BAC Information

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BAC

Clone NameB6Ng01-271N18
Chromosome10 (Build37)
Map Location 12,495,110 - 12,601,922
singlet/doubletdoublet
Overlap geneUtrn, LOC665172
Upstream genenone
Downstream geneStx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271N18.bB6Ng01-271N18.g
ACCGA073830GA073831
length2451,017
definitionB6Ng01-271N18.b B6Ng01-271N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,601,678 - 12,601,922)(12,495,110 - 12,496,110)
sequence
ttttgtagggcgcctgccaccagctcctgggcttctgtctctggctagtc
agaagggtgtaggcggggttccactctctctggaagaattctgctgtgac
ctatttcacctccactctagcttgtaggcttgcgtatcttgcttaaagag
aaaggatttagttttaggaaaatagacaaataagctgggttgagttttct
ttcttttcccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

gaattctgcttatactaagtgcctgggagaagtgaaccactacatgagtt
aggaatgctggaaggtacgctcttctttcagcaacaggaaaggtgacaat
gaaaggtggataaacaaaaggaaagcacctaagatgcagccttgggctta
accaggagagggttcatggccacagaagcctgaaagacttcagggtgtct
ccgttgttcccatctagaataaactgatgaatgatgaatatattccctag
acatcccatattatcagttaaacagaaaacaattccttcagtctagatgc
taaatccatgagggtcctgtcagccattagctagataggttctagccatc
tgatgccaattacaacatgaccccaaatcctattgcaaaaattgtgctgt
ctagagaaatgtcatattagtaacattatagaatttatggctttgttttg
gttttctttctttttttttttttttttgaagatgttagagatttaacatg
aaacctcatcagatagtcaagaccaggacacatatcaagaagctgaatcc
ccagccctgattgggtttggttttgtttattaaattggtttttagtgcat
tggtattatgaatgcttgtatttctgtgtgagggtgtcagacccctagaa
ttgaagttatagccagctgtgagctgacatgtgggtgctaggaactgtac
ctgggtcctttgcaaaagtggccagtgtggtcagtgttctcaaccactca
gccttctctccatccacccacaccagcccagtttttatactttttttaaa
aagatttatttatttattttatatatatgtaaatacactgtagctgactt
cagacaccaccaaaagaagcatcagatctcattttctggatgggttgttg
aggcccaccatggtggttgctgggattttgaaactcaaggacctttcaga
agaagcagtcagtgctcttaaaccgctgagtcatctcctccagccccttt
ttatactggtttttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_12601678_12601922
seq2: B6Ng01-271N18.b_54_298 (reverse)

seq1  CACACACACACACACACACACACACACACACACACGGGAAAAGAAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACGGGAAAAGAAAGAAA  50

seq1  ACTCAACCCAGCTTATTTGTCTATTTTCCTAAAACTAAATCCTTTCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACCCAGCTTATTTGTCTATTTTCCTAAAACTAAATCCTTTCTCTT  100

seq1  TAAGCAAGATACGCAAGCCTACAAGCTAGAGTGGAGGTGAAATAGGTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAGATACGCAAGCCTACAAGCTAGAGTGGAGGTGAAATAGGTCAC  150

seq1  AGCAGAATTCTTCCAGAGAGAGTGGAACCCCGCCTACACCCTTCTGACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAATTCTTCCAGAGAGAGTGGAACCCCGCCTACACCCTTCTGACTA  200

seq1  GCCAGAGACAGAAGCCCAGGAGCTGGTGGCAGGCGCCCTACAAAA  245
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGACAGAAGCCCAGGAGCTGGTGGCAGGCGCCCTACAAAA  245


seq1: chr10_12495110_12496110
seq2: B6Ng01-271N18.g_67_1083

seq1  GAATTCTGCTTATACTAAGTGCCTGGGAGAAGTGAACCACTACATGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTATACTAAGTGCCTGGGAGAAGTGAACCACTACATGAGTT  50

seq1  AGGAATGCTGGAAGGTACGCTCTTCTTTCAGCAACAGGAAAGGTGACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGCTGGAAGGTACGCTCTTCTTTCAGCAACAGGAAAGGTGACAAT  100

seq1  GAAAGGTGGATAAACAAAAGGAAAGCACCTAAGATGCAGCCTTGGGCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTGGATAAACAAAAGGAAAGCACCTAAGATGCAGCCTTGGGCTTA  150

seq1  ACCAGGAGAGGGTTCATGGCCACAGAAGCCTGAAAGACTTCAGGGTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAGAGGGTTCATGGCCACAGAAGCCTGAAAGACTTCAGGGTGTCT  200

seq1  CCGTTGTTCCCATCTAGAATAAACTGATGAATGATGAATATATTCCCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGTTCCCATCTAGAATAAACTGATGAATGATGAATATATTCCCTAG  250

seq1  ACATCCCATATTATCAGTTAAACAGAAAACAATTCCTTCAGTCTAGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCATATTATCAGTTAAACAGAAAACAATTCCTTCAGTCTAGATGC  300

seq1  TAAATCCATGAGGGTCCTGTCAGCCATTAGCTAGATAGGTTCTAGCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCATGAGGGTCCTGTCAGCCATTAGCTAGATAGGTTCTAGCCATC  350

seq1  TGATGCCAATTACAACATGACCCCAAATCCTATTGCAAAAATTGTGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCAATTACAACATGACCCCAAATCCTATTGCAAAAATTGTGCTGT  400

seq1  CTAGAGAAATGTCATATTAGTAACATTATAGAATTTATGGCTTTGTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAATGTCATATTAGTAACATTATAGAATTTATGGCTTTGTTTTG  450

seq1  GTTTTCTTTCTTTTTTTTTTTTTTTTTGAAGATGTTAGAGATTTAACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTTCTTTTTTTTTTTTTTTTTGAAGATGTTAGAGATTTAACATG  500

seq1  AAACCTCATCAGATAGTCAAGACCAGGACACATATCAAGAAGCTGAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCATCAGATAGTCAAGACCAGGACACATATCAAGAAGCTGAATCC  550

seq1  CCAGCCCTGATTGGGTTTGGTTTTGTTTATTAAATTGGTTTTTAGTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTGATTGGGTTTGGTTTTGTTTATTAAATTGGTTTTTAGTGCAT  600

seq1  TGGTATTATGAATGCTTGTATTTCTGTGTGAGGGTGTCAGACCCCTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTATGAATGCTTGTATTTCTGTGTGAGGGTGTCAGACCCCTAGAA  650

seq1  TTGAAGTTATAGCCAGCTGTGAGCTGACATGTGGGTGCTAGGAACTGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTATAGCCAGCTGTGAGCTGACATGTGGGTGCTAGGAACTGTAC  700

seq1  CTGGGTCCTTTGCAAAAGTGGCCAGTGTGGTCAGTGTTCTCAACCACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCTTTGCAAAAGTGGCCAGTGTGGTCAGTGTTCTCAACCACTCA  750

seq1  GCCTTCTCTCCATCCACCCACACCAGCCCAGTTTTTATACTTTTTTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTCTCCATCCACCCACACCAGCCCAGTTTTTATACTTTTTTTAAA  800

seq1  AAGATTTATTTATTTATTTTATATATATGTAAATACACTGTAGCTGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTATTTATTTATTTTATATATATGTAAATACACTGTAGCTGACTT  850

seq1  CAGACACCA-CAAAAGAAGCATCAGATCTCATTT--CGGAT-GGTTG-TG  895
      ||||||||| ||||||||||||||||||||||||   |||| ||||| ||
seq2  CAGACACCACCAAAAGAAGCATCAGATCTCATTTTCTGGATGGGTTGTTG  900

seq1  AG--CCACCAT-GTGGTTGCTGGGATTT--GAACTC-AGGACC-TTCAGA  938
      ||  ||||||| ||||||||||||||||   ||||| |||||| ||||||
seq2  AGGCCCACCATGGTGGTTGCTGGGATTTTGAAACTCAAGGACCTTTCAGA  950

seq1  AG-AGCAGTCAGTGCTCTT-AACCGCTGAGTCATCT-CTCCAGCCCC-TT  984
      || |||||||||||||||| |||||||||||||||| |||||||||| ||
seq2  AGAAGCAGTCAGTGCTCTTAAACCGCTGAGTCATCTCCTCCAGCCCCTTT  1000

seq1  TTATACTGTTTTTTGTT  1001
      |||||||| ||||||||
seq2  TTATACTGGTTTTTGTT  1017


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