BAC Information

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BAC

Clone NameB6Ng01-274L07
Chromosome7 (Build37)10 (Build37)
Map Location 80,340,991 - 80,341,27866,260,063 - 66,260,968
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMctp2, LOC100042880, LOC233391, LOC665570, LOC100042029, EG384643, LOC625243
Downstream gene4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2, LOC100042127, LOC100042140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274L07.bB6Ng01-274L07.g
ACCGA075940GA075941
length1,001890
definitionB6Ng01-274L07.b B6Ng01-274L07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,340,991 - 80,341,278)(66,260,063 - 66,260,968)
sequence
gaattccatgccagcacccatacagcagaaaactgactctgccatgttgt
tctatggcctccgtttacagccatggtacgtttctcccctgactcccaca
catatttttaaaaagtttaatacataaacttaaaaaaaaagataataatc
tgtcccaagtccctgtgcttgctaggcacgctctatgccactgagccaca
ttctcaggtcaactgtacattttgtcttttttcttttcttttcatgaatt
taattattttttttttaggtttttcgagacagggtttctctgtgtagctc
tggctggcctcgaactcagaaattcgcctgcctcttcctcccaagtgcta
ggagtaaaggcgtgtgccaccacgcccggctttaaaattattttttaatt
aaaaaatttttcatactatatattttttcacatttttctctcctctaact
cctctctgattctccttgcctccctaaccatccaattttatgtttcctct
ctctctttaaaaaacagaaacaaaacaaagcaaaacaacgccccctacac
aaaatgaaaatcaaaacaggcaaaaaaaaaaaaaaaaaaaaagcccaaat
gaagcagtatgaaaaacaccactgaatccatttcatgtggcccaactgcc
tcaagccgtggggcttcccctgaagtgtggctaatatgcccagtgagact
ccactggagaacatggattttccctttgctagggggtatgcattacagtt
agcttcttgggtaaggttgggagcccatgtccacttcccctacttagtgt
ggggacactgtcggacgtgcagatctcatgcacattgctatagtctctgt
gagttcatatatgttacgcttttagtgtctggggaaaccctgtcatcttg
gagtcattcactacctctgcctcttagaatctttctgcccttctcttctg
catagatccccgagggtcaagggaagagatttcatgaagacatcccattt
g

gaattccattacagagagacagggaaagcaatgtgtaccgatacagtggt
atcccggacagtttatgaattttaaaaggcaacgtgtaggaaagaactgc
cgtgcatctcgtttagcattttgattaaaaagaagaagccatacatagct
atacgtttgcatacagaatttttctgacgcttctaaggcacgggctatga
gggaataccacctggagagggtcagaggcagaagctgggttatttctgcc
tctaaatctctgagttctatgctttgcagaggtttttttttttttttaaa
tacgaagacagtcttgtttggtgctgttgctttgtgtgtgatgtttcaac
ccctgcgtcttgctcgagggcagagatgatccccagggcaccaagcaaag
agcgggtgcttcggatgtttctattataaagtaaagagtgtagaaaagaa
ctcacgttgggcaaataattcttttgaaaaccaaaatacctgcccagaaa
gacagaaccactgggggagggttttccatcctgcctaccccctgatcaga
gggactacaaagtgattagaaagctggtcaccatgacacacaactgtaat
cttagctcccaagaggctgaaacaggaggatgctgagttgaaggacaagc
taaatgataaagcaagatcaaggccagtctggatacacagtgagaccctg
tctcagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaagaaagaaagaaagaaagacagagagagagagagagaggg
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagag
agagagagagagagagagagagggagggaaggaaaggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_80340991_80341278
seq2: B6Ng01-274L07.b_140_420

seq1  ACACATATTTTTAAAAA----TATAGAAATAGTT------TGTTATATTT  40
      |||||||||||||||||     ||| | | | ||          ||| | 
seq2  ACACATATTTTTAAAAAGTTTAATACATAAACTTAAAAAAAAAGATAATA  50

seq1  ATTTGTATATACACACATCCATACTTTGCGTGC-ATACACGTGCATATGC  89
      || |||     | ||  |||   || ||| ||| |  ||||  | |||||
seq2  ATCTGT-----CCCAAGTCC---CTGTGCTTGCTAGGCACGCTC-TATGC  91

seq1  TAGAGTG-CACA----CATGT----TATAGAATTTAATTCTCACCTTTTT  130
       |  | | ||||    || ||    | || | |||   | |   ||||| 
seq2  CACTGAGCCACATTCTCAGGTCAACTGTACATTTTGTCTTTTTTCTTTTC  141

seq1  TGTT--TG--TTTGTTTGTTTTGTTTT---GTTTTTCGAAACAGGGTTTC  173
      | ||  ||  |||  || |||| ||||   ||||||||| ||||||||||
seq2  TTTTCATGAATTTAATTATTTTTTTTTTAGGTTTTTCGAGACAGGGTTTC  191

seq1  TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTGGATCAAGCCTCGA  223
      |||||||||| |||||||                         |||||||
seq2  TCTGTGTAGCTCTGGCTG-------------------------GCCTCGA  216

seq1  ACTCAGAAATTCACCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCGT  273
      |||||||||||| ||||||||| ||||||||||||| | | |||||||||
seq2  ACTCAGAAATTCGCCTGCCTCTTCCTCCCAAGTGCTAGGAGTAAAGGCGT  266

seq1  GTGCCACCATGCCCG  288
      ||||||||| |||||
seq2  GTGCCACCACGCCCG  281


seq1: chr10_66260063_66260968
seq2: B6Ng01-274L07.g_68_957

seq1  GAATTCCATTACAGAGAGACAGGGAAAGCAATGTGTACCGATACAGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTACAGAGAGACAGGGAAAGCAATGTGTACCGATACAGTGGT  50

seq1  ATCCCGGACAGTTTATGAATTTTAAAAGGCAACGTGTAGGAAAGAACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGGACAGTTTATGAATTTTAAAAGGCAACGTGTAGGAAAGAACTGC  100

seq1  CGTGCATCTCGTTTAGCATTTTGATTAAAAAGAAGAAGCCATACATAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCATCTCGTTTAGCATTTTGATTAAAAAGAAGAAGCCATACATAGCT  150

seq1  ATACGTTTGCATACAGAATTTTTCTGACGCTTCTAAGGCACGGGCTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTTTGCATACAGAATTTTTCTGACGCTTCTAAGGCACGGGCTATGA  200

seq1  GGGAATACCACCTGGAGAGGGTCAGAGGCAGAAGCTGGGTTATTTCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATACCACCTGGAGAGGGTCAGAGGCAGAAGCTGGGTTATTTCTGCC  250

seq1  TCTAAATCTCTGAGTTCTATGCTTTGCAGAGGTTTTTTTTTTTTTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATCTCTGAGTTCTATGCTTTGCAGAGGTTTTTTTTTTTTTTTAAA  300

seq1  TACGAAGACAGTCTTGTTTGGTGCTGTTGCTTTGTGTGTGATGTTTCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAAGACAGTCTTGTTTGGTGCTGTTGCTTTGTGTGTGATGTTTCAAC  350

seq1  CCCTGCGTCTTGCTCGAGGGCAGAGATGATCCCCAGGGCACCAAGCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCGTCTTGCTCGAGGGCAGAGATGATCCCCAGGGCACCAAGCAAAG  400

seq1  AGCGGGTGCTTCGGATGTTTCTATTATAAAGTAAAGAGTGTAGAAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGTGCTTCGGATGTTTCTATTATAAAGTAAAGAGTGTAGAAAAGAA  450

seq1  CTCACGTTGGGCAAATAATTCTTTTGAAAACCAAAATACCTGCCCAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGTTGGGCAAATAATTCTTTTGAAAACCAAAATACCTGCCCAGAAA  500

seq1  GACAGAACCACTGGGGGAGGGTTTTCCATCCTGCCTACCCCCTGATCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAACCACTGGGGGAGGGTTTTCCATCCTGCCTACCCCCTGATCAGA  550

seq1  GGGACTACAAAGTGATTAGAAAGCTGGTCACCATGACACACAACTGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTACAAAGTGATTAGAAAGCTGGTCACCATGACACACAACTGTAAT  600

seq1  CTTAGCTCCCAAGAGGCTGAAACAGGAGGATGCTGAGTTGAAGGACAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTCCCAAGAGGCTGAAACAGGAGGATGCTGAGTTGAAGGACAAGC  650

seq1  TAAATGATAAAGCAAGATCAAGGCCAGTCTGGATACACAGTGAGACCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATAAAGCAAGATCAAGGCCAGTCTGGATACACAGTGAGACCCTG  700

seq1  TCTCAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  750

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGACAGAGAGAGAGAGAGAGAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGACAGAGAGAGAGAGAGAGAGGG  800

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAG  850

seq1  AGAGAGAGAGAGAGAGAGAGAGGGAGGG-AGGAAAGGAAGGAAGTAAGGA  899
      |||||||||||||||||||||||||||| |||||||||||          
seq2  AGAGAGAGAGAGAGAGAGAGAGGGAGGGAAGGAAAGGAAG----------  890

seq1  AAGGAAG  906
             
seq2  -------  890


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