BAC Information

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BAC

Clone NameB6Ng01-278B12
Chromosome10 (Build37)
Map Location 85,802,847 - 85,878,512
singlet/doubletdoublet
Overlap geneSyn3, Timp3
Upstream geneBtbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7
Downstream geneEG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2, 1700113H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278B12.bB6Ng01-278B12.g
ACCGA078429GA078430
length1,1671,164
definitionB6Ng01-278B12.b B6Ng01-278B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,802,847 - 85,803,999)(85,877,357 - 85,878,512)
sequence
gaattcctaaactggcttgctttccttcctgccttcagggcttgggagcc
cagttaccagagaccttgctgtcagcagaatgcccctggttgttgtcaca
cccactagtgggagttgtttggaggctacataactttcacccaccagcct
gccagcagccactcccaggctagcctgctcagactctctgttcactgttc
ttcagctgggttcatggtatcagggtgatagggtgttctatatagtcatc
tctcacttatttctgattaggttcaatgggaaatggtacagtcagagtca
tgcattttaattaagggcagatgagaatctcaagttgaggcattagggca
ccttccctaagcatatgtggcttttgatgtgcagcctgccaaaggcgtaa
caggagtttcttggaggcgggaagcttgtacaagctggtgaggtggacac
gactccccaaatcgccctgctatttggctttcctcattagccatagctaa
tgtctttcattcattttggttcccttcccagccctgtgttatgacgcaca
aaacctgccaatgcctttttatctagagggaccatctgcttgcatgccag
agcaggtacagataggaatttgagtctgcccattcatcccagtcctcttc
agcccctctgtgcttagcactgattgggctgtaagatgggaagaaaagga
cacgctcgtcacaattattagatgactttagtaagcaacgtttattgagc
atattctatgccccacagtgatctgctaagtctttgtataaattagccct
catgccacgtttgtcaaacagcctcatatttatcttcttagtggtgagcc
acaacactttgagagttatgtaacaggcaagagttaggacttagaaactg
gaaaactatagggtttttactaccctggttcttggaggaccaaggagatt
aacaaagtttggagcctgcaaggcaagactactcatttctgcccactgtg
gggggcttccccttcacctgcttacgttgagttccctcaagggggactta
aggccaagatgggttttgctggtatgtgatctggacaggtgttgccaacc
tgccaaagggtgttatcagaagttaattccaactgctgagcttgcacttt
tcctaggaggctctgtt
gaattctctcaacatcctaaaggcagcgtcttccctgagtctcccaatca
gagcccagctggcctgcatcttgactttggctctgtgcaacacagaacgg
agactagccaagataacctagatttctgacctacagagcaatgagatgag
tttgtgttgtctaaactccctagaccgacagtaatctgttccagctgcag
cagattaatacagtataggatggcacacacacacacctcttccccaggag
tcccaaggccttaggaactgaaccccatttctatgttctaactctgtctt
ctgctgcatttacccatgggcccagtgtctatagaacagatgacatttca
tcattccattgccacattgccccatgtcttcacttaggtttttctttatt
ggcagttcttgagctttccccatactatctttcagaaatactttccttat
cactgtgatccataacctctggcaatgtggttcctaaaagcaagttactt
agcagatgtgggacccattggctgtaggcagggttctttacaggagctga
gccaatagagtgtatatctattgtaggagggcatttattagactggctta
catagcaggcctaggagcccaacaatggccttctgcatactggaggggct
gacagctacccagcctgcaaagatgattgcctcagcatcaccagtacagc
accagaggcctagaagctcactgaagaattgctgatattgagtttgactg
aaaggatgaagaaacgagaatcaggaccacaaaggatggtagcagcagca
atagatgtacttgctcaggaagaggaggcaggattgggacactgctttct
ccacagatctcttagaacatggactgcccattgaaacagaactcactttg
aaagctggctatcctattggtttaatcttctctgggaatgccccaggaac
atatgcagagctgttgttcacccaggtgattccaagtccttcttgagtgg
aatcatcaagaccaagccacagccctttcacatcaaattattgaggagta
taagtttatttaagagtgctttgatggctaactggttgccaatctgaatt
cataagcagtgagcaatcttcaatgaaaccatggttttttgctgggtgta
cctttccctcatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_85802847_85803999
seq2: B6Ng01-278B12.b_45_1211

seq1  GAATTCCTAAACTGGCTTGCTTTCCTTCCTGCCTTCAGGGCTTGGGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAACTGGCTTGCTTTCCTTCCTGCCTTCAGGGCTTGGGAGCC  50

seq1  CAGTTACCAGAGACCTTGCTGTCAGCAGAATGCCCCTGGTTGTTGTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACCAGAGACCTTGCTGTCAGCAGAATGCCCCTGGTTGTTGTCACA  100

seq1  CCCACTAGTGGGAGTTGTTTGGAGGCTACATAACTTTCACCCACCAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTAGTGGGAGTTGTTTGGAGGCTACATAACTTTCACCCACCAGCCT  150

seq1  GCCAGCAGCCACTCCCAGGCTAGCCTGCTCAGACTCTCTGTTCACTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAGCCACTCCCAGGCTAGCCTGCTCAGACTCTCTGTTCACTGTTC  200

seq1  TTCAGCTGGGTTCATGGTATCAGGGTGATAGGGTGTTCTATATAGTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGGGTTCATGGTATCAGGGTGATAGGGTGTTCTATATAGTCATC  250

seq1  TCTCACTTATTTCTGATTAGGTTCAATGGGAAATGGTACAGTCAGAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTATTTCTGATTAGGTTCAATGGGAAATGGTACAGTCAGAGTCA  300

seq1  TGCATTTTAATTAAGGGCAGATGAGAATCTCAAGTTGAGGCATTAGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTAATTAAGGGCAGATGAGAATCTCAAGTTGAGGCATTAGGGCA  350

seq1  CCTTCCCTAAGCATATGTGGCTTTTGATGTGCAGCCTGCCAAAGGCGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTAAGCATATGTGGCTTTTGATGTGCAGCCTGCCAAAGGCGTAA  400

seq1  CAGGAGTTTCTTGGAGGCGGGAAGCTTGTACAAGCTGGTGAGGTGGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTTCTTGGAGGCGGGAAGCTTGTACAAGCTGGTGAGGTGGACAC  450

seq1  GACTCCCCAAATCGCCCTGCTATTTGGCTTTCCTCATTAGCCATAGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCCAAATCGCCCTGCTATTTGGCTTTCCTCATTAGCCATAGCTAA  500

seq1  TGTCTTTCATTCATTTTGGTTCCCTTCCCAGCCCTGTGTTATGACGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCATTCATTTTGGTTCCCTTCCCAGCCCTGTGTTATGACGCACA  550

seq1  AAACCTGCCAATGCCTTTTTATCTAGAGGGACCATCTGCTTGCATGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGCCAATGCCTTTTTATCTAGAGGGACCATCTGCTTGCATGCCAG  600

seq1  AGCAGGTACAGATAGGAATTTGAGTCTGCCCATTCATCCCAGTCCTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTACAGATAGGAATTTGAGTCTGCCCATTCATCCCAGTCCTCTTC  650

seq1  AGCCCCTCTGTGCTTAGCACTGATTGGGCTGTAAGATGGGAAGAAAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTCTGTGCTTAGCACTGATTGGGCTGTAAGATGGGAAGAAAAGGA  700

seq1  CACGCTCGTCACAATTATTAGATGACTTTAGTAAGCAACGTTTATTGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTCGTCACAATTATTAGATGACTTTAGTAAGCAACGTTTATTGAGC  750

seq1  ATATTCTATGCCCCACAGTGATCTGCTAAGTCTTTGTATAAATTAG-CCT  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATATTCTATGCCCCACAGTGATCTGCTAAGTCTTTGTATAAATTAGCCCT  800

seq1  CATGCCACGTTTGTCAAACAGCCTCATATTTATCTTCTTAGTGGTGAGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATGCCACGTTTGTCAAACAGCCTCATATTTATCTTCTTAGTGGTGA-GC  849

seq1  CACAAACAC-TTGAGAGTTATGTAACAGGCAAGAGTTTAGGAC-TAGAAA  897
      ||| ||||| ||||||||||||||||||||||||| ||||||| ||||||
seq2  CAC-AACACTTTGAGAGTTATGTAACAGGCAAGAG-TTAGGACTTAGAAA  897

seq1  CTGGAAAACTATAGGGTTTTTACTA-CCTGG-TCTTGGAGGA-CAAGGAG  944
      ||||||||||||||||||||||||| ||||| |||||||||| |||||||
seq2  CTGGAAAACTATAGGGTTTTTACTACCCTGGTTCTTGGAGGACCAAGGAG  947

seq1  ATTAACAAAGTATGGAGCCTGC-AGGC-AGACTACTCATTTCTGCCCACT  992
      ||||||||||| |||||||||| |||| ||||||||||||||||||||||
seq2  ATTAACAAAGTTTGGAGCCTGCAAGGCAAGACTACTCATTTCTGCCCACT  997

seq1  GT-GGGGGCT--CCCCTCACCTGCTTACGTTGAGTTCCCTC-AGGGGGAC  1038
      || |||||||  ||| ||||||||||||||||||||||||| ||||||||
seq2  GTGGGGGGCTTCCCCTTCACCTGCTTACGTTGAGTTCCCTCAAGGGGGAC  1047

seq1  TTAAAGGCCAGGATGGG-TTTGCTGGTATGTGATCT-GACAGGTGT--GC  1084
      || ||||||| |||||| |||||||||||||||||| |||||||||   |
seq2  TT-AAGGCCAAGATGGGTTTTGCTGGTATGTGATCTGGACAGGTGTTGCC  1096

seq1  AACCTG-CAAAGGGTG-TATCAGAAGTATATT-CAACTGCTGAGGCTGGC  1131
      |||||| ||||||||| ||||||||||  ||| |||||||||| ||| ||
seq2  AACCTGCCAAAGGGTGTTATCAGAAGTTAATTCCAACTGCTGA-GCTTGC  1145

seq1  ACTGGTCCCTAGGAGG-TCTGTT  1153
      |||  | ||||||||| ||||||
seq2  ACT-TTTCCTAGGAGGCTCTGTT  1167

seq1: chr10_85877357_85878512
seq2: B6Ng01-278B12.g_65_1228 (reverse)

seq1  TGATGA--GAAAGGTACACCAAGCAAAAA--CAT-GTTTCATGGAGAATT  45
      ||||||  |||||||||||| ||||||||  ||| ||||||| ||  |||
seq2  TGATGAGGGAAAGGTACACCCAGCAAAAAACCATGGTTTCATTGAAGATT  50

seq1  GCTCACTGCTTTATGA--TCAGATTTGGCACACAGTAGGCATTCAAAACC  93
      ||||||||| ||||||  ||||| ||||||  ||||  ||  || ||| |
seq2  GCTCACTGC-TTATGAATTCAGA-TTGGCAACCAGTTAGCCATC-AAAGC  97

seq1  ACTTCTTTAATAAACTATTACT-CTC-ATAATTTGAATGTGAAAGGGGCT  141
      || |||| ||||||||  |||| ||| |||||||| |||||||| |||||
seq2  AC-TCTTAAATAAACTTATACTCCTCAATAATTTG-ATGTGAAA-GGGCT  144

seq1  GT-GCTTGGTCTTGATGA-TCCACTC-AGAAGGACTTGGAAATCACCTGG  188
      || ||||||||||||||| ||||||| |||||||||||| ||||||||||
seq2  GTGGCTTGGTCTTGATGATTCCACTCAAGAAGGACTTGG-AATCACCTGG  193

seq1  GTGA--CACAGCTCTGCATATGTTCCTGGGGGCATTCCCAGAGAAGATTA  236
      ||||   |||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGAACAACAGCTCTGCATATGTTCCT-GGGGCATTCCCAGAGAAGATTA  242

seq1  AA-CAATAGGATAGCCAGCTTTCAAAGTGAG-TCTGTTTCAATGGGCAGT  284
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACCAATAGGATAGCCAGCTTTCAAAGTGAGTTCTGTTTCAATGGGCAGT  292

seq1  CCATGTTCTAAGAGATCTGTGGAGAAAGCAGTGTCCCAATCCTGCCTCCT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCTAAGAGATCTGTGGAGAAAGCAGTGTCCCAATCCTGCCTCCT  342

seq1  CTTCCTGAGCAAGTACATCTATTGCTGCTGCTACCATCCTTTGTGGTCCT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAGCAAGTACATCTATTGCTGCTGCTACCATCCTTTGTGGTCCT  392

seq1  GATTCTCGTTTCTTCATCCTTTCAGTCAAACTCAATATCAGCAATTCTTC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCGTTTCTTCATCCTTTCAGTCAAACTCAATATCAGCAATTCTTC  442

seq1  AGTGAGCTTCTAGGCCTCTGGTGCTGTACTGGTGATGCTGAGGCAATCAT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCTTCTAGGCCTCTGGTGCTGTACTGGTGATGCTGAGGCAATCAT  492

seq1  CTTTGCAGGCTGGGTAGCTGTCAGCCCCTCCAGTATGCAGAAGGCCATTG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAGGCTGGGTAGCTGTCAGCCCCTCCAGTATGCAGAAGGCCATTG  542

seq1  TTGGGCTCCTAGGCCTGCTATGTAAGCCAGTCTAATAAATGCCCTCCTAC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTCCTAGGCCTGCTATGTAAGCCAGTCTAATAAATGCCCTCCTAC  592

seq1  AATAGATATACACTCTATTGGCTCAGCTCCTGTAAAGAACCCTGCCTACA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATATACACTCTATTGGCTCAGCTCCTGTAAAGAACCCTGCCTACA  642

seq1  GCCAATGGGTCCCACATCTGCTAAGTAACTTGCTTTTAGGAACCACATTG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGGGTCCCACATCTGCTAAGTAACTTGCTTTTAGGAACCACATTG  692

seq1  CCAGAGGTTATGGATCACAGTGATAAGGAAAGTATTTCTGAAAGATAGTA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGTTATGGATCACAGTGATAAGGAAAGTATTTCTGAAAGATAGTA  742

seq1  TGGGGAAAGCTCAAGAACTGCCAATAAAGAAAAACCTAAGTGAAGACATG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAAGCTCAAGAACTGCCAATAAAGAAAAACCTAAGTGAAGACATG  792

seq1  GGGCAATGTGGCAATGGAATGATGAAATGTCATCTGTTCTATAGACACTG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAATGTGGCAATGGAATGATGAAATGTCATCTGTTCTATAGACACTG  842

seq1  GGCCCATGGGTAAATGCAGCAGAAGACAGAGTTAGAACATAGAAATGGGG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATGGGTAAATGCAGCAGAAGACAGAGTTAGAACATAGAAATGGGG  892

seq1  TTCAGTTCCTAAGGCCTTGGGACTCCTGGGGAAGAGGTGTGTGTGTGTGC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCCTAAGGCCTTGGGACTCCTGGGGAAGAGGTGTGTGTGTGTGC  942

seq1  CATCCTATACTGTATTAATCTGCTGCAGCTGGAACAGATTACTGTCGGTC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTATACTGTATTAATCTGCTGCAGCTGGAACAGATTACTGTCGGTC  992

seq1  TAGGGAGTTTAGACAACACAAACTCATCTCATTGCTCTGTAGGTCAGAAA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGTTTAGACAACACAAACTCATCTCATTGCTCTGTAGGTCAGAAA  1042

seq1  TCTAGGTTATCTTGGCTAGTCTCCGTTCTGTGTTGCACAGAGCCAAAGTC  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTTATCTTGGCTAGTCTCCGTTCTGTGTTGCACAGAGCCAAAGTC  1092

seq1  AAGATGCAGGCCAGCTGGGCTCTGATTGGGAGACTCAGGGAAGACGCTGC  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCAGGCCAGCTGGGCTCTGATTGGGAGACTCAGGGAAGACGCTGC  1142

seq1  CTTTAGGATGTTGAGAGAATTC  1156
      ||||||||||||||||||||||
seq2  CTTTAGGATGTTGAGAGAATTC  1164