BAC Information

Click to search

BAC

Clone NameB6Ng01-278H12
Chromosome10 (Build37)
Map Location 15,050,020 - 15,134,366
singlet/doubletdoublet
Overlap genenone
Upstream geneGpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
Downstream geneLOC637043, LOC100039492, LOC671439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278H12.bB6Ng01-278H12.g
ACCGA078704GA078705
length9181,064
definitionB6Ng01-278H12.b B6Ng01-278H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,050,020 - 15,050,946)(15,133,296 - 15,134,366)
sequence
gaattccatatatccattttggttctgattctttagagcagcagttctca
acctgtgagttatgaatccttttttggggcaagggggccaaagaaccttt
gcacaggggtcacatatcatatatcctgcacagcagatatttacagtaca
actcactacagtagcaaaattatagttatgaaatagaaacaaaaacaatt
ttgtggaagaaggacatcacaacatgaggaagggttgcaacaactaggaa
gggaaacactattggtttaaagaaaactaataagatgtgctttatatagt
aataatttataggttaatagaagaacaaatactttgtcatactctactta
ttaaacaattaccactgatttacattccttggtattccttgcttatgatt
ggcattcttattccttctaatctagttccttctaatctagtcttcatgaa
ggtggtctagacacattaccttttaaaaattatttatttatttatttttc
tattttttatttaaattaatttaatttttacactccatattttatacacc
cgcccacggtccacactccaactgttccacatcccatacctcctccccac
cacctgtctccatgtggaggtgcccaacccaccactccacctgacctcta
aattccctagggcctccagtctcttgagggttaggtgcattatctctgaa
tgaacacagacccaacagtcctttagtgcatgtgtgttggtgacctcata
tcatgctgtctgtttggtggtccagttttgagaggtatcgggagtccaga
ttaattgagacttctggtcctcctacagatctccttctcagcttctttca
gccttcccaaaatcacacagggtcagctactctgtcatgtagatgcaaac
atctgcatctgaactctc

gaattctttagaagtcatattttctttctttgacttagtaaatatccata
atgtcatattaacaatactggagaaagttatagaattggaacttgtgttc
tatgaaagaattggaatgttcaacattcatctaaataatgctttaaaaaa
aaccttaagtggaaatgtacaggagctatttcaaatgagtatgtctaatg
tgcagaaatgaacatttcttttccctttttgatacaaaacagatttttaa
aaatacaatatatgagcagggcgtggtggcacacacctttaatcccagca
cttgagaggcagaggcaggtggatttctgagttcgaggccagcctggtct
acagagtgagttccaggacagccagagctacacagaaaaaccctgtctga
aaaaacaaacaaacaaacaaacaaaaaaacaaacaaacaaaaaaacaaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
atacaatatatgtaattatggtttttctgtcctcaactcccccaaatcat
cattacttctctatcaaatagatcttgagcaagtacttgagactagataa
ctttgtgaagtagaaaaatcaaatatgctgctctgctaaaataaataaat
aaatgaatgaatgaataaataaataaataaataaataaataaataaataa
ataaataaatgtagtaataaaatggctcctaatgactctgctaaactcac
aggtcagggtcatgttcaatcctcatcagagaaattacctcctggtgtca
gtgagaataaatgaagagaccaactgctggaaaatgttcaaagaatgaca
aaccttggaacaattgatcctatatgggaatctatatataacccatgccc
tcaggagaccctactgaaaagaaagaacgtagattacaaagtgaagggca
tggagaaatcaaaggaaaggtccctataagtacattaggaccaatgtgca
tatgattcacaggactgggcagcatgtataagctacagagatctggctgt
ggatctcagactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_15050020_15050946
seq2: B6Ng01-278H12.b_44_961

seq1  GAATTCCATATATCCATTTTGGTTCTGATTCTTTAGAGCAGCAGTTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATATCCATTTTGGTTCTGATTCTTTAGAGCAGCAGTTCTCA  50

seq1  ACCTGTGAGTTATGAATCCTTTTTTGGGGCAAGGGGGCCAAAGAACCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGAGTTATGAATCCTTTTTTGGGGCAAGGGGGCCAAAGAACCTTT  100

seq1  GCACAGGGGTCACATATCATATATCCTGCACAGCAGATATTTACAGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGGTCACATATCATATATCCTGCACAGCAGATATTTACAGTACA  150

seq1  ACTCACTACAGTAGCAAAATTATAGTTATGAAATAGAAACAAAAACAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTACAGTAGCAAAATTATAGTTATGAAATAGAAACAAAAACAATT  200

seq1  TTGTGGAAGAAGGACATCACAACATGAGGAAGGGTTGCAACAACTAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAAGAAGGACATCACAACATGAGGAAGGGTTGCAACAACTAGGAA  250

seq1  GGGAAACACTATTGGTTTAAAGAAAACTAATAAGATGTGCTTTATATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACACTATTGGTTTAAAGAAAACTAATAAGATGTGCTTTATATAGT  300

seq1  AATAATTTATAGGTTAATAGAAGAACAAATACTTTGTCATACTCTACTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTATAGGTTAATAGAAGAACAAATACTTTGTCATACTCTACTTA  350

seq1  TTAAACAATTACCACTGATTTACATTCCTTGGTATTCCTTGCTTATGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAATTACCACTGATTTACATTCCTTGGTATTCCTTGCTTATGATT  400

seq1  GGCATTCTTATTCCTTCTAATCTAGTTCCTTCTAATCTAGTCTTCATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCTTATTCCTTCTAATCTAGTTCCTTCTAATCTAGTCTTCATGAA  450

seq1  GGTGGTCTAGACACATTACCTTTTAAAAATTATTTATTTATTTATTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCTAGACACATTACCTTTTAAAAATTATTTATTTATTTATTTTTC  500

seq1  TATTTTTTATTTAAATTAATTTAATTTTTACACTCCATATTTTATACACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTATTTAAATTAATTTAATTTTTACACTCCATATTTTATACACC  550

seq1  CGCCCACGGTCCACACTCCAACTGTTCCACATCCCATACCTCCTCCCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCACGGTCCACACTCCAACTGTTCCACATCCCATACCTCCTCCCCAC  600

seq1  CACCTGTCTCCATGTGGAGGTGCCCAACCCACCACTCCACCTGACCTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTCTCCATGTGGAGGTGCCCAACCCACCACTCCACCTGACCTCTA  650

seq1  AATTCCCTAGGGCCTCCAGTCTCTTGAGGGTTAGGTGCATTATCTCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCTAGGGCCTCCAGTCTCTTGAGGGTTAGGTGCATTATCTCTGAA  700

seq1  TGAACACAGACCCAACAGTCCTTTAGTGCATGTGTGTTGGTGACCTCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAGACCCAACAGTCCTTTAGTGCATGTGTGTTGGTGACCTCATA  750

seq1  TCATGCTGTCTGTTTGGTGGTCCAGTTTTGAGAGGTATCGGGAGTCCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTGTCTGTTTGGTGGTCCAGTTTTGAGAGGTATCGGGAGTCCAGA  800

seq1  TTAATTGAGACTTCTGGTCCTCCTACAGGATCTCCCTTCTCAGCTTCTTT  850
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  TTAATTGAGACTTCTGGTCCTCCTACA-GATCT-CCTTCTCAGCTTCTTT  848

seq1  CAGCCTTCCCAAAATCAACAACAGGGGTCAGCTACCTCTGTCCATTGGTT  900
      |||||||||||||||||   ||| |||||||||| |||||| |||    |
seq2  CAGCCTTCCCAAAATCA--CACA-GGGTCAGCTA-CTCTGT-CAT---GT  890

seq1  AGATGCAAACATCTGCATCTG-ACTCTC  927
      ||||||||||||||||||||| ||||||
seq2  AGATGCAAACATCTGCATCTGAACTCTC  918


seq1: chr10_15133296_15134366
seq2: B6Ng01-278H12.g_68_1127 (reverse)

seq1  TCAGTTCTGAGATCCCACCAGGCCCAGATCTCTGTAGGCTTTATACATGC  50
      |||| ||||||||||   |||  ||||||||||||||   ||||||||||
seq2  TCAG-TCTGAGATCC--ACAG--CCAGATCTCTGTAG--CTTATACATGC  43

seq1  TGCCCCAGTCCCTGTGAATTCATATGCACATTGGTCCTAATGTACTTATA  100
      || |||||| |||||||| |||||||||||||||||||||||||||||||
seq2  TG-CCCAGT-CCTGTGAA-TCATATGCACATTGGTCCTAATGTACTTATA  90

seq1  GGAACCTTTTCCTTTGATTTCTCCATGCCCTTCACTTTGTAATCTACCTT  150
      || ||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  GGGACC-TTTCCTTTGATTTCTCCATGCCCTTCACTTTGTAATCTACGTT  139

seq1  CTTTCTTTTCAGTAGGGTCTCCTGAGGGCATGGGTTATATATAGATTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTCAGTAGGGTCTCCTGAGGGCATGGGTTATATATAGATTCCC  189

seq1  ATATAGGATCAATTGTTCCAAGGTTTGTCATTCTTTGAACATTTTCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGATCAATTGTTCCAAGGTTTGTCATTCTTTGAACATTTTCCAGC  239

seq1  AGTTGGTCTCTTCATTTATTCTCACTGACACCAGGAGGTAATTTCTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTCTCTTCATTTATTCTCACTGACACCAGGAGGTAATTTCTCTGA  289

seq1  TGAGGATTGAACATGACCCTGACCTGTGAGTTTAGCAGAGTCATTAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATTGAACATGACCCTGACCTGTGAGTTTAGCAGAGTCATTAGGAG  339

seq1  CCATTTTATTACTACATTTATTTATTTATTTATTTATTTATTTATTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTATTACTACATTTATTTATTTATTTATTTATTTATTTATTTATT  389

seq1  TATTTATTTATTCATTCATTCATTTATTTATTTATTTTAGCAGAGCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTCATTCATTCATTTATTTATTTATTTTAGCAGAGCAGCA  439

seq1  TATTTGATTTTTCTACTTCACAAAGTTATCTAGTCTCAAGTACTTGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATTTTTCTACTTCACAAAGTTATCTAGTCTCAAGTACTTGCTCA  489

seq1  AGATCTATTTGATAGAGAAGTAATGATGATTTGGGGGAGTTGAGGACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTATTTGATAGAGAAGTAATGATGATTTGGGGGAGTTGAGGACAGA  539

seq1  AAAACCATAATTACATATATTGTATTCTTTCTTTCTTTCTTTCTTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATAATTACATATATTGTATTCTTTCTTTCTTTCTTTCTTTCTTT  589

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTTGTTTTTTTGTTTGTTTGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTTGTTTTTTTGTTTGTTTGTTTT  639

seq1  TTTGTTTGTTTGTTTGTTTGTTTTTTCAGACAGGGTTTTTCTGTGTAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGTTTGTTTTTTCAGACAGGGTTTTTCTGTGTAGCT  689

seq1  CTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGA  739

seq1  AATCCACCTGCCTCTGCCTCTCAAGTGCTGGGATTAAAGGTGTGTGCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACCTGCCTCTGCCTCTCAAGTGCTGGGATTAAAGGTGTGTGCCAC  789

seq1  CACGCCCTGCTCATATATTGTATTTTTAAAAATCTGTTTTGTATCAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCCTGCTCATATATTGTATTTTTAAAAATCTGTTTTGTATCAAAAA  839

seq1  GGGAAAAGAAATGTTCATTTCTGCACATTAGACATACTCATTTGAAATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAGAAATGTTCATTTCTGCACATTAGACATACTCATTTGAAATAG  889

seq1  CTCCTGTACATTTCCACTTAAGGTTTTTTTTAAAGCATTATTTAGATGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTACATTTCCACTTAAGGTTTTTTTTAAAGCATTATTTAGATGAA  939

seq1  TGTTGAACATTCCAATTCTTTCATAGAACACAAGTTCCAATTCTATAACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAACATTCCAATTCTTTCATAGAACACAAGTTCCAATTCTATAACT  989

seq1  TTCTCCAGTATTGTTAATATGACATTATGGATATTTACTAAGTCAAAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGTATTGTTAATATGACATTATGGATATTTACTAAGTCAAAGAA  1039

seq1  AGAAAATATGACTTCTAAAGA  1071
      |||||||||||||||||||||
seq2  AGAAAATATGACTTCTAAAGA  1060


| Home | SequenceCutter | Blast | Download |