BAC Information

Click to search

BAC

Clone NameB6Ng01-274A13
Chromosome10 (Build37)
Map Location 10,868,903 - 10,993,731
singlet/doubletdoublet
Overlap geneShprh
Upstream geneLOC665110, 9130014G24Rik, Rab32, EG382450, Grm1
Downstream geneFbxo30, Epm2a, EG666732, LOC100039343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274A13.bB6Ng01-274A13.g
ACCGA075444GA075445
length1,1701,097
definitionB6Ng01-274A13.b B6Ng01-274A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,992,575 - 10,993,731)(10,868,903 - 10,869,994)
sequence
gaattcccaaccaagctgcccacaaatggactcagctccttatgtgctat
gaatatacatatttgccttgtctgttttggcatagatatttttctttgta
tttttaatttttttatagagtaaatgttgcagtaaatctccaacccaaat
aagcccaggcaaagaaaatacagctcaatcgatgtgaatgcaagctgcgt
gcctagattgggcagatgtaccactacactaccttcttccctatctaaga
gacccattataacttgtggtttctgcagacaatgtgcttctgctccactt
tccttccaccacctctgtcattcttcttccctctccttctctcccaaact
ttcagcttcgccttcccttctcctgcccaatcgttggctctagcctttat
tttacagattaaggtggagagaaggtccacaagaagtcacccagtactga
ctccttcctgttcaaaatagcttccaggagagtggaattagcatcaaaat
acaatcagccccagggctacctgcaacagaagtccatttttaaaacatac
aagtatgtatgtgctgcgtgggcttgcgtgcgtgcctgcttgcttttatg
ttaggccaggtatcaactctgcattcttcaagcactgaccattgtcctct
cccctcttttctgagacaaagtctctcattggcctggaacttgccatgtg
gtctaggctggctggtccctgagccacagggatctgcatatctctgcctc
cctagcactgtgattacaaagccctaaacctggctctttatttatttttt
taattaatttttaaaccatggaatctggagattaaattccagtcttcatt
ctccacatacattgtttagaaaccaaatccaggcatggtgctattttctc
atgtatatataaaagttgacttttggtttgtttctgtatcacagtatttt
tttataataatggatcatataatgcatcagatcagtatttatatattccc
aaattttctataataatattcattttgaaaatcagaaaacaaaaattaaa
cccctattgttggtaagagttgatttgtgccccatttttttttaaatgtt
gggactatatttttcagtagcctcacctaccattaaacaatcctaagttt
caagtccaggaacatatgtt
gaattccgttttatgtaactttctgcctttttatgaaaaccacaactcac
atcaagcctaccgctctggcaaagagccccgccctctctggcaagaggtc
ccgccccttctttcgggccccgcccatcctgcatttgctaaagccacggg
aggcggggaaaagagagaggcacaaccaccgcgagacttaaaccgtcttc
taccgggacctcagggacgggacatgcgcagaggtgctttttgaagccaa
caccggaaagaggggcggagcgtcccgactggtcctgcgcgttcgcctgg
agcgagcgctcctgctggcctcctcagctggcgctggcggcttccggcct
gggtgccaggcttcacccagcgtgcagcgcgcatgcgcaactcccgcagg
tgagtgtggcgactgtgggcccgggatctgcagcctgcgaggagggccgg
gcccggcgacaggtgcctgcagagcggctgaggtaggtgagggtgcgtgc
gggctctggggttagagtcgcggcggagggaggctggctctgcgcgtcag
ggaaactccgagggctcctgcgcagctccgggatccggagtgatcggccc
tgcgaggccccgcggctcggccccagcccggacgtgggccgagcccttct
cgcgtgggacgggtgcttgctgcccacgcttgcgtgctgaggccctgtca
cgagctgtccctccggctccttcttcgaggataacttgccttgcaggctg
gcggtgcgtgggacgacaggtagctgggagggatgcagaggccgccaagt
taggctggcaaactctcaagcattacagtcgcctgcagaagcgccctggc
tcctgtgcattgtgtgcactttgacgctgcaggtagcgctaggttggtga
acgaagatgttggtttctggttaaggtaccctgtgggaggaacgggtatt
gtttacagtcttgccttttcaccgtggtgccttttaatcccacttgggct
tgaatttatcatgccaagtctattgttttctcctacgtgttggccttgct
cctgttatttgctaagttcccatgaatcgctaaccaccactttattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_10992575_10993731
seq2: B6Ng01-274A13.b_28_1197 (reverse)

seq1  AACATATGT--CTTG-CTTGAAACTTAG--ATGTTTAATGGTAGGTGA-G  44
      |||||||||  || | ||||||||||||   ||||||||||||||||| |
seq2  AACATATGTTCCTGGACTTGAAACTTAGGATTGTTTAATGGTAGGTGAGG  50

seq1  CT-CTGAAAATTATAGTTCC-ACATTTTAAAAAAAATGGGGCACAAATCA  92
      || ||||||| |||||| || |||||| ||||||||||||||||||||||
seq2  CTACTGAAAAATATAGTCCCAACATTTAAAAAAAAATGGGGCACAAATCA  100

seq1  ACTTCTTA-CAAC-ATAGGGGTTTAATTTT--GTTTCTGATTTTTCAAAA  138
      || ||||| |||| ||||||||||||||||   ||||||| |||||||||
seq2  AC-TCTTACCAACAATAGGGGTTTAATTTTTGTTTTCTGA-TTTTCAAAA  148

seq1  TGAATATTA-TATAGAAAATTT-GGAATATATAAATACTGATCTGATGCA  186
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  TGAATATTATTATAGAAAATTTGGGAATATATAAATACTGATCTGATGCA  198

seq1  TTATATGATCCATTATTAT-AAAAAATACTGTGATACAGAAACAAACCAA  235
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTATATGATCCATTATTATAAAAAAATACTGTGATACAGAAACAAACCAA  248

seq1  AAGTCAACTTTTATATATACATGAGAAAATAGCACCATGCCTGGATTTGG  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAACTTTTATATATACATGAGAAAATAGCACCATGCCTGGATTTGG  298

seq1  TTTCTAAACAATGTATGTGGAGAATGAAGACTGGAATTTAATCTCCAGAT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAACAATGTATGTGGAGAATGAAGACTGGAATTTAATCTCCAGAT  348

seq1  TCCATGGTTTAAAAATTAATTAAAAAAATAAATAAAGAGCCAGGTTTAGG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGTTTAAAAATTAATTAAAAAAATAAATAAAGAGCCAGGTTTAGG  398

seq1  GCTTTGTAATCACAGTGCTAGGGAGGCAGAGATATGCAGATCCCTGTGGC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTAATCACAGTGCTAGGGAGGCAGAGATATGCAGATCCCTGTGGC  448

seq1  TCAGGGACCAGCCAGCCTAGACCACATGGCAAGTTCCAGGCCAATGAGAG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGACCAGCCAGCCTAGACCACATGGCAAGTTCCAGGCCAATGAGAG  498

seq1  ACTTTGTCTCAGAAAAGAGGGGAGAGGACAATGGTCAGTGCTTGAAGAAT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTCTCAGAAAAGAGGGGAGAGGACAATGGTCAGTGCTTGAAGAAT  548

seq1  GCAGAGTTGATACCTGGCCTAACATAAAAGCAAGCAGGCACGCACGCAAG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTTGATACCTGGCCTAACATAAAAGCAAGCAGGCACGCACGCAAG  598

seq1  CCCACGCAGCACATACATACTTGTATGTTTTAAAAATGGACTTCTGTTGC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGCAGCACATACATACTTGTATGTTTTAAAAATGGACTTCTGTTGC  648

seq1  AGGTAGCCCTGGGGCTGATTGTATTTTGATGCTAATTCCACTCTCCTGGA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCCCTGGGGCTGATTGTATTTTGATGCTAATTCCACTCTCCTGGA  698

seq1  AGCTATTTTGAACAGGAAGGAGTCAGTACTGGGTGACTTCTTGTGGACCT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTTGAACAGGAAGGAGTCAGTACTGGGTGACTTCTTGTGGACCT  748

seq1  TCTCTCCACCTTAATCTGTAAAATAAAGGCTAGAGCCAACGATTGGGCAG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCACCTTAATCTGTAAAATAAAGGCTAGAGCCAACGATTGGGCAG  798

seq1  GAGAAGGGAAGGCGAAGCTGAAAGTTTGGGAGAGAAGGAGAGGGAAGAAG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGAAGGCGAAGCTGAAAGTTTGGGAGAGAAGGAGAGGGAAGAAG  848

seq1  AATGACAGAGGTGGTGGAAGGAAAGTGGAGCAGAAGCACATTGTCTGCAG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAGAGGTGGTGGAAGGAAAGTGGAGCAGAAGCACATTGTCTGCAG  898

seq1  AAACCACAAGTTATAATGGGTCTCTTAGATAGGGAAGAAGGTAGTGTAGT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACAAGTTATAATGGGTCTCTTAGATAGGGAAGAAGGTAGTGTAGT  948

seq1  GGTACATCTGCCCAATCTAGGCACGCAGCTTGCATTCACATCGATTGAGC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATCTGCCCAATCTAGGCACGCAGCTTGCATTCACATCGATTGAGC  998

seq1  TGTATTTTCTTTGCCTGGGCTTATTTGGGTTGGAGATTTACTGCAACATT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTCTTTGCCTGGGCTTATTTGGGTTGGAGATTTACTGCAACATT  1048

seq1  TACTCTATAAAAAAATTAAAAATACAAAGAAAAATATCTATGCCAAAACA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTATAAAAAAATTAAAAATACAAAGAAAAATATCTATGCCAAAACA  1098

seq1  GACAAGGCAAATATGTATATTCATAGCACATAAGGAGCTGAGTCCATTTG  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGCAAATATGTATATTCATAGCACATAAGGAGCTGAGTCCATTTG  1148

seq1  TGGGCAGCTTGGTTGGGAATTC  1157
      ||||||||||||||||||||||
seq2  TGGGCAGCTTGGTTGGGAATTC  1170

seq1: chr10_10868903_10869994
seq2: B6Ng01-274A13.g_66_1162

seq1  GAATTCCGTTTTATGTAACTTTCTGCCTTTTTATGAAAACCACAACTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTTTTATGTAACTTTCTGCCTTTTTATGAAAACCACAACTCAC  50

seq1  ATCAAGCCTACCGCTCTGGCAAAGAGCCCCGCCCTCTCTGGCAAGAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCCTACCGCTCTGGCAAAGAGCCCCGCCCTCTCTGGCAAGAGGTC  100

seq1  CCGCCCCTTCTTTCGGGCCCCGCCCATCCTGCATTTGCTAAAGCCACGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCTTCTTTCGGGCCCCGCCCATCCTGCATTTGCTAAAGCCACGGG  150

seq1  AGGCGGGGAAAAGAGAGAGGCACAACCACCGCGAGACTTAAACCGTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGGGAAAAGAGAGAGGCACAACCACCGCGAGACTTAAACCGTCTTC  200

seq1  TACCGGGACCTCAGGGACGGGACATGCGCAGAGGTGCTTTTTGAAGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGGGACCTCAGGGACGGGACATGCGCAGAGGTGCTTTTTGAAGCCAA  250

seq1  CACCGGAAAGAGGGGCGGAGCGTCCCGACTGGTCCTGCGCGTTCGCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGAAAGAGGGGCGGAGCGTCCCGACTGGTCCTGCGCGTTCGCCTGG  300

seq1  AGCGAGCGCTCCTGCTGGCCTCCTCAGCTGGCGCTGGCGGCTTCCGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGCGCTCCTGCTGGCCTCCTCAGCTGGCGCTGGCGGCTTCCGGCCT  350

seq1  GGGTGCCAGGCTTCACCCAGCGTGCAGCGCGCATGCGCAACTCCCGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCAGGCTTCACCCAGCGTGCAGCGCGCATGCGCAACTCCCGCAGG  400

seq1  TGAGTGTGGCGACTGTGGGCCCGGGATCTGCAGCCTGCGAGGAGGGCCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGGCGACTGTGGGCCCGGGATCTGCAGCCTGCGAGGAGGGCCGG  450

seq1  GCCCGGCGACAGGTGCCTGCAGAGCGGCTGAGGTAGGTGAGGGTGCGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGCGACAGGTGCCTGCAGAGCGGCTGAGGTAGGTGAGGGTGCGTGC  500

seq1  GGGCTCTGGGGTTAGAGTCGCGGCGGAGGGAGGCTGGCTCTGCGCGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTGGGGTTAGAGTCGCGGCGGAGGGAGGCTGGCTCTGCGCGTCAG  550

seq1  GGAAACTCCGAGGGCTCCTGCGCAGCTCCGGGATCCGGAGTGATCGGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTCCGAGGGCTCCTGCGCAGCTCCGGGATCCGGAGTGATCGGCCC  600

seq1  TGCGAGGCCCCGCGGCTCGGCCCCAGCCCGGACGTGGGCCGAGCCCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGGCCCCGCGGCTCGGCCCCAGCCCGGACGTGGGCCGAGCCCTTCT  650

seq1  CGCGTGGGACGGGTGCTTGCTGCCCACGCTTGCGTGCTGAGGCCCTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTGGGACGGGTGCTTGCTGCCCACGCTTGCGTGCTGAGGCCCTGTCA  700

seq1  CGAGCTGTCCCTCCGGCTCCTTCTTCGAGGATAACTTGCCTTGCAGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTGTCCCTCCGGCTCCTTCTTCGAGGATAACTTGCCTTGCAGGCTG  750

seq1  GCGGTGCGTGGGACGACAGGTAGCTGGGAGGGATGCAGAGGCCGCCAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGCGTGGGACGACAGGTAGCTGGGAGGGATGCAGAGGCCGCCAAGT  800

seq1  TAGGCTGGCAAACTCTCAAGCATTACAGTCGCCTGCAGAAGCGCCCTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGGCAAACTCTCAAGCATTACAGTCGCCTGCAGAAGCGCCCTGGC  850

seq1  TCCTGTGCATTGTGTGCACTTTGACGCTGCAGGTAGCGCTAGGTTGGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGCATTGTGTGCACTTTGACGCTGCAGGTAGCGCTAGGTTGGTGA  900

seq1  ACGAAGATGTTGGTTTCTGGTTAAGGTACCCTGTGGGAGGAAC-GGTATT  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACGAAGATGTTGGTTTCTGGTTAAGGTACCCTGTGGGAGGAACGGGTATT  950

seq1  GTTTACAGTCTTGCCTTTTCACCGTGGTGCCTTTTAAT-CCACTT-GGCT  997
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  GTTTACAGTCTTGCCTTTTCACCGTGGTGCCTTTTAATCCCACTTGGGCT  1000

seq1  TGAATTTATCATGGCAAGTCTATGTTTTTCTCCTACGTGTTTGCCTTTGC  1047
      ||||||||||||| |||||||||  |||||||||||||||| ||| ||||
seq2  TGAATTTATCATGCCAAGTCTATTGTTTTCTCCTACGTGTTGGCC-TTGC  1049

seq1  TCCTG-TATTTGCCTAGGTCCCATG-ATCGCTAA-CACCACTTTATTC  1092
      ||||| |||||||  || ||||||| |||||||| |||||||||||||
seq2  TCCTGTTATTTGCTAAGTTCCCATGAATCGCTAACCACCACTTTATTC  1097