192

seq1  GAATTCCTTGTAAACTTTGCCCTGTATTTGGGAGACATAGGGGAGATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTAAACTTTGCCCTGTATTTGGGAGACATAGGGGAGATTGT  50

seq1  GGCAAAGACAGACTTATTCATGGAAATCCGTTTGCCACAGATATTTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGACAGACTTATTCATGGAAATCCGTTTGCCACAGATATTTATTG  100

seq1  AAAATCTTATATTGAAAACAAATTATTTGATGTGACTTTTCATATGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTATATTGAAAACAAATTATTTGATGTGACTTTTCATATGGAAG  150

seq1  GTGGATGAGGAATTTTAAAATCATAAAACATGGAAGACAGCCGGGTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGAGGAATTTTAAAATCATAAAACATGGAAGACAGCCGGGTGTGG  200

seq1  TGGAACACGTATTTAGTCCCAGCACTCGGGGGAAGAGGCAGGCAGATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACACGTATTTAGTCCCAGCACTCGGGGGAAGAGGCAGGCAGATTTC  250

seq1  TGAGTTCGAGGACAACCTGGTCTACAAAGTGAGTTCCAGGACAGTCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCGAGGACAACCTGGTCTACAAAGTGAGTTCCAGGACAGTCAGAG  300

seq1  CTACACAGAGAAACCCTGTCTCGAAAAAACAAAAAACAAAAAAACAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGAGAAACCCTGTCTCGAAAAAACAAAAAACAAAAAAACAAAAC  350

seq1  AAACAAAAAACCACAAACAACCAAACAACAACAACAACAACATCATCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAACCACAAACAACCAAACAACAACAACAACAACATCATCAAC  400

seq1  AACAACAACAACAAAAAAAAAAACAAAAAACATGGAAGACATGTAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAACAAAAAAAAAAACAAAAAACATGGAAGACATGTAACAAA  450

seq1  AGAACAAGAGAGTTACTGGCAGAATATATTCTGAATTTGAAAGTTGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAGAGAGTTACTGGCAGAATATATTCTGAATTTGAAAGTTGGCTT  500

seq1  TATTTGAAAAACTGGGAGGCAGCCAGTTAGAGTCAGATATTAATAGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAAAAACTGGGAGGCAGCCAGTTAGAGTCAGATATTAATAGGAAT  550

seq1  CAAGTCTTTATGTTTTTTATAAGCAGTTATTTATCAAACTAGAATTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTTTATGTTTTTTATAAGCAGTTATTTATCAAACTAGAATTAATT  600

seq1  TGCAAATAGTCAGAAACTGTATGTTTGCTGAGAGGTGAGCTTAATTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATAGTCAGAAACTGTATGTTTGCTGAGAGGTGAGCTTAATTTAAG  650

seq1  TTGCCAAGAACTGTCTGTTCTTTCAGAACTGTTCACATTTGTAGTATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAGAACTGTCTGTTCTTTCAGAACTGTTCACATTTGTAGTATAAG  700

seq1  GCTATGCTTGACATTTTCCATAAAACATCTTCTCATGTTATTTATGATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCTTGACATTTTCCATAAAACATCTTCTCATGTTATTTATGATAA  750

seq1  TTTTCAACTTTGATACCAAATTAAAGAAAATTAATTAGCTTTAATCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACTTTGATACCAAATTAAAGAAAATTAATTAGCTTTAATCTCTT  800

seq1  AAATAGGAAATGTAAGTTAATCATTCTTTCTTAGTTTTTAAGATACTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGAAATGTAAGTTAATCATTCTTTCTTAGTTTTTAAGATACTTAT  850

seq1  TTATTCATACTTTTCAAATTCAATATTTTAACAATTTAA-TTGCTTTTTG  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTATTCATACTTTTCAAATTCAATATTTTAACAATTTAATTTGCTTTTTG  900

seq1  AAAAGGTACATTATAAAAAAGTTAGCTCTGAGATAAATCAGTTGCC-TTA  948
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAAAGGTACATTATAAAAAAGTTAGCTCTGAGATAAATCAGTTGCCTTTA  950

seq1  GATATTTACAGGAAGACATTATTCATAGAAAAAGTGTGACATGCCAGAAA  998
      |||| ||||||| |||||||||||||||||||||||||||||| |||| |
seq2  GATA-TTACAGG-AGACATTATTCATAGAAAAAGTGTGACATG-CAGACA  997

seq1  AGGTTTCATATGTATCAGCACAGCCTTTAATCACTGTATAACAAAACGAC  1048
          ||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  ---GTTCATATGTATCAGCACAG-CTTTATTCACTGTATAACAAAACGAC  1043

seq1  TTAAAAACAAATCACTGAGTTTTAAAGAGAGAAAGGAAAGATAAGACAGA  1098
       |  |||| |||||||||||||  |||| || ||||||  ||| ||| ||
seq2  CT--AAACCAATCACTGAGTTT--AAGA-AG-AAGGAAGAATAGGACGGA  1087

seq1  ATAGGAAAATAAGAAACTCTTTAAGTTCTACCTAGAACTTGCAATGTAT  1147
      || |    || || ||||| ||||| |||| ||   |||||||||||||
seq2  ATCG----ATTAG-AACTC-TTAAG-TCTAACTTAGACTTGCAATGTAT  1129


| Home | SequenceCutter | Blast | Download |