BAC Information

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BAC

Clone NameB6Ng01-272I04
Chromosome10 (Build37)
Map Location 88,434,143 - 88,566,815
singlet/doubletdoublet
Overlap geneTmem16d
Upstream genePmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8
Downstream geneGas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272I04.bB6Ng01-272I04.g
ACCGA074319GA074320
length1,1271,121
definitionB6Ng01-272I04.b B6Ng01-272I04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,565,664 - 88,566,815)(88,434,143 - 88,435,273)
sequence
gaattccctcagccacatcctttaacttgggagtcagaagtctgtataag
aaaacactctcaagttgacattcactgggaagggaaagggcagataaggt
gaaagttctttgccccagagaatgaaagttcctttccttccttctgcccc
ctacagtataagagtattcgtcctttatgtggcccctgtccaggcactaa
tgtcagctgggctctcagccgggactgtgcactgcacacattcctttatg
aatgcatgtttcaaacctgttggatcccaggccctctgccaggcactcat
actcaaaaaggaataaatggcccagttatctattgttgcacaacaagcaa
ctccagtgtttgttgatcaaaacaacaggcatttgctttgctctcagatc
tgcagttgggcagggatgctcagtgacagattctcttggctccaccagac
atcactgcaatcagtcccactagatcctagagtggcccctgtccaggcac
taatgtcagctgggctctcagccgggactgtgcactgcacacattgcttt
ctttccatgtgtgtttctttccatgactgactgccttgtcacatgaccgc
cgaagccccaaggttgatgttcatttctgcagcatatcactacagcagtc
tctttaactgtgttgtactggtagaggcagaatccaaatttaaagacata
gattccacctcttgatggagtgcacaggaagattctggacgaggggtttg
acactgcaaacccttgctggaaagtgcagcctgcgctgtaagatcacgga
gctttagctacaacaaagaaacgaagcataaaacatagtctggaaagggt
ttgggggctggagagaaagctaagtggttaagagcactgactactcttcc
agaggtcctgagttcaatttcccagcaaccacatggtggctcatctgtat
gggatctaatgtctcttctggtgtgtctgagacagtatagtgtacatata
cacataaaatgataattcttgaaaaaagatttagctgattttttttttgg
tctgaaacactaggttataagtgtctcagagctaaagatatgctgggtct
aatgagaatgcactactggctgcattc
gaattccataccaaattcctgttcaaagagaagggtggtgttagttcctc
caggcgtagtgagaatgaaaacagcaagatgaatccacctgtgaaagtcc
tttttcatctttccaaatgcctctggcaacaaggcattattctctgtgtt
tccaaactgtttggaatggaaggaatttctgtaggtgtgtgcatatacca
atgtactcatggcttggggtcagcatcagtcaaagaagtctagctgccca
gtcattcatgtgccatctgataagatcggtacacagtgtcaaggcctagc
agactggacactcctcagtggtaatggctaggtctcctctgctcaccttt
gcagactgtctctgatgtgctggcacaagccgatgcccagtgagtaaaca
cttgcttcctttggacagtaagaggctactctgagcaaaacgtttgcatc
caggtcttagctacgctcactggctagtgcctcgctgccttgttctcagg
actggatgcaggcatgtatcagacagtctctattccagcggctctcgaga
gtgctacatctcgtgcagagcagtgctgcatcataacccaaagatcatca
aatcatatcaacataaacactaagaaatacaaactgaaaacaccccagga
taaaggatagcacttcttcatggtagaattaatgaataaacagaggagga
atggagatgatggaaagccaccattaattgactcagtagttttagccaaa
gctcaaagcccatctctgccattagagaagctaggttttgcttcatgtaa
ggaaaacactgagaaaaatgggggtatggtgggatggaagcaaatagatc
tgtttttaaaagttaatgaaccaatactttagattctgaagtcttatagc
agaatgaccaagctaagaatctatttagcacaaattcatgaagcactgga
atctaaagcaatcagtctgaatagtggctttatttcttgcacaatatatt
taaaacagtatagttgtttttttcttccagaatagcggatcagcttctca
tgaaacttgagattctaaggtgtgtgccttttatttttttagaattatac
atgtatgctatgtatggtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88565664_88566815
seq2: B6Ng01-272I04.b_47_1173 (reverse)

seq1  GAATGCCAAGCCCAGTAGTGGCTATTCTTCATTTAAGACCCAAGGCATAT  50
      ||||||  || |||||||||   |||| |||||  |||||||  ||||||
seq2  GAATGC--AG-CCAGTAGTG--CATTC-TCATT--AGACCCA--GCATAT  40

seq1  TCTTTTAGCTTCTGAGACACCTTATAACCCTAGTGTTTTCAGAACAAAAA  100
         |||||| ||||||||| ||||||| ||||||| ||||||| ||||||
seq2  --CTTTAGC-TCTGAGACA-CTTATAA-CCTAGTG-TTTCAGACCAAAAA  84

seq1  AAAAACCAAGCTAAATTCTTTTTTTTCAAAGAATTATTCATTTTATGTGT  150
      ||||| | ||||||| ||||||||    |||||||| |||||||||||||
seq2  AAAAATC-AGCTAAA-TCTTTTTT---CAAGAATTA-TCATTTTATGTGT  128

seq1  ATATGTACACTATACCTGTCTTCAGACACACCAGAAGAGGACATTAGATC  200
      |||||||||||||| ||||| ||||||||||||||||| |||||||||||
seq2  ATATGTACACTATA-CTGTC-TCAGACACACCAGAAGA-GACATTAGATC  175

seq1  CCATTACAGATGAGCCACCATGTGGTTGCTGGG-AATTGAACTCAGGACC  249
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCA-TACAGATGAGCCACCATGTGGTTGCTGGGAAATTGAACTCAGGACC  224

seq1  TCTGGAAGAGTAGTCAGTGCTCTTAACCACTTAGCTTTCTCTCCAGCCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGAGTAGTCAGTGCTCTTAACCACTTAGCTTTCTCTCCAGCCCC  274

seq1  CAAACCCTTTCCAGACTATGTTTTATGCTTCGTTTCTTTGTTGTAGCTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCTTTCCAGACTATGTTTTATGCTTCGTTTCTTTGTTGTAGCTAA  324

seq1  AGCTCCGTGATCTTACAGCGCAGGCTGCACTTTCCAGCAAGGGTTTGCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCGTGATCTTACAGCGCAGGCTGCACTTTCCAGCAAGGGTTTGCAG  374

seq1  TGTCAAACCCCTCGTCCAGAATCTTCCTGTGCACTCCATCAAGAGGTGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAACCCCTCGTCCAGAATCTTCCTGTGCACTCCATCAAGAGGTGGA  424

seq1  ATCTATGTCTTTAAATTTGGATTCTGCCTCTACCAGTACAACACAGTTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGTCTTTAAATTTGGATTCTGCCTCTACCAGTACAACACAGTTAA  474

seq1  AGAGACTGCTGTAGTGATATGCTGCAGAAATGAACATCAACCTTGGGGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGCTGTAGTGATATGCTGCAGAAATGAACATCAACCTTGGGGCT  524

seq1  TCGGCGGTCATGTGACAAGGCAGTCAGTCATGGAAAGAAACACACATGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCGGTCATGTGACAAGGCAGTCAGTCATGGAAAGAAACACACATGGA  574

seq1  AAGAAAGCAATGTGTGCAGTGCACAGTCCCGGCTGAGAGCCCAGCTGACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCAATGTGTGCAGTGCACAGTCCCGGCTGAGAGCCCAGCTGACA  624

seq1  TTAGTGCCTGGACAGGGGCCACTCTAGGATCTAGTGGGACTGATTGCAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCCTGGACAGGGGCCACTCTAGGATCTAGTGGGACTGATTGCAGT  674

seq1  GATGTCTGGTGGAGCCAAGAGAATCTGTCACTGAGCATCCCTGCCCAACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGGTGGAGCCAAGAGAATCTGTCACTGAGCATCCCTGCCCAACT  724

seq1  GCAGATCTGAGAGCAAAGCAAATGCCTGTTGTTTTGATCAACAAACACTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCTGAGAGCAAAGCAAATGCCTGTTGTTTTGATCAACAAACACTG  774

seq1  GAGTTGCTTGTTGTGCAACAATAGATAACTGGGCCATTTATTCCTTTTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCTTGTTGTGCAACAATAGATAACTGGGCCATTTATTCCTTTTTG  824

seq1  AGTATGAGTGCCTGGCAGAGGGCCTGGGATCCAACAGGTTTGAAACATGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAGTGCCTGGCAGAGGGCCTGGGATCCAACAGGTTTGAAACATGC  874

seq1  ATTCATAAAGGAATGTGTGCAGTGCACAGTCCCGGCTGAGAGCCCAGCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAAAGGAATGTGTGCAGTGCACAGTCCCGGCTGAGAGCCCAGCTG  924

seq1  ACATTAGTGCCTGGACAGGGGCCACATAAAGGACGAATACTCTTATACTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGTGCCTGGACAGGGGCCACATAAAGGACGAATACTCTTATACTG  974

seq1  TAGGGGGCAGAAGGAAGGAAAGGAACTTTCATTCTCTGGGGCAAAGAACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGGCAGAAGGAAGGAAAGGAACTTTCATTCTCTGGGGCAAAGAACT  1024

seq1  TTCACCTTATCTGCCCTTTCCCTTCCCAGTGAATGTCAACTTGAGAGTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTTATCTGCCCTTTCCCTTCCCAGTGAATGTCAACTTGAGAGTGT  1074

seq1  TTTCTTATACAGACTTCTGACTCCCAAGTTAAAGGATGTGGCTGAGGGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATACAGACTTCTGACTCCCAAGTTAAAGGATGTGGCTGAGGGAA  1124

seq1  TTC  1152
      |||
seq2  TTC  1127

seq1: chr10_88434143_88435273
seq2: B6Ng01-272I04.g_65_1185

seq1  GAATTCCATACCAAATTCCTGTTCAAAGAGAAGGGTGGTGTTAGTTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACCAAATTCCTGTTCAAAGAGAAGGGTGGTGTTAGTTCCTC  50

seq1  CAGGCGTAGTGAGAATGAAAACAGCAAGATGAATCCACCTGTGAAAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGTAGTGAGAATGAAAACAGCAAGATGAATCCACCTGTGAAAGTCC  100

seq1  TTTTTCATCTTTCCAAATGCCTCTGGCAACAAGGCATTATTCTCTGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATCTTTCCAAATGCCTCTGGCAACAAGGCATTATTCTCTGTGTT  150

seq1  TCCAAACTGTTTGGAATGGAAGGAATTTCTGTAGGTGTGTGCATATACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTGTTTGGAATGGAAGGAATTTCTGTAGGTGTGTGCATATACCA  200

seq1  ATGTACTCATGGCTTGGGGTCAGCATCAGTCAAAGAAGTCTAGCTGCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTCATGGCTTGGGGTCAGCATCAGTCAAAGAAGTCTAGCTGCCCA  250

seq1  GTCATTCATGTGCCATCTGATAAGATCGGTACACAGTGTCAAGGCCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCATGTGCCATCTGATAAGATCGGTACACAGTGTCAAGGCCTAGC  300

seq1  AGACTGGACACTCCTCAGTGGTAATGGCTAGGTCTCCTCTGCTCACCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGACACTCCTCAGTGGTAATGGCTAGGTCTCCTCTGCTCACCTTT  350

seq1  GCAGACTGTCTCTGATGTGCTGGCACAAGCCGATGCCCAGTGAGTAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTGTCTCTGATGTGCTGGCACAAGCCGATGCCCAGTGAGTAAACA  400

seq1  CTTGCTTCCTTTGGACAGTAAGAGGCTACTCTGAGCAAAACGTTTGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCCTTTGGACAGTAAGAGGCTACTCTGAGCAAAACGTTTGCATC  450

seq1  CAGGTCTTAGCTACGCTCACTGGCTAGTGCCTCGCTGCCTTGTTCTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTAGCTACGCTCACTGGCTAGTGCCTCGCTGCCTTGTTCTCAGG  500

seq1  ACTGGATGCAGGCATGTATCAGACAGTCTCTATTCCAGCGGCTCTCGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATGCAGGCATGTATCAGACAGTCTCTATTCCAGCGGCTCTCGAGA  550

seq1  GTGCTACATCTCGTGCAGAGCAGTGCTGCATCATAACCCAAAGATCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTACATCTCGTGCAGAGCAGTGCTGCATCATAACCCAAAGATCATCA  600

seq1  AATCATATCAACATAAACACTAAGAAATACAAACTGAAAACACCCCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATCAACATAAACACTAAGAAATACAAACTGAAAACACCCCAGGA  650

seq1  TAAAGGATAGCACTTCTTCATGGTAGAATTAATGAATAAACAGAGGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGATAGCACTTCTTCATGGTAGAATTAATGAATAAACAGAGGAGGA  700

seq1  ATGGAGATGATGGAAAGCCACCATTAATTGACTCAGTAGTTTTAGCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATGATGGAAAGCCACCATTAATTGACTCAGTAGTTTTAGCCAAA  750

seq1  GCTCAAAGCCCATCTCTGCCATTAGAGAAGCTAGGTTTTGCTTCATGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAGCCCATCTCTGCCATTAGAGAAGCTAGGTTTTGCTTCATGTAA  800

seq1  GGAAAACACTGAGAAAAATGGGGGTATGGTGGGATGGAAGCAAATAGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACACTGAGAAAAATGGGGGTATGGTGGGATGGAAGCAAATAGATC  850

seq1  TGTTTTTAAAAGTT-ATGAACCAATACTTTAGATTCTGAAGTCTTATAGC  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAAAAGTTAATGAACCAATACTTTAGATTCTGAAGTCTTATAGC  900

seq1  AGAAATGACCAAGCTAAGAATCTATTTAAGCACAAATTCATGAAGCACTG  949
      || |||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AG-AATGACCAAGCTAAGAATCTATTT-AGCACAAATTCATGAAGCACTG  948

seq1  GAAATCTAAAGCAATCAGTCTGAATAGGTGGCTTTATTTCTTGCACAATA  999
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  G-AATCTAAAGCAATCAGTCTGAATA-GTGGCTTTATTTCTTGCACAATA  996

seq1  TTATTTAAAACCAGTATAGTTGTTTTTTTCTT-CAGAAATTAGCCGAATC  1048
       ||||||||| ||||||||||||||||||||| |||||  ||| || |||
seq2  -TATTTAAAA-CAGTATAGTTGTTTTTTTCTTCCAGAA--TAG-CGGATC  1041

seq1  AGC-TCTCATGAAACCTTGAGGATTTCTAAAGTGTGTGGCTTTTAATTTT  1097
      ||| |||||||||| ||||||   |||||| ||||||| ||||||  |||
seq2  AGCTTCTCATGAAA-CTTGAG--ATTCTAAGGTGTGTGCCTTTTA--TTT  1086

seq1  TTTTAGTATGTATACATGTATG-TATGTAT-GTATG  1131
      |||||| || |||||||||||| ||||||| |||||
seq2  TTTTAGAAT-TATACATGTATGCTATGTATGGTATG  1121