BAC Information

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BAC

Clone NameB6Ng01-276N10
Chromosome10 (Build37)
Map Location 126,697,015 - 126,850,794
singlet/doubletdoublet
Overlap geneKif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c
Downstream geneR3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276N10.bB6Ng01-276N10.g
ACCGA077517GA077518
length9161,131
definitionB6Ng01-276N10.b B6Ng01-276N10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,697,015 - 126,697,917)(126,849,661 - 126,850,794)
sequence
gaattcatttatcttttgggagacctgaggaaagaagctttggacagctg
aaaaggggggtgggggaaagattgactttgattgatttcttgctgttccc
ctcccccacatctggcacggatgcagtggtccaggctggaacaaagatga
gcccagtgaaaacgtcagaccggattctaagtgtaaaagagcaaaccaag
acaacagctcacacacactgtgtcccaccagccttcttctgtgacaagga
ctgctgactttgtcaaatcccactccttacacttcagaaagagatgaggc
ctacagagctgtctctccatcttgctgttctaccctctgcaagcagaatg
cagcccagcaacagaagggcctctgaagcctagagcaactaactaactgc
agggcttcgaggagaagggagcacatcacaggagggagcagaggagaggg
gagcacgtcacaggagggagcagaggagaggggagcacatcacaggaggg
agcagaggagaggggagcacgtcacaggagggagcagaggagaggggagc
acatcacaggagggagcagaggagaggggagcacgtcacaggagggagca
gggctgctggctctggggagttgtcctctcctactcaatcccagtgtgtc
ctccctcatctacccagacattccaaagcgggcttcttccactcctcagt
aggcaggttccctccccccccaccccccacacacacacacagagctggaa
ttataaaaataggggagaggtgagaggtagttgcccgtgactctactgga
gtcatcaaggacctcccccaaaataccgcaggtcattctttgactgagtg
aagaaacggacttccagaatgcagggcaactctaaggatgttgtccgaaa
acaaaattggccccta
gaattccatattaacagaaggccactgaactcttacaaatagtcctttgg
tatctagatcaaaaaattgctcagaccttcaaaatatatttatacttcca
aagagcacatctctaatgccttcagagaaagcacagcaacctagcttttg
taaagagaccaacctaacactctgagtgacaaatgtggtgagagacatgg
aacagttctataattccagtattcaggaaactaaagcaggagggttctga
ggctgaggcagcctggtctacagagtgagttccaggatagccagggctat
agaaagaaaccctgtctcaaaaaaataaaaaaataaaaaaaaataaaata
gtcatttgcttatatggctacatgctatatttttttcatgaccaatacat
gtctaaagtaatgaacattgtatcatttctgtaaataccatttgtgatga
tctttggtcttgcctgaagccattcaaattctcatttctcaattctggaa
agggcaagccaggatgggtaatactggctagaccaggaaagaaaggtaac
tactcgttccactacaatgatactccagaataagtagtctgattaatata
cttattcaaattagaaccttaacttttgtttcctactttgacctcactgt
ttggtttttctttttactgtactgtggacatcagtatttgactgaagaaa
cttctttactaggagggtttaactatgatcttggttctgctgactctaac
ctgggaatgaggccaagcactgtgagttcgaggagaggagaggagtatgt
agagactaacagctgctgggcagcatgaatcgtgggccactcaacaacaa
caacaacaacaacaagatgcaattctgaatcacatggtacatacacctgt
aactgcagtactgggaagactaaaggcagatcacaagttcaagctacaca
gctcaaaaaataaataaataaaattaaaaggtgaattctaaactggtttt
tagaagccaatagaaaatgttcttgggccaaggaaatgaatggtacagga
gaaaaatagaaaaccaggtgagtcactgtctgacaagtcaagaatgttgc
catctgtggagcaggcagcaggccatctcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_126697015_126697917
seq2: B6Ng01-276N10.b_50_965

seq1  GAATTCATTTATCTTTTGGGAGACCTGAGGAAAGAAGCTTTGGACAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATCTTTTGGGAGACCTGAGGAAAGAAGCTTTGGACAGCTG  50

seq1  AAAAGGGGGGTGGGGGAAAGATTGACTTTGATTGATTTCTTGCTGTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGGGGTGGGGGAAAGATTGACTTTGATTGATTTCTTGCTGTTCCC  100

seq1  CTCCCCCACATCTGGCACGGATGCAGTGGTCCAGGCTGGAACAAAGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCACATCTGGCACGGATGCAGTGGTCCAGGCTGGAACAAAGATGA  150

seq1  GCCCAGTGAAAACGTCAGACCGGATTCTAAGTGTAAAAGAGCAAACCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGAAAACGTCAGACCGGATTCTAAGTGTAAAAGAGCAAACCAAG  200

seq1  ACAACAGCTCACACACACTGTGTCCCACCAGCCTTCTTCTGTGACAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGCTCACACACACTGTGTCCCACCAGCCTTCTTCTGTGACAAGGA  250

seq1  CTGCTGACTTTGTCAAATCCCACTCCTTACACTTCAGAAAGAGATGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGACTTTGTCAAATCCCACTCCTTACACTTCAGAAAGAGATGAGGC  300

seq1  CTACAGAGCTGTCTCTCCATCTTGCTGTTCTACCCTCTGCAAGCAGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGCTGTCTCTCCATCTTGCTGTTCTACCCTCTGCAAGCAGAATG  350

seq1  CAGCCCAGCAACAGAAGGGCCTCTGAAGCCTAGAGCAACTAACTAACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGCAACAGAAGGGCCTCTGAAGCCTAGAGCAACTAACTAACTGC  400

seq1  AGGGCTTCGAGGAGAAGGGAGCACATCACAGGAGGGAGCAGAGGAGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTCGAGGAGAAGGGAGCACATCACAGGAGGGAGCAGAGGAGAGGG  450

seq1  GAGCACGTCACAGGAGGGAGCAGAGGAGAGGGGAGCACATCACAGGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACGTCACAGGAGGGAGCAGAGGAGAGGGGAGCACATCACAGGAGGG  500

seq1  AGCAGAGGAGAGGGGAGCACGTCACAGGAGGGAGCAGAGGAGAGGGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGAGAGGGGAGCACGTCACAGGAGGGAGCAGAGGAGAGGGGAGC  550

seq1  ACATCACAGGAGGGAGCAGAGGAGAGGGGAGCACGTCACAGGAGGGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACAGGAGGGAGCAGAGGAGAGGGGAGCACGTCACAGGAGGGAGCA  600

seq1  GGGCTGCTGGCTCTGGGGAGTTGTCCTCTCCTACTCAATCCCAGTGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCTGGCTCTGGGGAGTTGTCCTCTCCTACTCAATCCCAGTGTGTC  650

seq1  CTCCCTCATCTACCCAGACATTCCAAAGC-GGCTTCTTCCACTCCTCAGT  699
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTCCCTCATCTACCCAGACATTCCAAAGCGGGCTTCTTCCACTCCTCAGT  700

seq1  AGGCAGGTTCCCTCCCCCCC--ACCCCCACACACACACACAGAGCTGGA-  746
      ||||||||||||||||||||   |||||||||||||||||||||||||| 
seq2  AGGCAGGTTCCCTCCCCCCCCACCCCCCACACACACACACAGAGCTGGAA  750

seq1  --GTAGAAAACAGGGAGAGGTGAGAGGTAGTTG-CCGTGACTCTACTGGA  793
         || |||   ||||||||||||||||||||| ||||||||||||||||
seq2  TTATAAAAATAGGGGAGAGGTGAGAGGTAGTTGCCCGTGACTCTACTGGA  800

seq1  GTCTTCAAGGACCT-CCCCAAAATACCG-AGGCCATCCTTTGACTGAGTG  841
      ||| |||||||||| ||||||||||||| ||| ||| |||||||||||||
seq2  GTCATCAAGGACCTCCCCCAAAATACCGCAGGTCATTCTTTGACTGAGTG  850

seq1  AAG-AACGGACTTCCAGAATGCA-GGCAGCTCTAAGGATGTTGCCCG-AG  888
      ||| ||||||||||||||||||| |||| |||||||||||||| ||| | 
seq2  AAGAAACGGACTTCCAGAATGCAGGGCAACTCTAAGGATGTTGTCCGAAA  900

seq1  ACAAAA-TGGCCCCTA  903
      |||||| |||||||||
seq2  ACAAAATTGGCCCCTA  916

seq1: chr10_126849661_126850794
seq2: B6Ng01-276N10.g_67_1197 (reverse)

seq1  CTGAGGATGGCTCTGCTGCCTGCT-CACAGATGCCACATTTCTTTGGACC  49
      |||| |||||| |||||||||||| |||||||| ||   |||||  ||| 
seq2  CTGA-GATGGC-CTGCTGCCTGCTCCACAGATGGCAACATTCTT--GACT  46

seq1  TGTCAGACAAGTTGAACTCACCTTGTTTTCTA-TTTTCTCTTGTTCCCAT  98
      |||||||| |||   |||||||| |||||||| ||||||| || | ||||
seq2  TGTCAGAC-AGT--GACTCACCTGGTTTTCTATTTTTCTCCTG-TACCAT  92

seq1  TCATTTTCCCTTTGCCCA--GACA-TTTCTA-TGGCTTCTTAAAAACCAG  144
      ||||||  |||| |||||   ||| |||||| ||||||| ||||||||||
seq2  TCATTT--CCTTGGCCCAAGAACATTTTCTATTGGCTTC-TAAAAACCAG  139

seq1  TTTAGAA-TCAC--TTTTATTTTATTTTATTTTATTTTTTGAGCTGTGTA  191
      ||||||| ||||  ||| |||||||||   ||||||||||||||||||||
seq2  TTTAGAATTCACCTTTTAATTTTATTT--ATTTATTTTTTGAGCTGTGTA  187

seq1  GCTTGAACTTGTGATCTGCC-TTAGTCTTCCCAGTACTGCAGTTACAGGT  240
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCTTGAACTTGTGATCTGCCTTTAGTCTTCCCAGTACTGCAGTTACAGGT  237

seq1  GTATGTACCATGTGATTCAGAATTGCATCTTGTTGTTGTTGTTGTTGTTG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTACCATGTGATTCAGAATTGCATCTTGTTGTTGTTGTTGTTGTTG  287

seq1  TTGAGTGGCCCACGATTCATGCTGCCCAGCAGCTGTTAGTCTCTACATAC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGGCCCACGATTCATGCTGCCCAGCAGCTGTTAGTCTCTACATAC  337

seq1  TCCTCTCCTCTCCTCGAACTCACAGTGCTTGGCCTCATTCCCAGGTTAGA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCTCTCCTCGAACTCACAGTGCTTGGCCTCATTCCCAGGTTAGA  387

seq1  GTCAGCAGAACCAAGATCATAGTTAAACCCTCCTAGTAAAGAAGTTTCTT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAGAACCAAGATCATAGTTAAACCCTCCTAGTAAAGAAGTTTCTT  437

seq1  CAGTCAAATACTGATGTCCACAGTACAGTAAAAAGAAAAACCAAACAGTG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAATACTGATGTCCACAGTACAGTAAAAAGAAAAACCAAACAGTG  487

seq1  AGGTCAAAGTAGGAAACAAAAGTTAAGGTTCTAATTTGAATAAGTATATT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAAGTAGGAAACAAAAGTTAAGGTTCTAATTTGAATAAGTATATT  537

seq1  AATCAGACTACTTATTCTGGAGTATCATTGTAGTGGAACGAGTAGTTACC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGACTACTTATTCTGGAGTATCATTGTAGTGGAACGAGTAGTTACC  587

seq1  TTTCTTTCCTGGTCTAGCCAGTATTACCCATCCTGGCTTGCCCTTTCCAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCCTGGTCTAGCCAGTATTACCCATCCTGGCTTGCCCTTTCCAG  637

seq1  AATTGAGAAATGAGAATTTGAATGGCTTCAGGCAAGACCAAAGATCATCA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGAAATGAGAATTTGAATGGCTTCAGGCAAGACCAAAGATCATCA  687

seq1  CAAATGGTATTTACAGAAATGATACAATGTTCATTACTTTAGACATGTAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGTATTTACAGAAATGATACAATGTTCATTACTTTAGACATGTAT  737

seq1  TGGTCATGAAAAAAATATAGCATGTAGCCATATAAGCAAATGACTATTTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATGAAAAAAATATAGCATGTAGCCATATAAGCAAATGACTATTTT  787

seq1  ATTTTTTTTTATTTTTTTATTTTTTTGAGACAGGGTTTCTTTCTATAGCC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTATTTTTTTATTTTTTTGAGACAGGGTTTCTTTCTATAGCC  837

seq1  CTGGCTATCCTGGAACTCACTCTGTAGACCAGGCTGCCTCAGCCTCAGAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTATCCTGGAACTCACTCTGTAGACCAGGCTGCCTCAGCCTCAGAA  887

seq1  CCCTCCTGCTTTAGTTTCCTGAATACTGGAATTATAGAACTGTTCCATGT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTGCTTTAGTTTCCTGAATACTGGAATTATAGAACTGTTCCATGT  937

seq1  CTCTCACCACATTTGTCACTCAGAGTGTTAGGTTGGTCTCTTTACAAAAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCACATTTGTCACTCAGAGTGTTAGGTTGGTCTCTTTACAAAAG  987

seq1  CTAGGTTGCTGTGCTTTCTCTGAAGGCATTAGAGATGTGCTCTTTGGAAG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTGCTGTGCTTTCTCTGAAGGCATTAGAGATGTGCTCTTTGGAAG  1037

seq1  TATAAATATATTTTGAAGGTCTGAGCAATTTTTTGATCTAGATACCAAAG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATATTTTGAAGGTCTGAGCAATTTTTTGATCTAGATACCAAAG  1087

seq1  GACTATTTGTAAGAGTTCAGTGGCCTTCTGTTAATATGGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTTGTAAGAGTTCAGTGGCCTTCTGTTAATATGGAATTC  1131