BAC Information

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BAC

Clone NameB6Ng01-277J16
Chromosome10 (Build37)
Map Location 112,340,317 - 112,477,649
singlet/doubletdoublet
Overlap gene4921506J03Rik
Upstream geneKrr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2, LOC100042639
Downstream geneLOC100042655, LOC100042666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277J16.bB6Ng01-277J16.g
ACCGA078080GA078081
length1,101282
definitionB6Ng01-277J16.b B6Ng01-277J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,340,317 - 112,341,428)(112,477,368 - 112,477,649)
sequence
gaattcacacaatggaaaaaaaaacacgttgagatgtgagaacaaagaca
gtttatttattaagaaactaacaactagcctatggatcactaaagctatc
attttaaatggcgctcactctcccccagtgattttgttcttggcttttaa
ttatgtggttttgcaagaggtcaaccaattactgagcatttcagacagag
aatgagcaaactgccttgagaattacttagtgaaatgtgcctttgatctg
aaaagaactcaacggcaatcacaaagaaggatcaaatgaatttatttgac
tatttcaaagtaactttggaggactgtgttaaaccctgagactaaaaatt
agaagacacacacacacacaaaatctgaatagttctatcacaaaaatatc
ttgtcagaattgacaaatggtctcaaactcaagtttctttcaactttgaa
aggaaatcatattttcccccatagcttatcttgtcatatttatagttaat
taacgttgtcaataggacaggattttgaagacattcatgagcactattct
tgtgcactccagacttgtcaaagctcaggagcagttgcaggaaatcatct
aaagcttgctaatattttcagcagagcattgtagaggagggctcatgaat
gactctcaatttggtatgttactgatattaacatttaatatttagcaatt
tagtattagtaatttatattatgattatagttaatgatagtaattaatat
tagcaatttaataatcaaattttaaatcttcatattacatatgttaactc
tcaatggtgttatctgatattgatattaagctttcatcttactcagctaa
taatgcgtaaattatatttttttttttatttaggaaaaatttttttcaac
aagttttacatttttgtttctgtatgggaaaacaatgaagttacatatta
agtcattgatttcatggtggagataatctaacatctatggaggaaaataa
aaggcacacaaattgacatttattataatagcagagcttgagactagatg
cccctcacgagatgtatacggaaattggtacattacccatgggagtacta
c

tccttgaattaaacatttatttttaaagtaaaccttaattaaaataacaa
aaacattacagaggaaggatcttaagagtttggggatcacccttaacaaa
agatccagagattggatttcatcgttgatgacactgcagcaaatagatgt
ttcaggacagatgtgatagaagtatgaaagaagtatgtgatagagatgat
agatggatgataagtgatgatatatgatatatgatatagatagatagata
gatacatagatagatagatagagagagagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_112340317_112341428
seq2: B6Ng01-277J16.b_47_1147

seq1  GAATTCACACAATGGAAAAAAAAACACGTTGAGATGTGAGAACAAAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAATGGAAAAAAAAACACGTTGAGATGTGAGAACAAAGACA  50

seq1  GTTTATTTATTAAGAAACTAACAACTAGCCTATGGATCACTAAAGCTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTATTAAGAAACTAACAACTAGCCTATGGATCACTAAAGCTATC  100

seq1  ATTTTAAATGGCGCTCACTCTCCCCCAGTGATTTTGTTCTTGGCTTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATGGCGCTCACTCTCCCCCAGTGATTTTGTTCTTGGCTTTTAA  150

seq1  TTATGTGGTTTTGCAAGAGGTCAACCAATTACTGAGCATTTCAGACAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGGTTTTGCAAGAGGTCAACCAATTACTGAGCATTTCAGACAGAG  200

seq1  AATGAGCAAACTGCCTTGAGAATTACTTAGTGAAATGTGCCTTTGATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCAAACTGCCTTGAGAATTACTTAGTGAAATGTGCCTTTGATCTG  250

seq1  AAAAGAACTCAACGGCAATCACAAAGAAGGATCAAATGAATTTATTTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACTCAACGGCAATCACAAAGAAGGATCAAATGAATTTATTTGAC  300

seq1  TATTTCAAAGTAACTTTGGAGGACTGTGTTAAACCCTGAGACTAAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAAAGTAACTTTGGAGGACTGTGTTAAACCCTGAGACTAAAAATT  350

seq1  AGAAGACACACACACACACAAAATCTGAATAGTTCTATCACAAAAATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACACACACACACACAAAATCTGAATAGTTCTATCACAAAAATATC  400

seq1  TTGTCAGAATTGACAAATGGTCTCAAACTCAAGTTTCTTTCAACTTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGAATTGACAAATGGTCTCAAACTCAAGTTTCTTTCAACTTTGAA  450

seq1  AGGAAATCATATTTTCCCCCATAGCTTATCTTGTCATATTTATAGTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATCATATTTTCCCCCATAGCTTATCTTGTCATATTTATAGTTAAT  500

seq1  TAACGTTGTCAATAGGACAGGATTTTGAAGACATTCATGAGCACTATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTTGTCAATAGGACAGGATTTTGAAGACATTCATGAGCACTATTCT  550

seq1  TGTGCACTCCAGACTTGTCAAAGCTCAGGAGCAGTTGCAGGAAATCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACTCCAGACTTGTCAAAGCTCAGGAGCAGTTGCAGGAAATCATCT  600

seq1  AAAGCTTGCTAATATTTTCAGCAGAGCATTGTAGAGGAGGGCTCATGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGCTAATATTTTCAGCAGAGCATTGTAGAGGAGGGCTCATGAAT  650

seq1  GACTCTCAATTTGGTATGTTACTGATATTAACATTTAATATTTAGCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCAATTTGGTATGTTACTGATATTAACATTTAATATTTAGCAATT  700

seq1  TAGTATTAGTAATTTATATTATGATTATAGTTAATGATAGTAATTAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTAGTAATTTATATTATGATTATAGTTAATGATAGTAATTAATAT  750

seq1  TAGCAATTTAATAATCAAATTTTAAATCTTCATATTACATATGTTAACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATTTAATAATCAAATTTTAAATCTTCATATTACATATGTTAACTC  800

seq1  TCAATGGTGTTATCTGATATTGATATTAAGCTTTCATCTTACTCAGCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGTGTTATCTGATATTGATATTAAGCTTTCATCTTACTCAGCTAA  850

seq1  TAATGCGTAAATTATA--TTTTTTTTTATTTAGGAAAAATTTTTTTCAAC  898
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  TAATGCGTAAATTATATTTTTTTTTTTATTTAGGAAAAATTTTTTTCAAC  900

seq1  AAGTTTTACATTTTTGTTTCTGTATGGGAAAACAATGAAGTTACATATTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTACATTTTTGTTTCTGTATGGGAAAACAATGAAGTTACATATTA  950

seq1  AGTCATTGATTTCATGGT-GAGATTATCTAACCATCTAT-GAGGAAAATA  996
      |||||||||||||||||| ||||| |||||| ||||||| ||||||||||
seq2  AGTCATTGATTTCATGGTGGAGATAATCTAA-CATCTATGGAGGAAAATA  999

seq1  AAAGGCACAACAAATGGACATTTATTATAATAGCCAGAAGCTGGAAAGAA  1046
      |||||||| |||||| ||||||||||||||||| ||| |||| || |   
seq2  AAAGGCAC-ACAAATTGACATTTATTATAATAG-CAG-AGCTTGAGA---  1043

seq1  CCCAGATGCCCCTCAACAGAGGAATGTATACAGAAAATGTGGTACATTTA  1096
       | ||||||||||||  ||    |||||||| ||||   ||||||| |||
seq2  -CTAGATGCCCCTCACGAG----ATGTATACGGAAA--TTGGTACA-TTA  1085

seq1  CACAATGGAGTACTAC  1112
      | ||  ||||||||||
seq2  CCCATGGGAGTACTAC  1101


seq1: chr10_112477368_112477649
seq2: B6Ng01-277J16.g_73_354 (reverse)

seq1  TATCTCTCTCTCTATCTATCTATCTATCTATCTATCTATCTATCTATATC  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATCTCTCTCTCTATCTATCTATCTATGTATCTATCTATCTATCTATATC  50

seq1  ATATATCATATATCATCACTTATCATCCATCTATCATCTCTATCACATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCATATATCATCACTTATCATCCATCTATCATCTCTATCACATAC  100

seq1  TTCTTTCATACTTCTATCACATCTGTCCTGAAACATCTATTTGCTGCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCATACTTCTATCACATCTGTCCTGAAACATCTATTTGCTGCAGT  150

seq1  GTCATCAACGATGAAATCCAATCTCTGGATCTTTTGTTAAGGGTGATCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAACGATGAAATCCAATCTCTGGATCTTTTGTTAAGGGTGATCCC  200

seq1  CAAACTCTTAAGATCCTTCCTCTGTAATGTTTTTGTTATTTTAATTAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTTAAGATCCTTCCTCTGTAATGTTTTTGTTATTTTAATTAAGG  250

seq1  TTTACTTTAAAAATAAATGTTTAATTCAAGGA  282
      ||||||||||||||||||||||||||||||||
seq2  TTTACTTTAAAAATAAATGTTTAATTCAAGGA  282


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