BAC Information

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BAC

Clone NameB6Ng01-274A09
Chromosome10 (Build37)
Map Location 48,129,919 - 48,157,885
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042387, LOC100041663, LOC100042398
Downstream geneLOC546562, LOC100041689, Grik2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274A09.bB6Ng01-274A09.g
ACCGA075436GA075437
length1,1711,158
definitionB6Ng01-274A09.b B6Ng01-274A09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,129,919 - 48,131,096)(48,156,708 - 48,157,885)
sequence
gaattctgtttggctaggaatagctgagtcttttgtgacattttccatag
gcttcaatgtttatttctgctcataatcagtagtttatagagaacacatt
ggattttgaatctggtcttaattttctatgttagaccctgttatacaagt
tttgggaagggtagctgataggactattaaggagtaaaccatgagtttac
taatggacttctctggttttggtgactaggcataatgaggcaacagaaag
acatttgaaaatagaaaactcaaaaagtattcttgcagttctattagcac
tccatacattgttgctgccagatggattggtggatgaggactcattacat
aatttaatagcatttagaaacctactagaatatcacatcaatctaaaatc
tttagaacatttcaataccctgtaaaggatctccatattcatcagcagtt
atatcccattatttttctcagtttaacaatatatttcagatgaatgaagg
tactttatctgtaatctttgtgaatagcttcttatatttagccaatgaat
tcactatttgctttttataacatttttcagaacttcaatatccttttcct
ctttgaatatttagttgtttaaatagaaagtaaaacacagggctttatat
tcatatatttggtttgtgtctataatcctgctattgtgaatgaagctaat
gcatacttagtgtatatgtcttcttatgcatttattttcagaattctaga
tataagattaatgagaatactgctgaataactgcatttttatttgaggat
ccctttagagccggcagtatgatgttcaaacacagctatcatcttaagag
agggctgagtaactaccatagattcaagaatgtcatatttacctgagaat
ttcataattaagaatacgtacaattagagttttatacctcccttgcagac
ttgtcttgattgcttttggttttattctttttgaaatttgaaatactagt
tattttaagagccattcttacactgtcttccctctagacagagcagcttg
tttggtagcagcaaatactctggatttttatatttgctttcaaatctcta
tcacccacccactgactacaatcactatactcaggagattagcattgcct
ctcgaaaatatgtaattcagg

gaattccctatcctgtttatcaaggtcactttaattatctaagctgaact
ttttcttcaagactgccctaaaaaagaaagctagtgataggataaattat
aaaacacaaatatggtgattttggtagataactatatcatcccagaaaaa
cacagcactgtcaggtagcaatatcatcctgataaaaaggtcgctttttg
gtcacagcattaagagttttgctttctcacagcatcaaaaccctctttag
gaaaatccatcacagtaaaaccggatttgttaactgaatattcatcaagg
agaatgatgaaagatgtactgagaggcaactaccaacccagaccattaac
ccaatagagctgtttgggcatgatacaaatagaaacaaataccttttatg
ataaaatgaggtaaaggaatttttgccactgaagcacttctacagataat
tgaagagatgtttactgaaaaaaaaatccttttctaagagcactaagaga
aagaacctaagctggaacaataactaagcaagtaagaatgaagtaaaaaa
cacaaatactaaagaattagtaaaatgtttcaataacaactgaatgttca
taataccaccttctcaagcaaatgatcagctactggtaattgggataaaa
atcaggacgtgtcaatttgttgcctgaaagaaataaagctcattattaaa
cagaggcattacactctggttaaaaattagcaaatatggcaagaaaatca
acctaagacacaaacaagtgctgctattctaacacctgataaaacagact
acacaacaacattaatagaaaagcataaagaggtcactttacactcatta
tgtaaacagtttatcagcagtacatcacaactatagatgtatgtaacctg
aacacaggaacatataattttataaaataacctcatgattcacccaatac
aagagtattgtgtaatatctctacttcagtctcatcaattggaagatcat
ctaacaaatcataaattaaaaaatataagacggatttatatctctgataa
taatactcagtgatagcatagatcatcattctatgtcaacataagagaat
tgaggcctcctgtactataatgttcattagtaatgttttatgcaacgaag
taagtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_48129919_48131096
seq2: B6Ng01-274A09.b_48_1218

seq1  GAATTCTGTTTGGCTAGGAATAGCTGAGTCTTTTGTGACATTTTCCATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTGGCTAGGAATAGCTGAGTCTTTTGTGACATTTTCCATAG  50

seq1  GCTTCAATGTTTATTTCTGCTCATAATCAGTAGTTTATAGAGAACACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAATGTTTATTTCTGCTCATAATCAGTAGTTTATAGAGAACACATT  100

seq1  GGATTTTGAATCTGGTCTTAATTTTCTATGTTAGACCCTGTTATACAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTGAATCTGGTCTTAATTTTCTATGTTAGACCCTGTTATACAAGT  150

seq1  TTTGGGAAGGGTAGCTGATAGGACTATTAAGGAGTAAACCATGAGTTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAAGGGTAGCTGATAGGACTATTAAGGAGTAAACCATGAGTTTAC  200

seq1  TAATGGACTTCTCTGGTTTTGGTGACTAGGCATAATGAGGCAACAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGACTTCTCTGGTTTTGGTGACTAGGCATAATGAGGCAACAGAAAG  250

seq1  ACATTTGAAAATAGAAAACTCAAAAAGTATTCTTGCAGTTCTATTAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAAAATAGAAAACTCAAAAAGTATTCTTGCAGTTCTATTAGCAC  300

seq1  TCCATACATTGTTGCTGCCAGATGGATTGGTGGATGAGGACTCATTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACATTGTTGCTGCCAGATGGATTGGTGGATGAGGACTCATTACAT  350

seq1  AATTTAATAGCATTTAGAAACCTACTAGAATATCACATCAATCTAAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATAGCATTTAGAAACCTACTAGAATATCACATCAATCTAAAATC  400

seq1  TTTAGAACATTTCAATACCCTGTAAAGGATCTCCATATTCATCAGCAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAACATTTCAATACCCTGTAAAGGATCTCCATATTCATCAGCAGTT  450

seq1  ATATCCCATTATTTTTCTCAGTTTAACAATATATTTCAGATGAATGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCATTATTTTTCTCAGTTTAACAATATATTTCAGATGAATGAAGG  500

seq1  TACTTTATCTGTAATCTTTGTGAATAGCTTCTTATATTTAGCCAATGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATCTGTAATCTTTGTGAATAGCTTCTTATATTTAGCCAATGAAT  550

seq1  TCACTATTTGCTTTTTATAACATTTTTCAGAACTTCAATATCCTTTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATTTGCTTTTTATAACATTTTTCAGAACTTCAATATCCTTTTCCT  600

seq1  CTTTGAATATTTAGTTGTTTAAATAGAAAGTAAAACACAGGGCTTTATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATATTTAGTTGTTTAAATAGAAAGTAAAACACAGGGCTTTATAT  650

seq1  TCATATATTTGGTTTGTGTCTATAATCCTGCTATTGTGAATGAAGCTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATTTGGTTTGTGTCTATAATCCTGCTATTGTGAATGAAGCTAAT  700

seq1  GCATACTTAGTGTATATGTCTTCTTATGCATTTATTTTCAGAATTCTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTTAGTGTATATGTCTTCTTATGCATTTATTTTCAGAATTCTAGA  750

seq1  TATAAGATTAATGAGAATACTGCTGAATAACTGCATTTTTATTTGAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGATTAATGAGAATACTGCTGAATAACTGCATTTTTATTTGAGGAT  800

seq1  CCCTTTAGAGCCGGCAGTATGATGTTCAAACACAGCTATCATCTTAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAGAGCCGGCAGTATGATGTTCAAACACAGCTATCATCTTAAGAG  850

seq1  AGGGCTGAGTAACTACCATAGATTCAAGAATGTCATATTTACCTGAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGAGTAACTACCATAGATTCAAGAATGTCATATTTACCTGAGAAT  900

seq1  TTCATAATTAAGAATACGTACAATTAGAGTTTTATACCTCCCTTGCAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAATTAAGAATACGTACAATTAGAGTTTTATACCTCCCTTGCAGAC  950

seq1  TTGTCTTGATTGCTTTTGGTTTTATTCTTTTTTGAAATTTGAAAATACTA  1000
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  TTGTCTTGATTGCTTTTGGTTTTATTC-TTTTTGAAATTTG-AAATACTA  998

seq1  GTTATTTTAAGAGCCATTCTTACCACTGTCTTCCCTCTAGAACAAGAGCA  1050
      |||||||||||||||||||||| ||||||||||||||||||   ||||||
seq2  GTTATTTTAAGAGCCATTCTTA-CACTGTCTTCCCTCTAGA--CAGAGCA  1045

seq1  GCTTGTTT-GTAGCCAGGAAATACTCTGG-TTTTTATATTTGCTTTTCAA  1098
      |||||||| |||| ||| ||||||||||| ||||||||||||| ||||||
seq2  GCTTGTTTGGTAG-CAGCAAATACTCTGGATTTTTATATTTGC-TTTCAA  1093

seq1  ATCTCTATTCACCACCCACTGACTTACCATCACTATACTCCAAGAGATTA  1148
      ||||||||   |||||||||||| ||| ||||||||||| || |||||||
seq2  ATCTCTATCACCCACCCACTGAC-TACAATCACTATACT-CAGGAGATTA  1141

seq1  GCATTG-CTCTCCAAAAATAATGTAA-TCAGG  1178
      |||||| ||||| ||||   |||||| |||||
seq2  GCATTGCCTCTCGAAAA--TATGTAATTCAGG  1171


seq1: chr10_48156708_48157885
seq2: B6Ng01-274A09.g_66_1223 (reverse)

seq1  AAAACTTACTTCG-TGCACTAAAACATATACTAATGAACATTTTATAGTT  49
      ||||||||||||| |||| |||||||| ||||||||||||  ||||||| 
seq2  AAAACTTACTTCGTTGCA-TAAAACAT-TACTAATGAACA--TTATAGT-  45

seq1  ACCCAAGAAGCTTCAAAATTCTCTTATGTTGACATAGAATGATTGATCTA  99
         || || || ||  |||||||||||||||||||||||||| |||||||
seq2  --ACAGGAGGCCTC--AATTCTCTTATGTTGACATAGAATGA-TGATCTA  90

seq1  TGCTATCACTGAGTTATTAATTAATCAAGAGATATTAAATTCCCCTCTTA  149
      ||||||||||||| |||||  | ||| ||||||| |||||  || |||||
seq2  TGCTATCACTGAG-TATTA--TTATC-AGAGATA-TAAAT--CCGTCTTA  133

seq1  TTATTTTTTTAAATTTATGATTTGTTAAGATGATCTTCCAATTGATGAGA  199
       ||||||||  ||||||||||||||| |||||||||||||||||||||||
seq2  -TATTTTTT--AATTTATGATTTGTT-AGATGATCTTCCAATTGATGAGA  179

seq1  CTGAAGTAGAGATATTACACAATACTCTTGTATTGGGTGAATCATGAGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTAGAGATATTACACAATACTCTTGTATTGGGTGAATCATGAGGT  229

seq1  TATTTTATAAAATTATATGTTCCTGTGTTCAGGTTACATACATCTATAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATAAAATTATATGTTCCTGTGTTCAGGTTACATACATCTATAGT  279

seq1  TGTGATGTACTGCTGATAAACTGTTTACATAATGAGTGTAAAGTGACCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTACTGCTGATAAACTGTTTACATAATGAGTGTAAAGTGACCTC  329

seq1  TTTATGCTTTTCTATTAATGTTGTTGTGTAGTCTGTTTTATCAGGTGTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCTTTTCTATTAATGTTGTTGTGTAGTCTGTTTTATCAGGTGTTA  379

seq1  GAATAGCAGCACTTGTTTGTGTCTTAGGTTGATTTTCTTGCCATATTTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCAGCACTTGTTTGTGTCTTAGGTTGATTTTCTTGCCATATTTGC  429

seq1  TAATTTTTAACCAGAGTGTAATGCCTCTGTTTAATAATGAGCTTTATTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTAACCAGAGTGTAATGCCTCTGTTTAATAATGAGCTTTATTTC  479

seq1  TTTCAGGCAACAAATTGACACGTCCTGATTTTTATCCCAATTACCAGTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGCAACAAATTGACACGTCCTGATTTTTATCCCAATTACCAGTAG  529

seq1  CTGATCATTTGCTTGAGAAGGTGGTATTATGAACATTCAGTTGTTATTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCATTTGCTTGAGAAGGTGGTATTATGAACATTCAGTTGTTATTGA  579

seq1  AACATTTTACTAATTCTTTAGTATTTGTGTTTTTTACTTCATTCTTACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTACTAATTCTTTAGTATTTGTGTTTTTTACTTCATTCTTACTT  629

seq1  GCTTAGTTATTGTTCCAGCTTAGGTTCTTTCTCTTAGTGCTCTTAGAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTTATTGTTCCAGCTTAGGTTCTTTCTCTTAGTGCTCTTAGAAAA  679

seq1  GGATTTTTTTTTCAGTAAACATCTCTTCAATTATCTGTAGAAGTGCTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTTTTTCAGTAAACATCTCTTCAATTATCTGTAGAAGTGCTTCA  729

seq1  GTGGCAAAAATTCCTTTACCTCATTTTATCATAAAAGGTATTTGTTTCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAAAATTCCTTTACCTCATTTTATCATAAAAGGTATTTGTTTCTA  779

seq1  TTTGTATCATGCCCAAACAGCTCTATTGGGTTAATGGTCTGGGTTGGTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATCATGCCCAAACAGCTCTATTGGGTTAATGGTCTGGGTTGGTAG  829

seq1  TTGCCTCTCAGTACATCTTTCATCATTCTCCTTGATGAATATTCAGTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTCAGTACATCTTTCATCATTCTCCTTGATGAATATTCAGTTAA  879

seq1  CAAATCCGGTTTTACTGTGATGGATTTTCCTAAAGAGGGTTTTGATGCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCGGTTTTACTGTGATGGATTTTCCTAAAGAGGGTTTTGATGCTG  929

seq1  TGAGAAAGCAAAACTCTTAATGCTGTGACCAAAAAGCGACCTTTTTATCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGCAAAACTCTTAATGCTGTGACCAAAAAGCGACCTTTTTATCA  979

seq1  GGATGATATTGCTACCTGACAGTGCTGTGTTTTTCTGGGATGATATAGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATATTGCTACCTGACAGTGCTGTGTTTTTCTGGGATGATATAGTT  1029

seq1  ATCTACCAAAATCACCATATTTGTGTTTTATAATTTATCCTATCACTAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCAAAATCACCATATTTGTGTTTTATAATTTATCCTATCACTAGC  1079

seq1  TTTCTTTTTTAGGGCAGTCTTGAAGAAAAAGTTCAGCTTAGATAATTAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTAGGGCAGTCTTGAAGAAAAAGTTCAGCTTAGATAATTAAA  1129

seq1  GTGACCTTGATAAACAGGATAGGGAATTC  1178
      |||||||||||||||||||||||||||||
seq2  GTGACCTTGATAAACAGGATAGGGAATTC  1158


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