BAC Information

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BAC

Clone NameB6Ng01-275M23
Chromosome10 (Build37)
Map Location 103,329,739 - 103,497,103
singlet/doubletdoublet
Overlap genenone
Upstream geneCart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292, LOC100042383
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275M23.bB6Ng01-275M23.g
ACCGA076749GA076750
length1,092949
definitionB6Ng01-275M23.b B6Ng01-275M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,496,021 - 103,497,103)(103,329,739 - 103,330,641)
sequence
gaattctgcgccctcatttttgctatggaacattaaagttatttaaggag
acgaatgagttttcttgaattccatttattctgctatcattagttcctca
cgtcaaatgatatttctatacttgtcaactccaaatgccaataataataa
taataataataataataataataataataaatcctaagtgattaacattc
tgctaaagtacctatttcctacctgtaaacttaaggggaaaacactttaa
tgtttcaaaattatctgagatctgttgtaataagtaagagaaggaatatg
tcattttttctgatagtaagcaattttacctattttgacatgcttgtgga
aaggctgcatggttgatttttgaaaacatggtttgattttgatgaagatt
atgctaatattggtgcaatactgaaaaaaataacctaattcttttaacac
aaagataaatatttaacaagttaatgcatgtgataaaatgctttaaaata
tctctgctcacagaattctgaattaaagtattactttttttgtataatgc
agttggtggcaaaagtatagaaggagcttggagggaataggtttcctaaa
tgagattaatatatatatatgtagtagcttccagtttaatgtaacctgaa
ctcttatagaaagtgttgacttagcttgaaagctgagacacttggcagat
gtagatatgaattttcttctagccacaattaccaagactggacagaagta
attctctcttgatatgctttggctctacattcttttttgtacattctctg
cttttactcccagatctgtcaatctcctgcatttacacatgctttaagct
ctctgtttaaaaagaaatataatttcatccagtgaacctttacatataag
tgataagtagtgtgtgtgtatgtgtatggtgtgagtgtgcacatgcatgc
atgtgtatctatctgtatgtgtgctgtgcctctatttttaaatttctcca
ttaacctcaatttgtagcctagaatgtgttcttggaatgaatgttcctct
ggtctccaatctcggagggaatgaaaacaaaccctgttaatg
gaattctaattaataacttatcacctgggctgtttagggaggaagcaggc
tgatgcttttcttcttagtttgagctgcatttaaacaagacaggtgggtg
gacacatggataaagtgcctagagcgaggtgttagctgcagactcgacat
ggtaggcatgtgggcaggtaccaaggaactctctcaacttggcccctgaa
attttcataatataataatgagagtaaactgtattctgaatctcctactc
cagggtccctggagggcagctgagtgaagagcaaacctcccagcattttg
ttaatcttgccaaccgactctctgtgctgtttctgtgaatatttaggcct
tagtagaacatggctagcttgacataataaagtttttagaatcaaaaaaa
aaaagggtcgccatcttggtccgggacccgccgaacttaggaaattagtc
tgaacaggtgagagggtgcgccagagaacctgacagcttctggaacaggc
ggaagcacagaggcgctgaggcagcaccctttgtgggccggggacagcca
gccactgtccggaccggaggacaggtgcccacccggctggggaggcggcc
taagccacagcagcagcggtcgccatcttggtcccgggactccaaggaac
ttaggaatttagtctgcttaggtgagagtctgtaccacctgggaactgcc
aaagcaacacagtgtctgagaaaggtcctgttttgggccttcttcttcgg
ccaggaggaggtccaaatacaagatatctgcgcaccttccctgtaagaga
gcttgccagcagagagtgctctgagcactgaaactcagaggagagaatct
gtctcccaggtctgctgatagacggtaacagaatcaccagaagaacaatc
tctaaacagagtcaactataactactaactccagagattaccagatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_103496021_103497103
seq2: B6Ng01-275M23.b_48_1139 (reverse)

seq1  CATTAACA-GGTTTGTTTTCATT-CCTCAGAGATT-GAGACAAGAGGAAC  47
      |||||||| |||||||||||||| |||| |||||| ||||| ||||||||
seq2  CATTAACAGGGTTTGTTTTCATTCCCTCCGAGATTGGAGACCAGAGGAAC  50

seq1  ATTCATT-CAAG-ACACA-TCTAGGCTACAAATGGA-GATAATGGGGAAA  93
      ||||||| |||| ||||| |||||||||||||| || | |||||| ||||
seq2  ATTCATTCCAAGAACACATTCTAGGCTACAAATTGAGGTTAATGGAGAAA  100

seq1  TT--AAAATAGAGGCACAGCACACATACAGATAGATACACATGCATGCAT  141
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATAGAGGCACAGCACACATACAGATAGATACACATGCATGCAT  150

seq1  GTGCACACTCACA-CATACACATACACACACACTACTTATCACTTATATG  190
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTGCACACTCACACCATACACATACACACACACTACTTATCACTTATATG  200

seq1  TAAAGGTTCACTGGATGAAATTATATTTCTTTTTAAACAGAGAGCTTAAA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTTCACTGGATGAAATTATATTTCTTTTTAAACAGAGAGCTTAAA  250

seq1  GCATGTGTAAATGCAGGAGATTGACAGATCTGGGAGTAAAAGCAGAGAAT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTAAATGCAGGAGATTGACAGATCTGGGAGTAAAAGCAGAGAAT  300

seq1  GTACAAAAAAGAATGTAGAGCCAAAGCATATCAAGAGAGAATTACTTCTG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAAAAGAATGTAGAGCCAAAGCATATCAAGAGAGAATTACTTCTG  350

seq1  TCCAGTCTTGGTAATTGTGGCTAGAAGAAAATTCATATCTACATCTGCCA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCTTGGTAATTGTGGCTAGAAGAAAATTCATATCTACATCTGCCA  400

seq1  AGTGTCTCAGCTTTTCAAGCTAAGTCAACACTTTCTATAAGAGTTCAGGT  440
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTCAGC-TTTCAAGCTAAGTCAACACTTTCTATAAGAGTTCAGGT  449

seq1  TACATTAAACTGGAAGCTACTACATATATATATATTAATCTCATTTAGGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAAACTGGAAGCTACTACATATATATATATTAATCTCATTTAGGA  499

seq1  AACCTATTCCCTCCAAGCTCCTTCTATACTTTTGCCACCAACTGCATTAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATTCCCTCCAAGCTCCTTCTATACTTTTGCCACCAACTGCATTAT  549

seq1  ACAAAAAAAGTAATACTTTAATTCAGAATTCTGTGAGCAGAGATATTTTA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAGTAATACTTTAATTCAGAATTCTGTGAGCAGAGATATTTTA  599

seq1  AAGCATTTTATCACATGCATTAACTTGTTAAATATTTATCTTTGTGTTAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTTATCACATGCATTAACTTGTTAAATATTTATCTTTGTGTTAA  649

seq1  AAGAATTAGGTTATTTTTTTCAGTATTGCACCAATATTAGCATAATCTTC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAGGTTATTTTTTTCAGTATTGCACCAATATTAGCATAATCTTC  699

seq1  ATCAAAATCAAACCATGTTTTCAAAAATCAACCATGCAGCCTTTCCACAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATCAAACCATGTTTTCAAAAATCAACCATGCAGCCTTTCCACAA  749

seq1  GCATGTCAAAATAGGTAAAATTGCTTACTATCAGAAAAAATGACATATTC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCAAAATAGGTAAAATTGCTTACTATCAGAAAAAATGACATATTC  799

seq1  CTTCTCTTACTTATTACAACAGATCTCAGATAATTTTGAAACATTAAAGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTACTTATTACAACAGATCTCAGATAATTTTGAAACATTAAAGT  849

seq1  GTTTTCCCCTTAAGTTTACAGGTAGGAAATAGGTACTTTAGCAGAATGTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCCCTTAAGTTTACAGGTAGGAAATAGGTACTTTAGCAGAATGTT  899

seq1  AATCACTTAGGATTTATTATTATTATTATTATTATTATTATTATTATTAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTTAGGATTTATTATTATTATTATTATTATTATTATTATTATTAT  949

seq1  TATTGGCATTTGGAGTTGACAAGTATAGAAATATCATTTGACGTGAGGAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCATTTGGAGTTGACAAGTATAGAAATATCATTTGACGTGAGGAA  999

seq1  CTAATGATAGCAGAATAAATGGAATTCAAGAAAACTCATTCGTCTCCTTA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGATAGCAGAATAAATGGAATTCAAGAAAACTCATTCGTCTCCTTA  1049

seq1  AATAACTTTAATGTTCCATAGCAAAAATGAGGGCGCAGAATTC  1083
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTTAATGTTCCATAGCAAAAATGAGGGCGCAGAATTC  1092

seq1: chr10_103329739_103330641
seq2: B6Ng01-275M23.g_63_965

seq1  GAATTCTAATTAATAACTTATCACCTGGGCTGTTTAGGGAGGAAGCAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTAATAACTTATCACCTGGGCTGTTTAGGGAGGAAGCAGGC  50

seq1  TGATGCTTTTCTTCTTAGTTTGAGCTGCATTTAAACAAGACAGGTGGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTTTCTTCTTAGTTTGAGCTGCATTTAAACAAGACAGGTGGGTG  100

seq1  GACACATGGATAAAGTGCCTAGAGCGAGGTGTTAGCTGCAGACTCGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATGGATAAAGTGCCTAGAGCGAGGTGTTAGCTGCAGACTCGACAT  150

seq1  GGTAGGCATGTGGGCAGGTACCAAGGAACTCTCTCAACTTGGCCCCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGCATGTGGGCAGGTACCAAGGAACTCTCTCAACTTGGCCCCTGAA  200

seq1  ATTTTCATAATATAATAATGAGAGTAAACTGTATTCTGAATCTCCTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATAATATAATAATGAGAGTAAACTGTATTCTGAATCTCCTACTC  250

seq1  CAGGGTCCCTGGAGGGCAGCTGAGTGAAGAGCAAACCTCCCAGCATTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCCCTGGAGGGCAGCTGAGTGAAGAGCAAACCTCCCAGCATTTTG  300

seq1  TTAATCTTGCCAACCGACTCTCTGTGCTGTTTCTGTGAATATTTAGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTGCCAACCGACTCTCTGTGCTGTTTCTGTGAATATTTAGGCCT  350

seq1  TAGTAGAACATGGCTAGCTTGACATAATAAAGTTTTTAGAATCAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGAACATGGCTAGCTTGACATAATAAAGTTTTTAGAATCAAAAAAA  400

seq1  AAAAGGGTCGCCATCTTGGTCCGGGACCCGCCGAACTTAGGAAATTAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGTCGCCATCTTGGTCCGGGACCCGCCGAACTTAGGAAATTAGTC  450

seq1  TGAACAGGTGAGAGGGTGCGCCAGAGAACCTGACAGCTTCTGGAACAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGGTGAGAGGGTGCGCCAGAGAACCTGACAGCTTCTGGAACAGGC  500

seq1  GGAAGCACAGAGGCGCTGAGGCAGCACCCTTTGTGGGCCGGGGACAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCACAGAGGCGCTGAGGCAGCACCCTTTGTGGGCCGGGGACAGCCA  550

seq1  GCCACTGTCCGGACCGGAGGACAGGTGCCCACCCGGCTGGGGAGGCGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGTCCGGACCGGAGGACAGGTGCCCACCCGGCTGGGGAGGCGGCC  600

seq1  TAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCCCGGGACTCCAAGGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCCCGGGACTCCAAGGAAC  650

seq1  TTAGGAATTTAGTCTGCTTAGGTGAGAGTCTGTACCACCTGGGAACTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAATTTAGTCTGCTTAGGTGAGAGTCTGTACCACCTGGGAACTGCC  700

seq1  AAAGCAACACAGTGTCTGAGAAAGGTCCTGTTTTGGGCCTTCTTCTTCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACACAGTGTCTGAGAAAGGTCCTGTTTTGGGCCTTCTTCTTCGG  750

seq1  CCAGGAGGAGGTCCAAATACAAGATATCTGCGCACCTTCCCTGTAAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGGAGGTCCAAATACAAGATATCTGCGCACCTTCCCTGTAAGAGA  800

seq1  GCTTGCCAGCAGAGAGTGCTCTGAGCACTGAAACTCAGAGGAGAGAATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCAGCAGAGAGTGCTCTGAGCACTGAAACTCAGAGGAGAGAATCT  850

seq1  GTCTCCCAGGTCTGCTGATAGACGGTAACAGAATCACCAGAAGAACAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCAGGTCTGCTGATAGACGGTAACAGAATCACCAGAAGAACAATC  900

seq1  TCT  903
      |||
seq2  TCT  903