BAC Information

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BAC

Clone NameB6Ng01-277J12
Chromosome10 (Build37)
Map Location 39,366,399 - 39,524,670
singlet/doubletdoublet
Overlap geneTraf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304
Upstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337
Downstream geneLOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277J12.bB6Ng01-277J12.g
ACCGA078072GA078073
length9911,111
definitionB6Ng01-277J12.b B6Ng01-277J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,366,399 - 39,367,369)(39,523,562 - 39,524,670)
sequence
gaattcctctcagaaccatttgttctgcatgtttgtgggtgctgggcgca
gaggcagtggggaggggtagaggtgacagcaggcctgtgggggttgggcg
gcgctgatgccttttgctttcacagagggactggtcgtgtactggccagc
aggtcagggaccgcgtatggtcctgctggccagtttccagctggccttca
ccaaacgaaccatgcttcctgcttccataaacatgctttcctccttctca
ttacagaagacagtgatgataatcgtagcaatcagccccaaatacaaaca
ggatgtggaaggcgctgagtcgcagctggacgaggacgagcatggcttac
atactaagtacattcatcggatggtgagtgagggaccacagcgcctggct
cttcctctggggcaggcaccctctctaggggggttgtttcttcattcaag
gtactgggatgtttggggatgccacagttatttctatggctcaggatatt
ttgaaccttgagacctatgaagcagcatcactcctccacccagtactcaa
actggtcctgccagtaacttagaggtatcagtcaaagttctaggaagtag
agctttgtttgcttggctatttaccaacaagtgtgaagttttaggaggct
agagtggtggagtgggctgggcattgtagctgatacattctgttcctccc
ttttttcagagagggcaagtgaaaattgggaaaggacactttctgtcatg
cccaaaaaagcatgttgtcacattagcctcctaagcacagggctatgtgg
ccatgggcccaagttcttaaatccttgcccttctgcaaccctgttcacaa
aaatgggatcatcacttatacacctgtgctgtgaaagataagtgaaactg
atttcaaagtctttggcaccagaaatacacttaaccaaactagatttttg
gttctttttgtgaataggtgggggaacattcaactccctaa
gaattcacactttggcagtaatgagaaaacctgagaatattaaatgaatt
catgattattcatgatacaatgtgtatgaaataatgggatgaaaaattac
aatgataacctatggataccatataaatcggatgccatttactgtccata
tattcagaatcatattttatatgtgagaaatatttaataattagcatgtg
gatctggctaaaatatggttaagacaacacaagaattcactaaaattcat
aaatatttaaaataagctgcctacgggcattttcccctacaatcatacat
gaggtaagcatactgacaggtgggcaagtgacattccctcttcttgtcct
cagccactgctgagctggaggcactaacattcttcccacgtgagcagtga
gttccagccggcacagatgacaacctttccttctgatgaaaactacagac
tgttctcactgacactttttgacctgaaaacactgcttagttcctgcaga
gccactaaaaacaaaaagaggaagacaccatgtaaccgtccattcctccc
agaactcatagacacctggtgcagatcccaatttttctgttgcaaacttt
gtatctcatgcctgagatacgaatgaaaatgaaagatcagaaactttgtt
tgtaatagaggatgaaagtttttaaaaaagttttaagaagaacactaaga
aactttcattttctaccacctttcctaaagagaatttggtgaacattcaa
cactaagttatctggttggtggtatacatacagctcaatggaagaaaggc
tgctggaatgcctaaggtctggctctcatcttttacagttccctcaccac
cataaaacagaacaaagaagttaatttgttaaatcacagacacacacaca
aagatcttcgtatcattttctaaagaaggcagagtaagctaacctatcac
aaacatatccctttacctttcagaaaaaaataattcccaaagtaggctgg
cctccatgtccattaactaaacccaaatccatgtttcatggaattaagtg
ctagaggagaagagtcaggagtacactttcttctttaacacctacatgtt
ggagacttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_39366399_39367369
seq2: B6Ng01-277J12.b_44_1034

seq1  GAATTCCTCTCAGAACCATTTGTTCTGCATGTTTGTGGGTGCTGGGCGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCAGAACCATTTGTTCTGCATGTTTGTGGGTGCTGGGCGCA  50

seq1  GAGGCAGTGGGGAGGGGTAGAGGTGACAGCAGGCCTGTGGGGGTTGGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGTGGGGAGGGGTAGAGGTGACAGCAGGCCTGTGGGGGTTGGGCG  100

seq1  GCGCTGATGCCTTTTGCTTTCACAGAGGGACTGGTCGTGTACTGGCCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGATGCCTTTTGCTTTCACAGAGGGACTGGTCGTGTACTGGCCAGC  150

seq1  AGGTCAGGGACCGCGTATGGTCCTGCTGGCCAGTTTCCAGCTGGCCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGGACCGCGTATGGTCCTGCTGGCCAGTTTCCAGCTGGCCTTCA  200

seq1  CCAAACGAACCATGCTTCCTGCTTCCATAAACATGCTTTCCTCCTTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACGAACCATGCTTCCTGCTTCCATAAACATGCTTTCCTCCTTCTCA  250

seq1  TTACAGAAGACAGTGATGATAATCGTAGCAATCAGCCCCAAATACAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAGACAGTGATGATAATCGTAGCAATCAGCCCCAAATACAAACA  300

seq1  GGATGTGGAAGGCGCTGAGTCGCAGCTGGACGAGGACGAGCATGGCTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGGAAGGCGCTGAGTCGCAGCTGGACGAGGACGAGCATGGCTTAC  350

seq1  ATACTAAGTACATTCATCGGATGGTGAGTGAGGGACCACAGCGCCTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAGTACATTCATCGGATGGTGAGTGAGGGACCACAGCGCCTGGCT  400

seq1  CTTCCTCTGGGGCAGGCACCCTCTCTAGGGGGGTTGTTTCTTCATTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTGGGGCAGGCACCCTCTCTAGGGGGGTTGTTTCTTCATTCAAG  450

seq1  GTACTGGGATGTTTGGGGATGCCACAGTTATTTCTATGGCTCAGGATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGGATGTTTGGGGATGCCACAGTTATTTCTATGGCTCAGGATATT  500

seq1  TTGAACCTTGAGACCTATGAAGCAGCATCACTCCTCCACCCAGTACTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCTTGAGACCTATGAAGCAGCATCACTCCTCCACCCAGTACTCAA  550

seq1  ACTGGTCCTGCCAGTAACTTAGAGGTATCAGTCAAAGTTCTAGGAAGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCCTGCCAGTAACTTAGAGGTATCAGTCAAAGTTCTAGGAAGTAG  600

seq1  AGCTTTGTTTGCTTGGCTATTTACCAACAAGTGTGAAGTTTTAGGAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTTTGCTTGGCTATTTACCAACAAGTGTGAAGTTTTAGGAGGCT  650

seq1  AGAGTGGTGGAGTGGGCTGGGCATTGTAGCTGTTACATTCTGTTCCTCCC  700
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGAGTGGTGGAGTGGGCTGGGCATTGTAGCTGATACATTCTGTTCCTCCC  700

seq1  -TTTTTCAGAGA-GGCAAGTGAAAATTGGG-AAGGACAC-TTCTGTCATG  746
       ||||||||||| ||||||||||||||||| |||||||| ||||||||||
seq2  TTTTTTCAGAGAGGGCAAGTGAAAATTGGGAAAGGACACTTTCTGTCATG  750

seq1  -CCAAAAAAGCATG-TGTCACATTAGCCTCCTAAGCACA-GGCTATGTGG  793
       ||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  CCCAAAAAAGCATGTTGTCACATTAGCCTCCTAAGCACAGGGCTATGTGG  800

seq1  CCAT-GGCCCAAGTTCTTAAATCC-TGCCCTTCTGCAACCCTGTTCACAA  841
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCATGGGCCCAAGTTCTTAAATCCTTGCCCTTCTGCAACCCTGTTCACAA  850

seq1  AA--TGGATCATCAC-TATACA-CGGTGCTGTG-AAGATAAGTG-AAGTG  885
      ||   |||||||||| |||||| | |||||||| |||||||||| || ||
seq2  AAATGGGATCATCACTTATACACCTGTGCTGTGAAAGATAAGTGAAACTG  900

seq1  ATATTCAAAGCATTTGGCACAAGAAA-ACACTTAACCAAA-GAGATATTT  933
      || |||||||  |||||||| ||||| |||||||||||||  |||| |||
seq2  AT-TTCAAAGTCTTTGGCACCAGAAATACACTTAACCAAACTAGATTTTT  949

seq1  -GTTC-TTTTGTG-ATAGGT-GGGGAACATTCTACTCCCTAA  971
       |||| ||||||| |||||| ||||||||||| |||||||||
seq2  GGTTCTTTTTGTGAATAGGTGGGGGAACATTCAACTCCCTAA  991

seq1: chr10_39523562_39524670
seq2: B6Ng01-277J12.g_64_1174 (reverse)

seq1  TTCAAGTCTCAAAACATGTTAGTGT--AAGAAGAAAGTTGTTAACTCTGA  48
      ||||||||||  |||||||  ||||  |||||||||| |||  ||||   
seq2  TTCAAGTCTC-CAACATGTAGGTGTTAAAGAAGAAAG-TGT--ACTCCTG  46

seq1  ACTCTTCT-CTCTAGCACTTAATT-CATGAAACATGGATTTGGG-TTAGT  95
      |||||||| ||||||||||||||| ||||||||||||||||||| |||||
seq2  ACTCTTCTCCTCTAGCACTTAATTCCATGAAACATGGATTTGGGTTTAGT  96

seq1  TAATGGACATGGAGGCCAGCCTACTTTGGGAATTA-TTTTTTCTGAAAGG  144
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAATGGACATGGAGGCCAGCCTACTTTGGGAATTATTTTTTTCTGAAAGG  146

seq1  TAAAGGGATATGTTTGTGATAGGTTAGCTTACTCTGCCCTTCTTTAG-AA  193
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  TAAAGGGATATGTTTGTGATAGGTTAGCTTACTCTG-CCTTCTTTAGAAA  195

seq1  ATGATACGAAGATCTTTGTGTGTGTGTCTGTGATTTAACAAATTAACTTC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACGAAGATCTTTGTGTGTGTGTCTGTGATTTAACAAATTAACTTC  245

seq1  TTTGTTCTGTTTTATGGTGGTGAGGGAACTGTAAAAGATGAGAGCCAGAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTGTTTTATGGTGGTGAGGGAACTGTAAAAGATGAGAGCCAGAC  295

seq1  CTTAGGCATTCCAGCAGCCTTTCTTCCATTGAGCTGTATGTATACCACCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCATTCCAGCAGCCTTTCTTCCATTGAGCTGTATGTATACCACCA  345

seq1  ACCAGATAACTTAGTGTTGAATGTTCACCAAATTCTCTTTAGGAAAGGTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATAACTTAGTGTTGAATGTTCACCAAATTCTCTTTAGGAAAGGTG  395

seq1  GTAGAAAATGAAAGTTTCTTAGTGTTCTTCTTAAAACTTTTTTAAAAACT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAATGAAAGTTTCTTAGTGTTCTTCTTAAAACTTTTTTAAAAACT  445

seq1  TTCATCCTCTATTACAAACAAAGTTTCTGATCTTTCATTTTCATTCGTAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTCTATTACAAACAAAGTTTCTGATCTTTCATTTTCATTCGTAT  495

seq1  CTCAGGCATGAGATACAAAGTTTGCAACAGAAAAATTGGGATCTGCACCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCATGAGATACAAAGTTTGCAACAGAAAAATTGGGATCTGCACCA  545

seq1  GGTGTCTATGAGTTCTGGGAGGAATGGACGGTTACATGGTGTCTTCCTCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTATGAGTTCTGGGAGGAATGGACGGTTACATGGTGTCTTCCTCT  595

seq1  TTTTGTTTTTAGTGGCTCTGCAGGAACTAAGCAGTGTTTTCAGGTCAAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTAGTGGCTCTGCAGGAACTAAGCAGTGTTTTCAGGTCAAAA  645

seq1  AGTGTCAGTGAGAACAGTCTGTAGTTTTCATCAGAAGGAAAGGTTGTCAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAGTGAGAACAGTCTGTAGTTTTCATCAGAAGGAAAGGTTGTCAT  695

seq1  CTGTGCCGGCTGGAACTCACTGCTCACGTGGGAAGAATGTTAGTGCCTCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCGGCTGGAACTCACTGCTCACGTGGGAAGAATGTTAGTGCCTCC  745

seq1  AGCTCAGCAGTGGCTGAGGACAAGAAGAGGGAATGTCACTTGCCCACCTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCAGTGGCTGAGGACAAGAAGAGGGAATGTCACTTGCCCACCTG  795

seq1  TCAGTATGCTTACCTCATGTATGATTGTAGGGGAAAATGCCCGTAGGCAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATGCTTACCTCATGTATGATTGTAGGGGAAAATGCCCGTAGGCAG  845

seq1  CTTATTTTAAATATTTATGAATTTTAGTGAATTCTTGTGTTGTCTTAACC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTAAATATTTATGAATTTTAGTGAATTCTTGTGTTGTCTTAACC  895

seq1  ATATTTTAGCCAGATCCACATGCTAATTATTAAATATTTCTCACATATAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAGCCAGATCCACATGCTAATTATTAAATATTTCTCACATATAA  945

seq1  AATATGATTCTGAATATATGGACAGTAAATGGCATCCGATTTATATGGTA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATTCTGAATATATGGACAGTAAATGGCATCCGATTTATATGGTA  995

seq1  TCCATAGGTTATCATTGTAATTTTTCATCCCATTATTTCATACACATTGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGGTTATCATTGTAATTTTTCATCCCATTATTTCATACACATTGT  1045

seq1  ATCATGAATAATCATGAATTCATTTAATATTCTCAGGTTTTCTCATTACT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAATAATCATGAATTCATTTAATATTCTCAGGTTTTCTCATTACT  1095

seq1  GCCAAAGTGTGAATTC  1109
      ||||||||||||||||
seq2  GCCAAAGTGTGAATTC  1111