BAC Information

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BAC

Clone NameB6Ng01-277G18
Chromosome10 (Build37)
Map Location 5,642,779 - 5,788,131
singlet/doubletdoublet
Overlap geneEsr1, LOC100041310, Gm221
Upstream geneVip, Myct1, Syne1
Downstream gene1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277G18.bB6Ng01-277G18.g
ACCGA077948GA077949
length1,1481,103
definitionB6Ng01-277G18.b B6Ng01-277G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,786,982 - 5,788,131)(5,642,779 - 5,643,872)
sequence
gaattccactgacttcccagttatctttgtatccagttctcttaagaaag
tacaagggaaattatcatcatgctcttgacttcttagattaaaaccttgg
aacagaccaaagccattgaagatttaaatcaatcccgagacgagctggag
aagatgaaggagaatgcagagaaaaagctcatgttggtcatgtctgagct
ggaaaacacagagcaggaggctcgagcacaccaggaaagaagcagagcca
tgatagagttggccagccttgaactgaagaccctgaggaagtctttggat
gaagcggagaggagaggaatgcaggtagatataaatcttcaggacaggac
aggatggttgaaaagctatatgcatagtcatacttaaagctttggactgc
tttgcgaacttgtatgccatccgtgtgcaggaccatgcttagctcccgtg
tggccttctaattttgcatgtgtgcctctaaagaaagcattagtcataca
tttcttccaacacaatgtgtagcggtttctatatcatctcaacatatctg
cccactccccagcatctttttggcaagccaataatcattatgagtttctt
ggccaagaagagcagttcatgcttcatggcatagactataagaaagaaac
aaaaactaatgctcttatcaaagcattagaaagctagtgtgaatcctcgt
ctgggggtgatgagatgcttccaactgcatttgataattgtctggagatt
gcctcatcacatttaatgttaagcaggccttggagctcagagaagccgta
tctcccacagagatcagttgcaggaaaacagcctccaatctccaacagtg
gcacagacttcatggttgaccaagcacagatgtaagccataaaaaaagta
cacgctggctggctggctggctggttacaaggagaatcttatctcatgag
cacatcagtcaacataaagaactctgtcccgggcagtctgacccctactg
cttttgactagtgtgtcactttcttgaagctgaaaagggcagagacggtc
ttctggtcctaaggatttttttttcttgcctcccactcctgcttggctcc
atgtgtcaggcagagcctggcagagccagctctatgacaagcgatctc

gaattcagtgcctgaacactcctcacccctcgcacccttgccttgaatca
ccacaacagctcccacaagttacatttcatctgtgccttgaggacctcag
agaagaaagtcacccaagatctccatcttagagaaagctctcttaccagg
tggaacatttttacccacgtgttcactcactctatgaacatttttgagca
cctgctgtatagtcatcatttaacactcaacttcctcacagacccgtttt
tcctctccatttcctgtcttggcaaatggtacttcatatacatcactgca
cacatccaaagaactcagtactctgtgccctggctctcttcctcagtctt
gaactggctctatcacaagcttttatttctcgttgctcaatctcttttga
gtcctccttctgttctcacactcgctatgatttccaggccactatcatcc
cttggaggtcactacctccattcctttgcttgaattccccatcccctgca
ctgaagaacagtctgtctaccagcaaaagaacttgaactgcattccttga
ttctcagaaatcatccccccatctcccctctcccatgagccttgttttcc
tccaggcagacaacctccatcgtgtgcaaatacttactcctgactttttc
taaacatgagcattcccatatgtaggtggctttacgtggaatctttccac
cttcctttgccatctgtctcccatgtagtcttccttgagacagtacagcc
accaggaagactgccttgatttctgcttggatgcttttacaactgcccac
atctccctgatcttttgtctgtccctgctgcttttggagaacaccataga
ctgtgtaataaaataagaattaattcagttgtgattctggagggtagcac
tccatgatggacaggcttcatctgggtaggaccatgatgaaaaagcttgt
gtgtgagacagagtatcagcttaccctgctccttttttctggactggctt
ccaggagaatggccttgggtcacctcttgaaggttcttgtacttcttaag
aatagcttaacattggctaaataaattccaaataagttttgggagatggt
act
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_5786982_5788131
seq2: B6Ng01-277G18.b_51_1198 (reverse)

seq1  GAGAACGCTTGCCCTTAGAGCTTGGCTCTTCCCAGCTCTGCCTGACACAT  50
      |||| ||||||  | |||||| ||||||| ||  ||||||||||||||||
seq2  GAGATCGCTTG-TCATAGAGC-TGGCTCTGCCAGGCTCTGCCTGACACAT  48

seq1  -GAGCCAAAGCA-GAGT-GGAGGAAAGAAAAAAAAAATCCCTAGGACCAG  97
       ||||| ||||| |||| ||||| ||| |||||||||||| |||||||||
seq2  GGAGCC-AAGCAGGAGTGGGAGGCAAG-AAAAAAAAATCCTTAGGACCAG  96

seq1  -AGACCGTTCTCTGCCCTTTTCAGCTTC-AGAAAGTGACACACTAGTCAA  145
       |||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  AAGACCG-TCTCTGCCCTTTTCAGCTTCAAGAAAGTGACACACTAGTCAA  145

seq1  AAGCAGTAGGGGTCAGACTGCCCGGGACAGAGTTCTTTATGTTTGACCTG  195
      ||||||||||||||||||||||||||||||||||||||||| |||| |||
seq2  AAGCAGTAGGGGTCAGACTGCCCGGGACAGAGTTCTTTATG-TTGA-CTG  193

seq1  ATGTGCTCATGAGATAAGATTCTCCTTGTAACCAGCCAGCCAGCCAGCCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTCATGAGATAAGATTCTCCTTGTAACCAGCCAGCCAGCCAGCCA  243

seq1  GCGTGTACTTTTTTTATGGCTTACATCTGTGCTTGGTCAACCATGAAGTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTACTTTTTTTATGGCTTACATCTGTGCTTGGTCAACCATGAAGTC  293

seq1  TGTGCCACTGTTGGAGATTGGAGGCTGTTTTCCTGCAACTGATCTCTGTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCACTGTTGGAGATTGGAGGCTGTTTTCCTGCAACTGATCTCTGTG  343

seq1  GGAGATACGGCTTCTCTGAGCTCCAAGGCCTGCTTAACATTAAATGTGAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATACGGCTTCTCTGAGCTCCAAGGCCTGCTTAACATTAAATGTGAT  393

seq1  GAGGCAATCTCCAGACAATTATCAAATGCAGTTGGAAGCATCTCATCACC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAATCTCCAGACAATTATCAAATGCAGTTGGAAGCATCTCATCACC  443

seq1  CCCAGACGAGGATTCACACTAGCTTTCTAATGCTTTGATAAGAGCATTAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACGAGGATTCACACTAGCTTTCTAATGCTTTGATAAGAGCATTAG  493

seq1  TTTTTGTTTCTTTCTTATAGTCTATGCCATGAAGCATGAACTGCTCTTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTCTTTCTTATAGTCTATGCCATGAAGCATGAACTGCTCTTCT  543

seq1  TGGCCAAGAAACTCATAATGATTATTGGCTTGCCAAAAAGATGCTGGGGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAGAAACTCATAATGATTATTGGCTTGCCAAAAAGATGCTGGGGA  593

seq1  GTGGGCAGATATGTTGAGATGATATAGAAACCGCTACACATTGTGTTGGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGATATGTTGAGATGATATAGAAACCGCTACACATTGTGTTGGA  643

seq1  AGAAATGTATGACTAATGCTTTCTTTAGAGGCACACATGCAAAATTAGAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTATGACTAATGCTTTCTTTAGAGGCACACATGCAAAATTAGAA  693

seq1  GGCCACACGGGAGCTAAGCATGGTCCTGCACACGGATGGCATACAAGTTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACACGGGAGCTAAGCATGGTCCTGCACACGGATGGCATACAAGTTC  743

seq1  GCAAAGCAGTCCAAAGCTTTAAGTATGACTATGCATATAGCTTTTCAACC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCAGTCCAAAGCTTTAAGTATGACTATGCATATAGCTTTTCAACC  793

seq1  ATCCTGTCCTGTCCTGAAGATTTATATCTACCTGCATTCCTCTCCTCTCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTCCTGTCCTGAAGATTTATATCTACCTGCATTCCTCTCCTCTCC  843

seq1  GCTTCATCCAAAGACTTCCTCAGGGTCTTCAGTTCAAGGCTGGCCAACTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATCCAAAGACTTCCTCAGGGTCTTCAGTTCAAGGCTGGCCAACTC  893

seq1  TATCATGGCTCTGCTTCTTTCCTGGTGTGCTCGAGCCTCCTGCTCTGTGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGGCTCTGCTTCTTTCCTGGTGTGCTCGAGCCTCCTGCTCTGTGT  943

seq1  TTTCCAGCTCAGACATGACCAACATGAGCTTTTTCTCTGCATTCTCCTTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCTCAGACATGACCAACATGAGCTTTTTCTCTGCATTCTCCTTC  993

seq1  ATCTTCTCCAGCTCGTCTCGGGATTGATTTAAATCTTCAATGGCTTTGGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTCCAGCTCGTCTCGGGATTGATTTAAATCTTCAATGGCTTTGGT  1043

seq1  CTGTTCCAAGGTTTTAATCTAAGAAGTCAAGAGCATGATGATAATTTCCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCAAGGTTTTAATCTAAGAAGTCAAGAGCATGATGATAATTTCCC  1093

seq1  TTGTACTTTCTTAAGAGAACTGGATACAAAGATAACTGGGAAGTCAGTGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTTTCTTAAGAGAACTGGATACAAAGATAACTGGGAAGTCAGTGG  1143

seq1  AATTC  1150
      |||||
seq2  AATTC  1148


seq1: chr10_5642779_5643872
seq2: B6Ng01-277G18.g_68_1170

seq1  GAATTCAGTGCCTGAACACTCCTCACCCCTCGCACCCTTGCCTTGAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCCTGAACACTCCTCACCCCTCGCACCCTTGCCTTGAATCA  50

seq1  CCACAACAGCTCCCACAAGTTACATTTCATCTGTGCCTTGAGGACCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACAGCTCCCACAAGTTACATTTCATCTGTGCCTTGAGGACCTCAG  100

seq1  AGAAGAAAGTCACCCAAGATCTCCATCTTAGAGAAAGCTCTCTTACCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAGTCACCCAAGATCTCCATCTTAGAGAAAGCTCTCTTACCAGG  150

seq1  TGGAACATTTTTACCCACGTGTTCACTCACTCTATGAACATTTTTGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACATTTTTACCCACGTGTTCACTCACTCTATGAACATTTTTGAGCA  200

seq1  CCTGCTGTATAGTCATCATTTAACACTCAACTTCCTCACAGACCCGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGTATAGTCATCATTTAACACTCAACTTCCTCACAGACCCGTTTT  250

seq1  TCCTCTCCATTTCCTGTCTTGGCAAATGGTACTTCATATACATCACTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCATTTCCTGTCTTGGCAAATGGTACTTCATATACATCACTGCA  300

seq1  CACATCCAAAGAACTCAGTACTCTGTGCCCTGGCTCTCTTCCTCAGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCAAAGAACTCAGTACTCTGTGCCCTGGCTCTCTTCCTCAGTCTT  350

seq1  GAACTGGCTCTATCACAAGCTTTTATTTCTCGTTGCTCAATCTCTTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGCTCTATCACAAGCTTTTATTTCTCGTTGCTCAATCTCTTTTGA  400

seq1  GTCCTCCTTCTGTTCTCACACTCGCTATGATTTCCAGGCCACTATCATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCTTCTGTTCTCACACTCGCTATGATTTCCAGGCCACTATCATCC  450

seq1  CTTGGAGGTCACTACCTCCATTCCTTTGCTTGAATTCCCCATCCCCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGGTCACTACCTCCATTCCTTTGCTTGAATTCCCCATCCCCTGCA  500

seq1  CTGAAGAACAGTCTGTCTACCAGCAAAAGAACTTGAACTGCATTCCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAACAGTCTGTCTACCAGCAAAAGAACTTGAACTGCATTCCTTGA  550

seq1  TTCTCAGAAATCATCCCCCCATCTCCCCTCTCCCATGAGCCTTGTTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGAAATCATCCCCCCATCTCCCCTCTCCCATGAGCCTTGTTTTCC  600

seq1  TCCAGGCAGACAACCTCCATCGTGTGCAAATACTTACTCCTGACTTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCAGACAACCTCCATCGTGTGCAAATACTTACTCCTGACTTTTTC  650

seq1  TAAACATGAGCATTCCCATATGTAGGTGGCTTTACGTGGAATCTTTCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATGAGCATTCCCATATGTAGGTGGCTTTACGTGGAATCTTTCCAC  700

seq1  CTTCCTTTGCCATCTGTCTCCCATGTAGTCTTCCTTGAGACAGTACAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTGCCATCTGTCTCCCATGTAGTCTTCCTTGAGACAGTACAGCC  750

seq1  ACCAGGAAGACTGCCTTGATTTCTGCTTGGATGCTTTTACAACTGCCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAGACTGCCTTGATTTCTGCTTGGATGCTTTTACAACTGCCCAC  800

seq1  ATCTCCCTGATC-TTTGTCTGTCCCTGCTGCTTTTGGAGAACACCATAGA  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTGATCTTTTGTCTGTCCCTGCTGCTTTTGGAGAACACCATAGA  850

seq1  CTGTGTAATAAAATAAGAATTAATTCAGTTGTGATTCTGGAGGGTAGCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAATAAAATAAGAATTAATTCAGTTGTGATTCTGGAGGGTAGCAC  900

seq1  TCCATGATGGACAGGCTTCATCTGGGTAGGACCATGATGAAAAAGCTTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGATGGACAGGCTTCATCTGGGTAGGACCATGATGAAAAAGCTTGT  950

seq1  GTGTGAGACAGAGTATCAAGCTAACCTGCTC--TTTTTCTGGAACTGGCT  997
      ||||||||||||||||||   || |||||||  ||||||||| |||||||
seq2  GTGTGAGACAGAGTATCAGCTTACCCTGCTCCTTTTTTCTGG-ACTGGCT  999

seq1  TCCAGGAGAATGGCCTT-GGTCACCTCTTGAA-GTTC-TGTACCTCTTAA  1044
      ||||||||||||||||| |||||||||||||| |||| ||||| ||||||
seq2  TCCAGGAGAATGGCCTTGGGTCACCTCTTGAAGGTTCTTGTACTTCTTAA  1049

seq1  G-ATAGCT--ACAATGGCT-AATAAATTCCCAAATTAGTTTT-GGAGATG  1089
      | ||||||  ||| ||||| |||||||| |||||| |||||| |||||||
seq2  GAATAGCTTAACATTGGCTAAATAAATT-CCAAATAAGTTTTGGGAGATG  1098

seq1  GTACT  1094
      |||||
seq2  GTACT  1103


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