BAC Information

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BAC

Clone NameB6Ng01-275D13
Chromosome10 (Build37)
Map Location 111,679,361 - 111,819,966
singlet/doubletdoublet
Overlap geneKcnc2
Upstream geneOsbpl8, Bbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2
Downstream geneLOC100042639, 4921506J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275D13.bB6Ng01-275D13.g
ACCGA076320GA076321
length907976
definitionB6Ng01-275D13.b B6Ng01-275D13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,819,061 - 111,819,966)(111,679,361 - 111,679,911)
sequence
gaattctattctatttctttatgtgcaaaactcttcaaggcacaactgcc
acaatttgtcctgactagcttgggtcacaatgaaacttctcctaggaaga
cttagccctcttgcatcagaattatatagattggtacctggtcactggtc
tgtttttgttagttttcatcacttctaagcaaaattattttaaaatctaa
tgaaaattctaactatcctccacagattcacaatgaatgtaagtataata
ttttgcagaccccaaactatccctggactctctgctttggatcatctatt
taagcttcccatggaaattgatatgtttcttgaaagcaacagctacaagg
tactttcttttgtgtccccttctgtgcctggcatggtgcagagacccacc
gtgtcagagaacccaggatgtttggtaatgagactcaacaggattctaag
aggaacccatcaaactcccatttgtccacataaaaacattgtgtgcattt
tgcagaagccaaagtgtaggacactgtaacttcataaaagcatccaaggc
agtttagtacctctgtgtcagggtccctgagaaacaaactccaaagctag
ctgcacaacctccatgtctgtggtcaagaaaatgtctgaaggcaactgaa
ggagagctgtcactcacactccacctcctgcatgaccagaagacagctcc
ttcctagggttgtgactggaatcacttaatataaaaatgataatagaatg
accaaaagaaccaggacattccacagttaaagcagacttctagaaatcga
tgttatttcttccttaagtcatatacttttctttgtcagattcaaactag
atacttcactctgctgtaactagtgagacaggtaggtagataggtaggta
gggtagg

gaattctcttctttcctgactctttattccacatcagcaggtaagacatg
tgctggaacatcaagactgttcacatgtttggccagtttcccctcggtta
ttttttctggcataaaggtgaagaactgtggattgtcagtctcagaacag
gctctaagataggttcagaattcttgaatcaccttcaacatcattagaaa
gtatagtctggaaaccagggaaacaagcatgtagaagaagttaaagttcg
gctccagttgactttggcatgctactcccgcacattgctcctctggagag
tggggccaaatctcaagaggaccagagaagttaagtgtgaaatgctgagg
ctaaggtagaagtggtggccactgagccctcctatccaggtctatcagtg
gttgtcttagtcattgtttctattcctgcacaaacatcatgacgcagaag
caagttggggaggaaagggtttattcggcttacacttccatactgctgtt
catcaccaagggagtcaggactggaacttaagcaggtcaggaagcaggag
ctgatgcagaggccatggagggatgttctttacaggcttgcatcccctgg
cttgctcagcctgctctcttacagaacccaagactgctagtccagagatg
gcaccacccacaaggggcctttcccccttgatcactaattgggaaaatgc
cttacagttgtatctcatggaggcatttcctcaactgaagctcctttctc
tgtgataactccagctgtgtcaagttaacacaaaactagccagtacaggt
atgttgtggcttcattttcattaaaccctaaaaagtccttaaattctttc
tttattccttccttgaccaaggtatcattgagaaaagtgttgtttagttt
ccacgtgaatattggctttctattatttatgtgtattgaagatcagcctt
agtccatggtgatctgataggatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_111819061_111819966
seq2: B6Ng01-275D13.b_41_947 (reverse)

seq1  CCTA-CCTACCTACCTATCTACCTACCTGTCTCACTAGTTACAGCAGAGT  49
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCTACCTACCTATCTACCTACCTGTCTCACTAGTTACAGCAGAGT  50

seq1  GAAGTATCTAGTTTGAATCTGACAAAGAAAAGTATATGACTTAAGGAAGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATCTAGTTTGAATCTGACAAAGAAAAGTATATGACTTAAGGAAGA  100

seq1  AATAACATCGATTTCTAGAAGTCTGCTTTAACTGTGGAATGTCCTGGTTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATCGATTTCTAGAAGTCTGCTTTAACTGTGGAATGTCCTGGTTC  150

seq1  TTTTGGTCATTCTATTATCATTTTTATATTAAGTGATTCCAGTCACAACC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTCATTCTATTATCATTTTTATATTAAGTGATTCCAGTCACAACC  200

seq1  CTAGGAAGGAGCTGTCTTCTGGTCATGCAGGAGGTGGAGTGTGAGTGACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAGGAGCTGTCTTCTGGTCATGCAGGAGGTGGAGTGTGAGTGACA  250

seq1  GCTCTCCTTCAGTTGCCTTCAGACATTTTCTTGACCACAGACATGGAGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCTTCAGTTGCCTTCAGACATTTTCTTGACCACAGACATGGAGGT  300

seq1  TGTGCAGCTAGCTTTGGAGTTTGTTTCTCAGGGACCCTGACACAGAGGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGCTAGCTTTGGAGTTTGTTTCTCAGGGACCCTGACACAGAGGTA  350

seq1  CTAAACTGCCTTGGATGCTTTTATGAAGTTACAGTGTCCTACACTTTGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTGCCTTGGATGCTTTTATGAAGTTACAGTGTCCTACACTTTGGC  400

seq1  TTCTGCAAAATGCACACAATGTTTTTATGTGGACAAATGGGAGTTTGATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAAAATGCACACAATGTTTTTATGTGGACAAATGGGAGTTTGATG  450

seq1  GGTTCCTCTTAGAATCCTGTTGAGTCTCATTACCAAACATCCTGGGTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTCTTAGAATCCTGTTGAGTCTCATTACCAAACATCCTGGGTTCT  500

seq1  CTGACACGGTGGGTCTCTGCACCATGCCAGGCACAGAAGGGGACACAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACGGTGGGTCTCTGCACCATGCCAGGCACAGAAGGGGACACAAAA  550

seq1  GAAAGTACCTTGTAGCTGTTGCTTTCAAGAAACATATCAATTTCCATGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTACCTTGTAGCTGTTGCTTTCAAGAAACATATCAATTTCCATGGG  600

seq1  AAGCTTAAATAGATGATCCAAAGCAGAGAGTCCAGGGATAGTTTGGGGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAAATAGATGATCCAAAGCAGAGAGTCCAGGGATAGTTTGGGGTC  650

seq1  TGCAAAATATTATACTTACATTCATTGTGAATCTGTGGAGGATAGTTAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATATTATACTTACATTCATTGTGAATCTGTGGAGGATAGTTAGA  700

seq1  ATTTTCATTAGATTTTAAAATAATTTTGCTTAGAAGTGATGAAAACTAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTAGATTTTAAAATAATTTTGCTTAGAAGTGATGAAAACTAAC  750

seq1  AAAAACAGACCAGTGACCAGGTACCAATCTATATAATTCTGATGCAAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGACCAGTGACCAGGTACCAATCTATATAATTCTGATGCAAGAG  800

seq1  GGCTAAGTCTTCCTAGGAGAAGTTTCATTGTGACCCAAGCTAGTCAGGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGTCTTCCTAGGAGAAGTTTCATTGTGACCCAAGCTAGTCAGGAC  850

seq1  AAATTGTGGCAGTTGTGCCTTGAAGAGTTTTGCACATAAAGAAATAGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTGGCAGTTGTGCCTTGAAGAGTTTTGCACATAAAGAAATAGAAT  900

seq1  AGAATTC  906
      |||||||
seq2  AGAATTC  907


seq1: chr10_111679361_111679911
seq2: B6Ng01-275D13.g_63_613

seq1  GAATTCTCTTCTTTCCTGACTCTTTATTCCACATCAGCAGGTAAGACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTTTCCTGACTCTTTATTCCACATCAGCAGGTAAGACATG  50

seq1  TGCTGGAACATCAAGACTGTTCACATGTTTGGCCAGTTTCCCCTCGGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAACATCAAGACTGTTCACATGTTTGGCCAGTTTCCCCTCGGTTA  100

seq1  TTTTTTCTGGCATAAAGGTGAAGAACTGTGGATTGTCAGTCTCAGAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTGGCATAAAGGTGAAGAACTGTGGATTGTCAGTCTCAGAACAG  150

seq1  GCTCTAAGATAGGTTCAGAATTCTTGAATCACCTTCAACATCATTAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAGATAGGTTCAGAATTCTTGAATCACCTTCAACATCATTAGAAA  200

seq1  GTATAGTCTGGAAACCAGGGAAACAAGCATGTAGAAGAAGTTAAAGTTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTCTGGAAACCAGGGAAACAAGCATGTAGAAGAAGTTAAAGTTCG  250

seq1  GCTCCAGTTGACTTTGGCATGCTACTCCCGCACATTGCTCCTCTGGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGTTGACTTTGGCATGCTACTCCCGCACATTGCTCCTCTGGAGAG  300

seq1  TGGGGCCAAATCTCAAGAGGACCAGAGAAGTTAAGTGTGAAATGCTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCAAATCTCAAGAGGACCAGAGAAGTTAAGTGTGAAATGCTGAGG  350

seq1  CTAAGGTAGAAGTGGTGGCCACTGAGCCCTCCTATCCAGGTCTATCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTAGAAGTGGTGGCCACTGAGCCCTCCTATCCAGGTCTATCAGTG  400

seq1  GTTGTCTTAGTCATTGTTTCTATTCCTGCACAAACATCATGACGCAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTTAGTCATTGTTTCTATTCCTGCACAAACATCATGACGCAGAAG  450

seq1  CAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACACTTCCATACTGCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACACTTCCATACTGCTGTT  500

seq1  CATCACCAAGGGAGTCAGGACTGGAACTTAAGCAGGTCAGGAAGCAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCAAGGGAGTCAGGACTGGAACTTAAGCAGGTCAGGAAGCAGGAG  550

seq1  C  551
      |
seq2  C  551


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