BAC Information

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BAC

Clone NameB6Ng01-271H07
Chromosome10 (Build37)
Map Location 127,202,779 - 127,371,123
singlet/doubletdoublet
Overlap geneRdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr
Downstream geneLOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271H07.bB6Ng01-271H07.g
ACCGA073532GA073533
length1,1211,108
definitionB6Ng01-271H07.b B6Ng01-271H07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,202,779 - 127,203,911)(127,370,015 - 127,371,123)
sequence
gaattctgccaagggattcagatacaaaagtgctggctgatgtccagact
atgagcatcatggctaccatgaaggtcgacacagatgaggaggctgggac
cagcttgtgccaagcattcttctgtgtcctcctctgcaggaaatgcacat
gccctggctagtttaaacccctatgcagcatggaagtgtccctgctctga
agtcacctgagaccatggtgtagggtctgagagagtcactaataaagcca
gcacccatgccctggagtcaagttggcaggccctgggtgggaggttcagt
tcccggtgatgaaacctagcagaggatggagacaccatttttttttaaaa
atcatggcttcttttggactctttatttttagaacaaagtatgaggtcat
ctcctgtaccctgtgatttaaattatggcttttctggttagtgaggtttg
gatcacaggggtcagggttggcacaggccagcaggctttctgagttgcag
actcactaagtgaccatgctttcctgcagacccactaggggaccatccct
tgctgcagactcactaattgaccgtatcttacctgcatattcactaattg
accgtatcttacctgcagaatcaggaagttgccatcccttcctgcagact
caatacatgataatcaattccctgcagactcactaagtgaccatcccttt
cctgcagacccattaagtgatcattccttccctgcagacccattaagtca
ccattccttcatataagtatcactaactgaccattataataaaacccttc
tgattttctgtctgaacttgtcccaggccacttctcatgtcccctccctc
tgtcccactgccacactcctccagcagcatgcagagattgcctttcttat
ctcttgtctttcattttatggacaatatttacaaaagatcaagggtcttt
aactcccatagcctctgaggcctggctctgcctggtgctagttggtgatc
ttcaagaatagcttgagcaggacagcatgtgtggagagacagatcctggc
tcagtgcagacttgcctgggagggattccatagatgctgactctcttctc
tcatagaatgtgggggctgag
gaattcacagaaatgctgtgtgggtgtcaaagcctgtgattcaggacttg
gaagttggaaacaagggatccctggggcaagatagcaagctatactagct
ggtgtcagcgaactctgatccaagatgtcaccctcaggtctccacaagcc
tgtcacacacacacactacacatgaatatcgatacaccacatggatgaat
gcacacaacacggaaaaaatgaaaataaataaaaacctctaaattcccat
ctgcgtgaaagctgaactgtagttaaatctttccttccgccaaagtcttc
acttagagaggccaagcttttccatcaaggcccccattggcatacggaag
gccaaacagtacgaaacctaaccggcaacatccaattcatgcctcatcag
ggcaatatttaaacactgtcttaatttttctgccgctttccaattgtata
atggcagccagtgtataggcctaagttttataaaataaattttttctttt
tgcctttaccctggaactaggacattttaaattacaaaaatgtatttgta
gagtcactgttgggtatttttgcaattgtgagcaatatctctagatacaa
cagcaagtgattgggaggccttatgcaagaagctccgaggagagtctgtt
tggaaagtatcaagataataaagtccattccatcaatcttgtcaatttag
ctacattattctaacatcagtcctaacttagagagtttgcaactctatac
ctgaattatgttttgattttaccttagattaccatctgggaaacagtcct
ttcaaatctacattatcttcctcaatacaaaacaactgaaagtttgatta
tgaaactataactagtcttcaaccctatcagagatccaagaatgaattac
atattatctgaatgtataggaagcacaaaacatagcttccaaaacttaac
caatttgcagagacagctgtacctgaccagtcccctattatttcttataa
tgtggagcagctgtcttcagccttctgggctcagaccatctgacagacct
tacatgaagcaagaatatggtttaggtatgggttaataagtcataacact
tttgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_127202779_127203911
seq2: B6Ng01-271H07.b_41_1161

seq1  GAATTCTGCCAAGGGATTCAGATACAAAAGTGCTGGCTGATGTCCAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCAAGGGATTCAGATACAAAAGTGCTGGCTGATGTCCAGACT  50

seq1  ATGAGCATCATGGCTACCATGAAGGTCGACACAGATGAGGAGGCTGGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCATCATGGCTACCATGAAGGTCGACACAGATGAGGAGGCTGGGAC  100

seq1  CAGCTTGTGCCAAGCATTCTTCTGTGTCCTCCTCTGCAGGAAATGCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGTGCCAAGCATTCTTCTGTGTCCTCCTCTGCAGGAAATGCACAT  150

seq1  GCCCTGGCTAGTTTAAACCCCTATGCAGCATGGAAGTGTCCCTGCTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCTAGTTTAAACCCCTATGCAGCATGGAAGTGTCCCTGCTCTGA  200

seq1  AGTCACCTGAGACCATGGTGTAGGGTCTGAGAGAGTCACTAATAAAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCTGAGACCATGGTGTAGGGTCTGAGAGAGTCACTAATAAAGCCA  250

seq1  GCACCCATGCCCTGGAGTCAAGTTGGCAGGCCCTGGGTGGGAGGTTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCATGCCCTGGAGTCAAGTTGGCAGGCCCTGGGTGGGAGGTTCAGT  300

seq1  TCCCGGTGATGAAACCTAGCAGAGGATGGAGACACCATTTTTTTTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGTGATGAAACCTAGCAGAGGATGGAGACACCATTTTTTTTTAAAA  350

seq1  ATCATGGCTTCTTTTGGACTCTTTATTTTTAGAACAAAGTATGAGGTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGCTTCTTTTGGACTCTTTATTTTTAGAACAAAGTATGAGGTCAT  400

seq1  CTCCTGTACCCTGTGATTTAAATTATGGCTTTTCTGGTTAGTGAGGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTACCCTGTGATTTAAATTATGGCTTTTCTGGTTAGTGAGGTTTG  450

seq1  GATCACAGGGGTCAGGGTTGGCACAGGCCAGCAGGCTTTCTGAGTTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAGGGGTCAGGGTTGGCACAGGCCAGCAGGCTTTCTGAGTTGCAG  500

seq1  ACTCACTAAGTGACCATGCTTTCCTGCAGACCCACTAGGGGACCATCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTAAGTGACCATGCTTTCCTGCAGACCCACTAGGGGACCATCCCT  550

seq1  TGCTGCAGACTCACTAATTGACCGTATCTTACCTGCATATTCACTAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGACTCACTAATTGACCGTATCTTACCTGCATATTCACTAATTG  600

seq1  ACCGTATCTTACCTGCAGAATCAGGAAGTTGCCATCCCTTCCTGCAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTATCTTACCTGCAGAATCAGGAAGTTGCCATCCCTTCCTGCAGACT  650

seq1  CAATACATGATAATCAATTCCCTGCAGACTCACTAAGTGACCATCCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACATGATAATCAATTCCCTGCAGACTCACTAAGTGACCATCCCTTT  700

seq1  CCTGCAGACCCATTAAGTGATCATTCCTTCCCTGCAGACCCATTAAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGACCCATTAAGTGATCATTCCTTCCCTGCAGACCCATTAAGTCA  750

seq1  CCATTCCTTCATATAAGTATCACTAACTGACCATTATAATAAAACCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCTTCATATAAGTATCACTAACTGACCATTATAATAAAACCCTTC  800

seq1  TGATTTTCTGTCTGAACTTGTCCCAGGCCACTTCTCATGTCCCCTCCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCTGTCTGAACTTGTCCCAGGCCACTTCTCATGTCCCCTCCCTC  850

seq1  TGTCCCACTGCCACACTCCTCCAGCAGCATGCAGAGATTGCCTTTCTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCACTGCCACACTCCTCCAGCAGCATGCAGAGATTGCCTTTCTTAT  900

seq1  CTCTTGTCTTTCATTTTATGGACAATATTTACAAAAGATCAAGGGTCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTCTTTCATTTTATGGACAATATTTACAAAAGATCAAGGGTCTTT  950

seq1  AACTCCCATAGCCTCTGAGGCCTGGCTCTGCCTGGTGCTAGGTTGGTGAA  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  AACTCCCATAGCCTCTGAGGCCTGGCTCTGCCTGGTGCTA-GTTGGTGAT  999

seq1  TCTCAAGAATAGGCTGAGCAGGGACAGCATGTGTGGGAGAGACAGAATCC  1050
        ||||||||||  |||||| ||||||||||||| |||||||||| ||||
seq2  CTTCAAGAATAGCTTGAGCA-GGACAGCATGTGT-GGAGAGACAG-ATCC  1046

seq1  TGGGCTCAGTGCAGACTTGCCCTTGGGAGGGAATTCCATAGATGCCTGAC  1100
      | |||||||||||||||||||  |||||||| |||||||||||| |||||
seq2  T-GGCTCAGTGCAGACTTGCC--TGGGAGGG-ATTCCATAGATG-CTGAC  1091

seq1  TCCTCTTCTCTCAGTAGAAATGTGGGGGCTGAG  1133
      | ||||||||||| ||| |||||||||||||||
seq2  T-CTCTTCTCTCA-TAG-AATGTGGGGGCTGAG  1121

seq1: chr10_127370015_127371123
seq2: B6Ng01-271H07.g_64_1171 (reverse)

seq1  CTCCCAAAAAGTTGTTATGACTTTATTAA-CCATA-CTAACCATTATTCC  48
      |||||||||   ||||||||| ||||||| ||||| |||| |  ||||| 
seq2  CTCCCAAAA--GTGTTATGAC-TTATTAACCCATACCTAAACCATATTCT  47

seq1  TGCTTCATGTAAGGTCTGTCAGATGGTTCTGAG-CCAGAAGGCTGAAGAC  97
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  TGCTTCATGTAAGGTCTGTCAGATGG-TCTGAGCCCAGAAGGCTGAAGAC  96

seq1  AGCTGCTCCAACATTATAAGAAAT-ATAGGGGACTGTCCAGGTACCAGCT  146
      ||||||||| |||||||||||||| |||||||||||  |||||| |||||
seq2  AGCTGCTCC-ACATTATAAGAAATAATAGGGGACTGGTCAGGTA-CAGCT  144

seq1  GTCTCTGCAAATTGGTTAAGTTTTGGAAGCTATGTTTTTGTGCTTCCTAT  196
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTCTCTGCAAATTGGTTAAGTTTTGGAAGCTATG-TTTTGTGCTTCCTAT  193

seq1  ACATTCAGATAATATGTAATTCATTCTTGGATCTCTGATAGGGTTGAAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGATAATATGTAATTCATTCTTGGATCTCTGATAGGGTTGAAGA  243

seq1  CTAGTTATAGTTTCATAATCAAAC-TTCAGTTGTTTTGTATTGAGGAAGA  295
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTAGTTATAGTTTCATAATCAAACTTTCAGTTGTTTTGTATTGAGGAAGA  293

seq1  TAATGTAGATTTGAAAGGACTGTTT-CCAGATGGTAATCTAAGGTAAAAT  344
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAATGTAGATTTGAAAGGACTGTTTCCCAGATGGTAATCTAAGGTAAAAT  343

seq1  CAAAACATAATTCAGGTATAGAGTTGCAAACTCTCTAAGTTAGGACTGAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATAATTCAGGTATAGAGTTGCAAACTCTCTAAGTTAGGACTGAT  393

seq1  GTTAGAATAATGTAGCTAAATTGACAAGATTGATGGAATGGACTTTATTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAATAATGTAGCTAAATTGACAAGATTGATGGAATGGACTTTATTA  443

seq1  TCTTGATACTTTCCAAACAGACTCTCCTCGGAGCTTCTTGCATAAGGCCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATACTTTCCAAACAGACTCTCCTCGGAGCTTCTTGCATAAGGCCT  493

seq1  CCCAATCACTTGCTGTTGTATCTAGAGATATTGCTCACAATTGCAAAAAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCACTTGCTGTTGTATCTAGAGATATTGCTCACAATTGCAAAAAT  543

seq1  ACCCAACAGTGACTCTACAAATACATTTTTGTAATTTAAAATGTCCTAGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACAGTGACTCTACAAATACATTTTTGTAATTTAAAATGTCCTAGT  593

seq1  TCCAGGGTAAAGGCAAAAAGAAAAAATTTATTTTATAAAACTTAGGCCTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGTAAAGGCAAAAAGAAAAAATTTATTTTATAAAACTTAGGCCTA  643

seq1  TACACTGGCTGCCATTATACAATTGGAAAGCGGCAGAAAAATTAAGACAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGGCTGCCATTATACAATTGGAAAGCGGCAGAAAAATTAAGACAG  693

seq1  TGTTTAAATATTGCCCTGATGAGGCATGAATTGGATGTTGCCGGTTAGGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAATATTGCCCTGATGAGGCATGAATTGGATGTTGCCGGTTAGGT  743

seq1  TTCGTACTGTTTGGCCTTCCGTATGCCAATGGGGGCCTTGATGGAAAAGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTACTGTTTGGCCTTCCGTATGCCAATGGGGGCCTTGATGGAAAAGC  793

seq1  TTGGCCTCTCTAAGTGAAGACTTTGGCGGAAGGAAAGATTTAACTACAGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTCTCTAAGTGAAGACTTTGGCGGAAGGAAAGATTTAACTACAGT  843

seq1  TCAGCTTTCACGCAGATGGGAATTTAGAGGTTTTTATTTATTTTCATTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTCACGCAGATGGGAATTTAGAGGTTTTTATTTATTTTCATTTT  893

seq1  TTCCGTGTTGTGTGCATTCATCCATGTGGTGTATCGATATTCATGTGTAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTGTTGTGTGCATTCATCCATGTGGTGTATCGATATTCATGTGTAG  943

seq1  TGTGTGTGTGTGACAGGCTTGTGGAGACCTGAGGGTGACATCTTGGATCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGACAGGCTTGTGGAGACCTGAGGGTGACATCTTGGATCA  993

seq1  GAGTTCGCTGACACCAGCTAGTATAGCTTGCTATCTTGCCCCAGGGATCC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGCTGACACCAGCTAGTATAGCTTGCTATCTTGCCCCAGGGATCC  1043

seq1  CTTGTTTCCAACTTCCAAGTCCTGAATCACAGGCTTTGACACCCACACAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTCCAACTTCCAAGTCCTGAATCACAGGCTTTGACACCCACACAG  1093

seq1  CATTTCTGTGAATTC  1109
      |||||||||||||||
seq2  CATTTCTGTGAATTC  1108