BAC Information

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BAC

Clone NameB6Ng01-272K22
Chromosome10 (Build37)
Map Location 129,832,167 - 129,864,787
singlet/doubletdoublet
Overlap geneLOC100043719, EG623734
Upstream geneEG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4, 5830405N20Rik, EG625068
Downstream geneEG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272K22.bB6Ng01-272K22.g
ACCGA074448GA074449
length1,0361,199
definitionB6Ng01-272K22.b B6Ng01-272K22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,832,167 - 129,833,203)(129,863,609 - 129,864,787)
sequence
gaattctattgctaatgttagcatatactttatatttttcaatcatatct
agctggtatttgttttgaaatagtgctgtattgcattacattgcaacaac
acaagtgtttgtctgttatgctaatttatgtaacttggttacattacaat
gagtaaaatagatggagcattgaatttgatttgtaattctttgaactacc
ttatatttctgcctataatattcacactgccttaaatggagtctttaact
ccatttttgaaatggttggtatgtcactggcttataataaaatcttgtta
tggagtttattgtactatcttagttactatgaatatacatttgtttcata
catttgttgaattatgactttatcagtttgcatttttttcagtacttttg
gaaacctatagattggataaattgagtgtcttgttgtgatatcctatagt
ttttgtatactggacaataattccacatcaaatgaattaggaatgtgcat
ggaagctgactcttctctccattgtgactgctattgaactactgtgatgg
tttgtatattcttggaccagggagtggcaccatttggaggtgtggccttg
ttggaaaaggtgtgatccggttagagtaggtgtgtctctgtgagtgtggg
cataagatcctcaccctagttgcctggaagtcagtcttccactagcagcc
tttggaggaagacatagaactctcaactctgcctatggcatgctcctgcc
ttgaagataatggactgaacctctgaacctgtaagccagttccaattaaa
tgttttttataagacttgccttgatcatggtgtctgttcacagcagtaaa
accccaactaagacagaagttactaccagggactggggtattgctgtgat
aggcctgacaatgcttttatttgaaagaatgtggattttgggaactttgg
attggaaagcagtggaatgctttaaatggggcttaatgggtcatcctagt
agaatatggaagacttagttgctaggaggtatttga
gaattccagggtcaggaagcaggagtgggtgggttggggagcagggcagg
tggagggtataggggacttttggaataacatttgaaatgtaaatgaagaa
aaatctaataaaaatatgaaaaaagattattatgctgtttgatggtatta
acagttgaaactattaaaagcatattctacaaatatcatggaaatattat
tcataatcttcttactgtgaatgaaattagcatttttaaaacttttagct
tccagagtttttgttatttggaaatatgtaaaatattcttacctataaaa
taatttctctcccagaaacattgataatcttttttacgtaaactcagtgt
tccaaaacgtacacagttatataatgtgttttaaaaactctcacattatg
tcagatagtatcatataagggcttttgaatatatttcttaacgattcacc
tttttaaaattttgtgctgttttactaatcttaatttccaaagattattt
tgtatggagtgaatcaatttagtacttaacactaaacataagatcctcag
taatggacattattaaatacacattaatgatatttaaaggtacaaaacga
taagaatataaaagttgaacaaaatttagatgtattatttgattctgaaa
atatttaatatcattaagatgtttgatgcataaattgcatttaaataaca
aaaaaattaaggagaatttgttacgtatttcatatatggtataagtcatg
cttttccatgtatctgtggaattacaactccaaggttattttatagcatt
catactcaaaaggactgtaatctagttcaaggatgacattgagagataaa
ataaagtttattgattttcatgaatacaaaatttattatatagtagtgcc
gcaatgtctattaaactcttgaattgttattctgctctaacgattctctt
aatattatgaggcctagtttaaagacatttggaacagaaaatttagcatg
tcttcatactacaaactttactgcaatgaacttttaatatttcaaacatc
ttcttaaatcatccacttattgtctttgtttaagaatgcaagcaagagaa
atacgaagttgatctgggtaatgtttttggctacctgaatgaagatcaaa
caggatctggatctttacaaccaatctttgggcaatttccctgtcatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_129832167_129833203
seq2: B6Ng01-272K22.b_45_1080

seq1  GAATTCTATTGCTAATGTTAGCATATACTTTATATTTTTCAATCATATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGCTAATGTTAGCATATACTTTATATTTTTCAATCATATCT  50

seq1  AGCTGGTATTTGTTTTGAAATAGTGCTGTATTGCATTACATTGCAACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTATTTGTTTTGAAATAGTGCTGTATTGCATTACATTGCAACAAC  100

seq1  ACAAGTGTTTGTCTGTTATGCTAATTTATGTAACTTGGTTACATTACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTTTGTCTGTTATGCTAATTTATGTAACTTGGTTACATTACAAT  150

seq1  GAGTAAAATAGATGGAGCATTGAATTTGATTTGTAATTCTTTGAACTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAATAGATGGAGCATTGAATTTGATTTGTAATTCTTTGAACTACC  200

seq1  TTATATTTCTGCCTATAATATTCACACTGCCTTAAATGGAGTCTTTAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTCTGCCTATAATATTCACACTGCCTTAAATGGAGTCTTTAACT  250

seq1  CCATTTTTGAAATGGTTGGTATGTCACTGGCTTATAATAAAATCTTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTGAAATGGTTGGTATGTCACTGGCTTATAATAAAATCTTGTTA  300

seq1  TGGAGTTTATTGTACTATCTTAGTTACTATGAATATACATTTGTTTCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTTATTGTACTATCTTAGTTACTATGAATATACATTTGTTTCATA  350

seq1  CATTTGTTGAATTATGACTTTATCAGTTTGCATTTTTTTCAGTACTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTGAATTATGACTTTATCAGTTTGCATTTTTTTCAGTACTTTTG  400

seq1  GAAACCTATAGATTGGATAAATTGAGTGTCTTGTTGTGATATCCTATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTATAGATTGGATAAATTGAGTGTCTTGTTGTGATATCCTATAGT  450

seq1  TTTTGTATACTGGACAATAATTCCACATCAAATGAATTAGGAATGTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATACTGGACAATAATTCCACATCAAATGAATTAGGAATGTGCAT  500

seq1  GGAAGCTGACTCTTCTCTCCATTGTGACTGCTATTGAACTACTGTGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGACTCTTCTCTCCATTGTGACTGCTATTGAACTACTGTGATGG  550

seq1  TTTGTATATTCTTGGACCAGGGAGTGGCACCATTTGGAGGTGTGGCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATATTCTTGGACCAGGGAGTGGCACCATTTGGAGGTGTGGCCTTG  600

seq1  TTGGAAAAGGTGTGATCCGGTTAGAGTAGGTGTGTCTCTGTGAGTGTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAGGTGTGATCCGGTTAGAGTAGGTGTGTCTCTGTGAGTGTGGG  650

seq1  CATAAGATCCTCACCCTAGTTGCCTGGAAGTCAGTCTTCCACTAGCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGATCCTCACCCTAGTTGCCTGGAAGTCAGTCTTCCACTAGCAGCC  700

seq1  TTTGGAGGAAGACATAGAACTCTCAACTCTGCCTATGGCATGCTCCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGAAGACATAGAACTCTCAACTCTGCCTATGGCATGCTCCTGCC  750

seq1  TTGAAGATAATGGACTGAACCTCTGAACCTGTAAGCCAGTTCCAATTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATAATGGACTGAACCTCTGAACCTGTAAGCCAGTTCCAATTAAA  800

seq1  TGTTTTTTATAAGACTTGCCTTGATCATGGTGTCTGTTCACAGCAGTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTATAAGACTTGCCTTGATCATGGTGTCTGTTCACAGCAGTAAA  850

seq1  ACCCCAACTAAGACAGAAGTTACTACCAGGGACTGGGGTATTGCTGTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAACTAAGACAGAAGTTACTACCAGGGACTGGGGTATTGCTGTGAT  900

seq1  AGGCCTGACAATGCTTTTATTTGAAAGAATGTGGATTTT-GGAACTTTGG  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGGCCTGACAATGCTTTTATTTGAAAGAATGTGGATTTTGGGAACTTTGG  950

seq1  ATTTGGAAAGCAGTGGAATGCTTTAAATGGGGCTTAATGGGTCATCCTAG  999
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTGGAAAGCAGTGGAATGCTTTAAATGGGGCTTAATGGGTCATCCTAG  999

seq1  TAGGAATATGGAAGACTTAGTTGCTAGGAGGTATTTGA  1037
      || |||||||||||||||||||||||||||||||||||
seq2  TA-GAATATGGAAGACTTAGTTGCTAGGAGGTATTTGA  1036

seq1: chr10_129863609_129864787
seq2: B6Ng01-272K22.g_68_1266 (reverse)

seq1  CCATGACAGAGAA---TACCAAAGATGTGTTTGGTAAAAGATCAGGATTC  47
      ||||||||| |||     |||||||| || |||   |||||||  ||| |
seq2  CCATGACAGGGAAATTGCCCAAAGAT-TGGTTG--TAAAGATCCAGATCC  47

seq1  TTGTTGATC-TCA-TCA-GTAGCAAAAAACATTA-CCAGAACAAACTCGT  93
      |  |||||| ||| ||| ||||| |||||||||| ||||| |||  ||||
seq2  TGTTTGATCTTCATTCAGGTAGCCAAAAACATTACCCAGATCAACTTCGT  97

seq1  A-TTCTCTTGCTGGCATTCTAAAAC-AAGACA--TAGT-GATGATTAAGG  138
      | |||||||||| ||||||| |||| ||||||   ||| ||||||| | |
seq2  ATTTCTCTTGCTTGCATTCTTAAACAAAGACAATAAGTGGATGATTTAAG  147

seq1  AAGATGTTTGAAATA-TAAAAGTTCATTGCAGTAAAGTTTGTAGTATG-A  186
      ||||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  AAGATGTTTGAAATATTAAAAGTTCATTGCAGTAAAGTTTGTAGTATGAA  197

seq1  GACATGCTAAA-TTTCTG-TCCAAATGTCTTTAAACTA-GCCTCAT-ATA  232
      ||||||||||| |||||| ||||||||||||||||||| ||||||| |||
seq2  GACATGCTAAATTTTCTGTTCCAAATGTCTTTAAACTAGGCCTCATAATA  247

seq1  TT-AGAG-ATCGTTAGAGCAGAAT-ACAATTCAAGAGTTT-ATAGACA-T  277
      || |||| |||||||||||||||| ||||||||||||||| ||||||| |
seq2  TTAAGAGAATCGTTAGAGCAGAATAACAATTCAAGAGTTTAATAGACATT  297

seq1  GCGGCACTACTATATAATAAATTTTGTATTCATGAAAATCAATAAACTTT  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCACTACTATATAATAAATTTTGTATTCATGAAAATCAATAAACTTT  347

seq1  ATTTTATCTCTCAATGTCATCCTTGAACTAGATTACAGTCCTTTTGAGTA  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCTCTCAATGTCATCCTTGAACTAGATTACAGTCCTTTTGAGTA  397

seq1  TGAATGCTATAAAATAACCTTGGAGTTGTAATTCCACAGATACATGGAAA  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCTATAAAATAACCTTGGAGTTGTAATTCCACAGATACATGGAAA  447

seq1  AGCATGACTTATACCATATATGAAATACGTAACAAATTCTCCTTAATTTT  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGACTTATACCATATATGAAATACGTAACAAATTCTCCTTAATTTT  497

seq1  TTTGTTATTTAAATGCAATTTATGCATCAAACATCTTAATGATATTAAAT  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTTAAATGCAATTTATGCATCAAACATCTTAATGATATTAAAT  547

seq1  ATTTTCAGAATCAAATAATACATCTAAATTTTGTTCAACTTTTATATTCT  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGAATCAAATAATACATCTAAATTTTGTTCAACTTTTATATTCT  597

seq1  TATCGTTTTGTACCTTTAAATATCATTAATGTGTATTTAATAATGTCCAT  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGTTTTGTACCTTTAAATATCATTAATGTGTATTTAATAATGTCCAT  647

seq1  TACTGAGGATCTTATGTTTAGTGTTAAGTACTAAATTGATTCACTCCATA  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGGATCTTATGTTTAGTGTTAAGTACTAAATTGATTCACTCCATA  697

seq1  CAAAATAATCTTTGGAAATTAAGATTAGTAAAACAGCACAAAATTTTAAA  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATCTTTGGAAATTAAGATTAGTAAAACAGCACAAAATTTTAAA  747

seq1  AAGGTGAATCGTTAAGAAATATATTCAAAAGCCCTTATATGATACTATCT  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAATCGTTAAGAAATATATTCAAAAGCCCTTATATGATACTATCT  797

seq1  GACATAATGTGAGAGTTTTTAAAACACATTATATAACTGTGTACGTTTTG  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAATGTGAGAGTTTTTAAAACACATTATATAACTGTGTACGTTTTG  847

seq1  GAACACTGAGTTTACGTAAAAAAGATTATCAATGTTTCTGGGAGAGAAAT  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTGAGTTTACGTAAAAAAGATTATCAATGTTTCTGGGAGAGAAAT  897

seq1  TATTTTATAGGTAAGAATATTTTACATATTTCCAAATAACAAAAACTCTG  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATAGGTAAGAATATTTTACATATTTCCAAATAACAAAAACTCTG  947

seq1  GAAGCTAAAAGTTTTAAAAATGCTAATTTCATTCACAGTAAGAAGATTAT  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAAAAGTTTTAAAAATGCTAATTTCATTCACAGTAAGAAGATTAT  997

seq1  GAATAATATTTCCATGATATTTGTAGAATATGCTTTTAATAGTTTCAACT  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATATTTCCATGATATTTGTAGAATATGCTTTTAATAGTTTCAACT  1047

seq1  GTTAATACCATCAAACAGCATAATAATCTTTTTTCATATTTTTATTAGAT  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATACCATCAAACAGCATAATAATCTTTTTTCATATTTTTATTAGAT  1097

seq1  TTTTCTTCATTTACATTTCAAATGTTATTCCAAAAGTCCCCTATACCCTC  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCATTTACATTTCAAATGTTATTCCAAAAGTCCCCTATACCCTC  1147

seq1  CACCTGCCCTGCTCCCCAACCCACCCACTCCTGCTTCCTGACCCTGGAAT  1177
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCCTGCTCCCCAACCCACCCACTCCTGCTTCCTGACCCTGGAAT  1197

seq1  TC  1179
      ||
seq2  TC  1199