BAC Information

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BAC

Clone NameB6Ng01-276P15
Chromosome10 (Build37)
Map Location 27,759,048 - 27,888,465
singlet/doubletdoublet
Overlap genePtprk
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276P15.bB6Ng01-276P15.g
ACCGA077617GA077618
length1,157933
definitionB6Ng01-276P15.b B6Ng01-276P15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,887,299 - 27,888,465)(27,759,048 - 27,760,417)
sequence
gaattcataagcatgcacatgaacacacagtttattcaattttatgttat
atttttactttggacttttatttaatatttgacatagttcacctctttct
ttaatccagttatattcttatcccgattttgtaactatggtttattgtag
tctggtttaatgtcactttaaagattttaaacctttattctttatttaaa
ctcaattcccatgacattttttggtatgtataattttgatatcattggga
aagataccataaaagaggatgagagcagaaagatcacagaaacaaatccc
actggccataggaagtaagaaagatggctctgtttgaaattgtctgatac
aaaacttgtccccatttcaaattggagaccccttaggctaatacttggtc
ctaatgaacatgaccctggtgaccaaccagctctcctaatcccttgtggt
ggccaaaattggaatgtctctcacagagttatgtctttggacacgcttag
accaaaggaaatggcaatattaggagttgtgaacttgttgaagcaagtat
ggctttgttggaagaagtttgtcactgtgggtgtgggcttggaggtcttc
tatgctcaagcttcactgagtgtggtatacaatctccatttgatgtctac
agatcaagatgtagaactctcagctccttctcttagcaccattgtctgcc
tgcaccctgccatgcttcctgccatgatgataatgacactgtaagccagc
cccaagggaatgcttgtctttataagagttgccttggtcaaagttgactc
ttcacaataaaaccctcagacaacacttaatgggacagaccagaacaaaa
gggtaaaattatctttgtaggcagatgacaaactggctcacaaaggagtc
taggtaaactgaggcaaaaacattattttgttcctagaaaatccatttgc
actctggcaaggttggtggatgggaataagcatctggtctcttagaacaa
tgttatgattgttgctttttctcttgggcatcagcagggacaaacaattc
tgtacaatctctaaaattggggttttatgttctttcaagacctgatacta
gtgcatcacttagatattcctggacttcacttcagctttcgtgttgtttt
gaatgaa

gaattctttagtcttttatcttaatttctttgtaaaatgaaatggttcta
cataaaatagtctgtaaaaaagctgaataactattttacaaaaagaaagt
atataatatccgtattatattaatatcccataaagattgctaagatcatt
gcttattaaataactacaaattaaaccacaattagatgccactgcacctt
gaatttttcaacatgaaagactgagcttactaggagttgatgtagacaca
gaataattgggactctcctgtgtttctgaaagaattccaataactactct
gaaaagcaaagtgtccatcttttgaaaagtcaatgtttgcctatcatatg
gcccattgaccaggctcctaagcctggcttgagaaaactgaaaacatacc
catataaaaagatttacagtaaccttattcataatacagagaactggaat
atactccagctgacccgtgaacaagagtatatataaagatgtgtgttttg
gctggagagatgagatagttcacttcagttcagtccccagaaaccacact
gggtggctcacaactttctaaaactccagcaccaggggatctggtcttct
caagcacctacatgtctagggtacttataaactcatgcagataaacacaa
atgtacaaatcaatatttttaaatgctgttttgtacatgcaatgtgatct
tctcatcattaaaaataaataaaatattatttgctaatagcctgaataga
cctcaaaataattctactagatgattaaagccatttagaaacagagaaaa
atactgttatccacatatgtgtattatgtactcatatctatatagattta
tcataatttatcaaattctgaactataagttgtagagtttttttttcttc
actaaaagagattgattgggggggtggggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_27887299_27888465
seq2: B6Ng01-276P15.b_44_1200 (reverse)

seq1  TTCATTCAAAAACAACAAGAAAAAGCTGAAAGTGAGGTTCAGGGATATCT  50
      ||||||| ||||||||| |  ||||||| |||||| || |||| ||||||
seq2  TTCATTC-AAAACAACACG--AAAGCTG-AAGTGAAGTCCAGGAATATCT  46

seq1  -AGTGATGCACTAGTATCAGTCCTTTGGAAAGAACATAAAACCCCAAATT  99
       |||||||||||||||||||  |||  |||||||||||||||||| ||||
seq2  AAGTGATGCACTAGTATCAGGTCTT--GAAAGAACATAAAACCCC-AATT  93

seq1  TTAGAGATTGTACAGAATTGTTTGTCCCTGGCTGGATGGCCCAGGAGAAA  149
      ||||||||||||||||||||||||||||| ||| ||| ||||| ||||||
seq2  TTAGAGATTGTACAGAATTGTTTGTCCCT-GCT-GAT-GCCCAAGAGAAA  140

seq1  AAGCAACAATCATAACATTGTTCTAAGAGACCAGGATGCTTATT-CCATC  198
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  AAGCAACAATCATAACATTGTTCTAAGAGACCA-GATGCTTATTCCCATC  189

seq1  CACCAACCTTGCCAGAGTGCAAATGGATTTTCTAGGAACAAAATAATGTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACCTTGCCAGAGTGCAAATGGATTTTCTAGGAACAAAATAATGTT  239

seq1  TTTGCCTCAGTTTACCTAGACTCCTTTGTGAGCCAGTTTGTCATCTGCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCAGTTTACCTAGACTCCTTTGTGAGCCAGTTTGTCATCTGCCT  289

seq1  ACAAAGATAATTTTACCCCTTTTGTTCTGGTCTGTCCCATTAAGTGTTGT  348
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACAAAGATAATTTTA-CCCTTTTGTTCTGGTCTGTCCCATTAAGTGTTGT  338

seq1  CTGAGGGTTTTATTGTGAAGAGTCAACTTTGACCAAGGCAACTCTTATAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGTTTTATTGTGAAGAGTCAACTTTGACCAAGGCAACTCTTATAA  388

seq1  AGACAAGCATTCCCTTGGGGCTGGCTTACAGTGTCATTATCATCATGGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGCATTCCCTTGGGGCTGGCTTACAGTGTCATTATCATCATGGCA  438

seq1  GGAAGCATGGCAGGGTGCAGGCAGACAATGGTGCTAAGAGAAGGAGCTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCATGGCAGGGTGCAGGCAGACAATGGTGCTAAGAGAAGGAGCTGA  488

seq1  GAGTTCTACATCTTGATCTGTAGACATCAAATGGAGATTGTATACCACAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTACATCTTGATCTGTAGACATCAAATGGAGATTGTATACCACAC  538

seq1  TCAGTGAAGCTTGAGCATAGAAGACCTCCAAGCCCACACCCACAGTGACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAAGCTTGAGCATAGAAGACCTCCAAGCCCACACCCACAGTGACA  588

seq1  AACTTCTTCCAACAAAGCCATACTTGCTTCAACAAGTTCACAACTCCTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTCCAACAAAGCCATACTTGCTTCAACAAGTTCACAACTCCTAA  638

seq1  TATTGCCATTTCCTTTGGTCTAAGCGTGTCCAAAGACATAACTCTGTGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCATTTCCTTTGGTCTAAGCGTGTCCAAAGACATAACTCTGTGAG  688

seq1  AGACATTCCAATTTTGGCCACCACAAGGGATTAGGAGAGCTGGTTGGTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTCCAATTTTGGCCACCACAAGGGATTAGGAGAGCTGGTTGGTCA  738

seq1  CCAGGGTCATGTTCATTAGGACCAAGTATTAGCCTAAGGGGTCTCCAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTCATGTTCATTAGGACCAAGTATTAGCCTAAGGGGTCTCCAATT  788

seq1  TGAAATGGGGACAAGTTTTGTATCAGACAATTTCAAACAGAGCCATCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGGGGACAAGTTTTGTATCAGACAATTTCAAACAGAGCCATCTTT  838

seq1  CTTACTTCCTATGGCCAGTGGGATTTGTTTCTGTGATCTTTCTGCTCTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCCTATGGCCAGTGGGATTTGTTTCTGTGATCTTTCTGCTCTCA  888

seq1  TCCTCTTTTATGGTATCTTTCCCAATGATATCAAAATTATACATACCAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTTATGGTATCTTTCCCAATGATATCAAAATTATACATACCAAA  938

seq1  AAATGTCATGGGAATTGAGTTTAAATAAAGAATAAAGGTTTAAAATCTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCATGGGAATTGAGTTTAAATAAAGAATAAAGGTTTAAAATCTTT  988

seq1  AAAGTGACATTAAACCAGACTACAATAAACCATAGTTACAAAATCGGGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGACATTAAACCAGACTACAATAAACCATAGTTACAAAATCGGGAT  1038

seq1  AAGAATATAACTGGATTAAAGAAAGAGGTGAACTATGTCAAATATTAAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATAACTGGATTAAAGAAAGAGGTGAACTATGTCAAATATTAAAT  1088

seq1  AAAAGTCCAAAGTAAAAATATAACATAAAATTGAATAAACTGTGTGTTCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCCAAAGTAAAAATATAACATAAAATTGAATAAACTGTGTGTTCA  1138

seq1  TGTGCATGCTTATGAATTC  1167
      |||||||||||||||||||
seq2  TGTGCATGCTTATGAATTC  1157


seq1: chr10_27759048_27760417
seq2: B6Ng01-276P15.g_67_999

seq1  GAATTCTTTAGTCTTTTATCTTAATTTCTTTGTAAAATGAAATGGTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGTCTTTTATCTTAATTTCTTTGTAAAATGAAATGGTTCTA  50

seq1  CATAAAATAGTCTGTAAAAAAGCTGAATAACTATTTTACAAAAAGAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATAGTCTGTAAAAAAGCTGAATAACTATTTTACAAAAAGAAAGT  100

seq1  ATATAATATCCGTATTATATTAATATCCCATAAAGATTGCTAAGATCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATATCCGTATTATATTAATATCCCATAAAGATTGCTAAGATCATT  150

seq1  GCTTATTAAATAACTACAAATTAAACCACAATTAGATGCCACTGCACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTAAATAACTACAAATTAAACCACAATTAGATGCCACTGCACCTT  200

seq1  GAATTTTTCAACATGAAAGACTGAGCTTACTAGGAGTTGATGTAGACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTCAACATGAAAGACTGAGCTTACTAGGAGTTGATGTAGACACA  250

seq1  GAATAATTGGGACTCTCCTGTGTTTCTGAAAGAATTCCAATAACTACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTGGGACTCTCCTGTGTTTCTGAAAGAATTCCAATAACTACTCT  300

seq1  GAAAAGCAAAGTGTCCATCTTTTGAAAAGTCAATGTTTGCCTATCATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAAAGTGTCCATCTTTTGAAAAGTCAATGTTTGCCTATCATATG  350

seq1  GCCCATTGACCAGGCTCCTAAGCCTGGCTTGAGAAAACTGAAAACATACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTGACCAGGCTCCTAAGCCTGGCTTGAGAAAACTGAAAACATACC  400

seq1  CATATAAAAAGATTTACAGTAACCTTATTCATAATACAGAGAACTGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAAAAGATTTACAGTAACCTTATTCATAATACAGAGAACTGGAAT  450

seq1  ATACTCCAGCTGACCCGTGAACAAGAGTATATATAAAGATGTGTGTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCAGCTGACCCGTGAACAAGAGTATATATAAAGATGTGTGTTTTG  500

seq1  GCTGGAGAGATGAGATAGTTCACTTCAGTTCAGTCCCCAGAAACCACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAGATGAGATAGTTCACTTCAGTTCAGTCCCCAGAAACCACACT  550

seq1  GGGTGGCTCACAACTTTCTAAAACTCCAGCACCAGGGGATCTGGTCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCTCACAACTTTCTAAAACTCCAGCACCAGGGGATCTGGTCTTCT  600

seq1  CAAGCACCTACATGTCTAGGGTACTTATAAACTCATGCAGATAAACACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACCTACATGTCTAGGGTACTTATAAACTCATGCAGATAAACACAA  650

seq1  ATGTACAAATCAATATTTTTAAATGCTGTTTTGTACATGCAATGTGATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAAATCAATATTTTTAAATGCTGTTTTGTACATGCAATGTGATCT  700

seq1  TCTCATCATTAAAAATAAATAAAATATTATTTGCTAATAGCCTGAATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCATTAAAAATAAATAAAATATTATTTGCTAATAGCCTGAATAGA  750

seq1  CCTCAAAATAATTCTACTAGATGATTAAAGCCATTTAGAAACAGAGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAATAATTCTACTAGATGATTAAAGCCATTTAGAAACAGAGAAAA  800

seq1  ATACTGTTATCCACATATGTGTATTATGTACTCATATCTATATAGATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTTATCCACATATGTGTATTATGTACTCATATCTATATAGATTTA  850

seq1  TCATAATTTATCAAATTCTGAACTATAAAGTTGTAGAG-TTTTTTTTCCT  899
      |||||||||||||||||||||||||| ||||||||||| ||||||||| |
seq2  TCATAATTTATCAAATTCTGAACTAT-AAGTTGTAGAGTTTTTTTTTCTT  899

seq1  CACTAAAAGAGATTGATTGGGGGG--TGGGAGGGTAGAGAGAGAGAAAGG  947
      ||||||||||||||||||||||||   |||||||                
seq2  CACTAAAAGAGATTGATTGGGGGGGTGGGGAGGG----------------  933

seq1  GAGTGATTGTCTCAGAGTGGGAAATGAGATAGAAAAACATAGAGATAGAG  997
                                                        
seq2  --------------------------------------------------  933

seq1  ATAGGGATAGAGATAGAGATAGAGATAGAGATAGACATAGACATAGACAT  1047
                                                        
seq2  --------------------------------------------------  933

seq1  AGACATAGGCATAGGCATAGGCATAGGCATAGGCATAGGCATAGGCATAG  1097
                                                        
seq2  --------------------------------------------------  933

seq1  GCATAGGCATAGACATAGATAGAGAATGAGAGAGAGGGAAGGACAGAGCA  1147
                                                        
seq2  --------------------------------------------------  933

seq1  AGACAACAGGAGTTGTAGAGTTTAGTGAAAGATGTTTTCATTCTTTTGAC  1197
                                                        
seq2  --------------------------------------------------  933

seq1  TTGAGTTGGAGATTTTACCAACTTACTTGCAAATTTCTTATTAAGTTCAT  1247
                                                        
seq2  --------------------------------------------------  933

seq1  AATGTGTAGAAGGAATCTCTTGTGCACCATGTAAAAGCATTCACCTGTCA  1297
                                                        
seq2  --------------------------------------------------  933

seq1  ATGAAAAGTTCTTTGGCCAATGAGCTAAGGCAAGATTAGAAGAAGGTGGG  1347
                                                        
seq2  --------------------------------------------------  933

seq1  ACATCCAGTAGGGGTGGGGAGGG  1370
                             
seq2  -----------------------  933


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